Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C2CD4C	126567	broad.mit.edu	36	19	359319	359320	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136263	exon2	c.43_44insG	p.S15fs	.	.	.
AKR1B15	441282	broad.mit.edu	36	7	133911179	133911179	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080538	exon8	c.G703A	p.V235I	.	.	.
C7orf29	113763	broad.mit.edu	36	7	149659042	149659042	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138434	exon1	c.G616A	p.V206I	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34960902	34960902	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015283	exon13	c.G1034A	p.C345Y	.	.	.
C7orf10	79783	broad.mit.edu	36	7	40194693	40194693	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193312	exon4	c.C322T	p.R108X	.	.	.
PMS2	5395	broad.mit.edu	36	7	5983744	5983745	+	Splice_Site	DNP	CC	TG	TG	novel		TCGA-AG-3881-01	TCGA-AG-3881-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000535	exon14	c.2445_2445CA	.	.	.	.
SRCRB4D	136853	broad.mit.edu	36	7	75857487	75857487	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080744	exon11	c.A1553T	p.Q518L	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92602965	92602965	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152703	exon5	c.G256T	p.D86Y	.	.	.
CENPB	1059	broad.mit.edu	36	20	3714001	3714001	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001810	exon1	c.C1130T	p.P377L	.	.	.
CCDC117	150275	broad.mit.edu	36	22	27512240	27512240	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173510	exon5	c.C766T	p.P256S	.	.	.
EIF3D	8664	broad.mit.edu	36	22	35238520	35238520	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003753	exon13	c.A1282G	p.N428D	.	.	.
CACNA1I	8911	broad.mit.edu	36	22	38345316	38345316	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021096	exon4	c.G538A	p.V180M	.	.	.
CCDC159	126075	broad.mit.edu	36	19	11321668	11321668	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080503	exon3	c.A110T	p.E37V	.	.	.
CCDC159	126075	broad.mit.edu	36	19	11322550	11322550	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080503	exon5	c.G293A	p.R98Q	.	.	.
CNN1	1264	broad.mit.edu	36	19	11521241	11521241	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001299	exon6	c.C605T	p.A202V	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15151210	15151210	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000435	exon21	c.C3425A	p.A1142D	.	.	.
OR10H2	26538	broad.mit.edu	36	19	15700060	15700060	+	Silent	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013939	exon1	c.C207T	p.S69S	.	.	.
OR10H1	26539	broad.mit.edu	36	19	15779641	15779641	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013940	exon1	c.C207T	p.S69S	.	.	.
PLEKHA4	57664	broad.mit.edu	36	19	54060670	54060670	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020904	exon3	c.C94T	p.R32W	.	.	.
ZNF160	90338	broad.mit.edu	36	19	58263916	58263916	+	Silent	SNP	T	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198893	exon7	c.A1683T	p.G561G	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61781534	61781534	+	Missense_Mutation	SNP	T	A	A	rs35077804	by-1000genomes	TCGA-AG-3881-01	TCGA-AG-3881-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001668	exon6	c.T1925A	p.I642N	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116701458	116701458	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014112	exon3	c.G42T	p.M14I	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118252506	118252506	+	Silent	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173851	exon7	c.C882T	p.V294V	.	.	.
MTBP	27085	broad.mit.edu	36	8	121532694	121532694	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022045	exon4	c.T376G	p.C126G	.	.	.
FAM83A	84985	broad.mit.edu	36	8	124264507	124264507	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032899	exon1	c.A230G	p.E77G	.	.	.
TRAPPC9	83696	broad.mit.edu	36	8	141355082	141355082	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001160372	exon15	c.C2135A	p.P712H	.	.	.
FLG	2312	broad.mit.edu	36	1	150551173	150551173	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002016	exon3	c.C2813G	p.T938R	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156862565	156862565	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003126	exon42	c.A5905G	p.K1969E	.	.	.
NBPF1	55672	broad.mit.edu	36	1	16764864	16764864	+	Missense_Mutation	SNP	G	A	A	rs67028480	unknown	TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017940	exon27	c.C2920T	p.Q974X	.	.	.
KLHL20	27252	broad.mit.edu	36	1	171987608	171987608	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014458	exon4	c.G680A	p.S227N	.	.	.
DYRK3	8444	broad.mit.edu	36	1	204888320	204888320	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003582	exon3	c.G1154A	p.R385H	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226549199	226549199	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052843	exon43	c.G11491A	p.V3831M	.	.	.
FMN2	56776	broad.mit.edu	36	1	238559284	238559284	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020066	exon10	c.A4330G	p.I1444V	.	.	.
RHD	6007	broad.mit.edu	36	1	25500114	25500114	+	Missense_Mutation	SNP	G	A	A	rs17418091	by-frequency	TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127691	exon4	c.G577A	p.E193K	.	.	.
NCDN	23154	broad.mit.edu	36	1	35803491	35803491	+	Silent	SNP	G	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014841	exon7	c.G1779C	p.R593R	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74279955	74279955	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001105659	exon7	c.A1248T	p.K416N	.	.	.
FNBP1L	54874	broad.mit.edu	36	1	93773035	93773035	+	Silent	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024948	exon9	c.C972T	p.L324L	.	.	.
ATP5L	10632	broad.mit.edu	36	11	117784964	117784964	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006476	exon3	c.A253T	p.M85L	.	.	.
GRAMD1B	57476	broad.mit.edu	36	11	122953445	122953445	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_020716	exon2	c.C184T	p.Q62X	.	.	.
OR10G4	390264	broad.mit.edu	36	11	123392327	123392327	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001004462	exon1	c.C836T	p.T279M	.	.	.
NCAPD3	23310	broad.mit.edu	36	11	133560008	133560008	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015261	exon18	c.G2335C	p.D779H	.	.	.
TRIM5	85363	broad.mit.edu	36	11	5657648	5657648	+	Silent	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033092	exon2	c.C336A	p.V112V	.	.	.
CHKA	1119	broad.mit.edu	36	11	67588598	67588598	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212469	exon9	c.T1148G	p.I383R	.	.	.
GRM5	2915	broad.mit.edu	36	11	87940752	87940752	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000842	exon8	c.G1747C	p.A583P	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165728713	165728713	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006661	exon16	c.C1422A	p.N474K	.	.	.
DAAM2	23500	broad.mit.edu	36	6	39954289	39954289	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015345	exon13	c.C1492T	p.R498C	.	.	.
CRISP1	167	broad.mit.edu	36	6	49927736	49927736	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131	exon3	c.C132T	p.I44I	.	.	.
FAM83B	222584	broad.mit.edu	36	6	54843154	54843154	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010872	exon2	c.C151T	p.R51X	.	.	.
MYH3	4621	broad.mit.edu	36	17	10482378	10482378	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002470	exon26	c.G3436T	p.E1146X	.	.	.
VTN	7448	broad.mit.edu	36	17	23720087	23720087	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000638	exon5	c.C759T	p.N253N	.	.	.
C17orf47	284083	broad.mit.edu	36	17	53975510	53975510	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001038704	exon1	c.C1037T	p.P346L	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59403472	59403472	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000334	exon2	c.C364T	p.R122C	.	.	.
RNF213	57674	broad.mit.edu	36	17	75934340	75934340	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020914	exon30	c.G7757A	p.R2586H	.	.	.
OVCA2	124641	broad.mit.edu	36	17	1892790	1892790	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-3881-01	TCGA-AG-3881-01			T	-	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_080822	exon2	c.326delT	p.L109fs	.	.	.
ZNF629	23361	broad.mit.edu	36	16	30701458	30701458	+	Silent	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080417	exon3	c.G1692A	p.P564P	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69565638	69565638	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032821	exon33	c.G4973C	p.R1658T	.	.	.
MEP1B	4225	broad.mit.edu	36	18	28036963	28036963	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005925	exon6	c.G360A	p.K120K	.	.	.
FSTL1	11167	broad.mit.edu	36	3	121611163	121611163	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007085	exon6	c.G368A	p.R123H	.	.	.
ACAD9	28976	broad.mit.edu	36	3	130099187	130099187	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014049	exon6	c.C577T	p.R193W	.	.	.
RAB6B	51560	broad.mit.edu	36	3	135066175	135066175	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016577	exon2	c.C72T	p.V24V	.	.	.
CTNNB1	1499	broad.mit.edu	36	3	41250658	41250658	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098210	exon10	c.C1549T	p.L517F	.	.	.
ALS2CL	259173	broad.mit.edu	36	3	46688456	46688456	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001190707	exon24	c.C2606T	p.S869L	.	.	.
DAZL	1618	broad.mit.edu	36	3	16613504	16613504	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-3881-01	TCGA-AG-3881-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001351	exon5	c.353delA	p.N118fs	.	.	.
C12orf42	374470	broad.mit.edu	36	12	102220068	102220068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001099336	exon6	c.C1031T	p.T344M	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119075547	119075547	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006836	exon33	c.C3915T	p.N1305N	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122838436	122838436	+	Silent	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207437	exon10	c.G1371T	p.R457R	.	.	.
EPS8	2059	broad.mit.edu	36	12	15710054	15710054	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004447	exon8	c.C639T	p.P213P	.	.	.
METTL7A	25840	broad.mit.edu	36	12	49610106	49610106	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014033	exon2	c.G641A	p.R214Q	.	.	.
RDH16	8608	broad.mit.edu	36	12	55632248	55632248	+	Silent	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003708	exon4	c.G786A	p.S262S	.	.	.
CDCA3	83461	broad.mit.edu	36	12	6829107	6829107	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031299	exon4	c.G427C	p.E143Q	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83779701	83779701	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182767	exon12	c.C2034T	p.H678H	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23475704	23475704	+	Silent	SNP	C	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024490	exon21	c.G4377T	p.T1459T	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77537029	77537029	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015206	exon2	c.G1485T	p.Q495H	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147779986	147779986	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004575	exon1	c.G244T	p.G82W	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0	.	.
C4orf41	60684	broad.mit.edu	36	4	184824546	184824546	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_199053	exon3	c.A347C	p.E116A	.	.	.
SORBS2	8470	broad.mit.edu	36	4	186782164	186782164	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021069	exon13	c.C1401T	p.S467S	.	.	.
FRYL	285527	broad.mit.edu	36	4	48244501	48244501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015030	exon41	c.G4931A	p.R1644H	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62618959	62618959	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015236	exon23	c.C4148T	p.P1383L	.	.	.
UGT2A3	79799	broad.mit.edu	36	4	69851437	69851437	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024743	exon1	c.A631G	p.N211D	.	.	.
HCCS	3052	broad.mit.edu	36	X	11049795	11049795	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005333	exon7	c.T751A	p.S251T	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123342600	123342600	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014253	exon31	c.C7645T	p.R2549W	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144712305	144712305	+	Silent	SNP	T	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144006	exon3	c.T670C	p.L224L	.	.	.
SLC7A3	84889	broad.mit.edu	36	X	70063456	70063456	+	Silent	SNP	A	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032803	exon9	c.T1447C	p.L483L	.	.	.
GPR174	84636	broad.mit.edu	36	X	78314079	78314079	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032553	exon1	c.G919T	p.D307Y	.	.	.
POLR1B	84172	broad.mit.edu	36	2	113049691	113049691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137604	exon14	c.G3154A	p.D1052N	.	.	.
POTEE	445582	broad.mit.edu	36	2	131738236	131738236	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083538	exon15	c.A2738C	p.K913T	.	.	.
SATB2	23314	broad.mit.edu	36	2	199881758	199881758	+	Silent	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172509	exon10	c.C1710T	p.H570H	.	.	.
SNED1	25992	broad.mit.edu	36	2	241637206	241637206	+	Silent	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080437	exon11	c.C1599T	p.T533T	.	.	.
COL27A1	85301	broad.mit.edu	36	9	116102206	116102206	+	Silent	SNP	A	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032888	exon50	c.A4620T	p.A1540A	.	.	.
STXBP1	6812	broad.mit.edu	36	9	129484621	129484621	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003165	exon18	c.G1663C	p.E555Q	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136851857	136851857	+	Silent	SNP	C	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000093	exon58	c.C4521A	p.G1507G	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8461084	8461084	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040712	exon14	c.G2173T	p.G725C	.	.	.
RB1	5925	broad.mit.edu	36	13	47931947	47931947	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000321	exon20	c.A2083G	p.M695V	.	.	.
PDCD11	22984	broad.mit.edu	36	10	105162884	105162884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014976	exon9	c.G1000A	p.V334I	.	.	.
CUBN	8029	broad.mit.edu	36	10	17182216	17182216	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001081	exon14	c.G1559A	p.R520Q	.	.	.
YME1L1	10730	broad.mit.edu	36	10	27483124	27483124	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014263	exon1	c.G22A	p.V8M	.	.	.
APC	324	broad.mit.edu	36	5	112203289	112203289	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C4045T	p.Q1349X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
NUP155	9631	broad.mit.edu	36	5	37340609	37340609	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153485	exon27	c.A3151C	p.K1051Q	.	.	.
C7	730	broad.mit.edu	36	5	41017419	41017419	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000587	exon18	c.C2519T	p.A840V	.	.	.
PAPD7	11044	broad.mit.edu	36	5	6792912	6792912	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171805	exon4	c.C205T	p.R69W	.	.	.
GPR98	84059	broad.mit.edu	36	5	90108107	90108107	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3881-01	TCGA-AG-3881-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032119	exon61	c.T12485C	p.I4162T	.	.	.