Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target XRCC3 7517 broad.mit.edu 36 14 103234953 103234954 + Frame_Shift_Ins INS - G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001100118 exon9 c.976_977insC p.S326fs . . . SPTB 6710 broad.mit.edu 36 14 64290027 64290028 + Frame_Shift_Ins INS - G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001024858 exon32 c.6583_6584insC p.N2195fs . . . AKT1S1 84335 broad.mit.edu 36 19 55066747 55066748 + Frame_Shift_Ins INS - G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001098632 exon4 c.496_497insC p.T166fs . . . MEN1 4221 broad.mit.edu 36 11 64328668 64328669 + Frame_Shift_Ins INS - G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_130800 exon10 c.1562_1563insC p.R521fs . . . APC 324 broad.mit.edu 36 5 112192562 112192563 + Frame_Shift_Ins INS - A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_000038 exon14 c.1737_1738insA p.V579fs . . . WNT2 7472 broad.mit.edu 36 7 116705531 116705531 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_003391 exon5 c.G997A p.A333T . . . CCZ1 51622 broad.mit.edu 36 7 5906720 5906720 + Silent SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_015622 exon3 c.C309T p.V103V . . . PTPRT 11122 broad.mit.edu 36 20 40160526 40160526 + Silent SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_133170 exon28 c.C3852T p.F1284F . . . SYT16 83851 broad.mit.edu 36 14 61606236 61606236 + Missense_Mutation SNP G T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G T G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_031914 exon2 c.G686T p.R229L . . . MTHFD1 4522 broad.mit.edu 36 14 63990296 63990296 + Silent SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_005956 exon25 c.C2529T p.P843P . . . DNMT1 1786 broad.mit.edu 36 19 10109656 10109656 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001130823 exon36 c.C4145T p.T1382M . . . ZNF382 84911 broad.mit.edu 36 19 41792746 41792746 + Silent SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032825 exon3 c.G90A p.A30A . . . LIPE 3991 broad.mit.edu 36 19 47606355 47606355 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_005357 exon2 c.C1363T p.R455W . . . ZNF235 9310 broad.mit.edu 36 19 49484022 49484022 + Missense_Mutation SNP C G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_004234 exon5 c.G1406C p.S469T . . . EXOC3L2 90332 broad.mit.edu 36 19 50422773 50422773 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_138568 exon5 c.G391A p.G131S . . . PRKCG 5582 broad.mit.edu 36 19 59086834 59086834 + Silent SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_002739 exon6 c.G624A p.T208T PRKCG,large_intestine,NS,Substitution - coding silent,0 . . IGSF3 3321 broad.mit.edu 36 1 116960547 116960547 + Silent SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001542 exon3 c.G99A p.T33T . . . AADACL4 343066 broad.mit.edu 36 1 12648748 12648748 + Silent SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001013630 exon4 c.C639T p.P213P . . . CD5L 922 broad.mit.edu 36 1 156071010 156071010 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_005894 exon4 c.C529T p.R177W . . . CD1B 910 broad.mit.edu 36 1 156567331 156567331 + Missense_Mutation SNP C A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001764 exon2 c.G207T p.K69N . . . SPTA1 6708 broad.mit.edu 36 1 156886325 156886325 + Missense_Mutation SNP C A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C A C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_003126 exon25 c.G3514T p.A1172S . . . DUSP27 92235 broad.mit.edu 36 1 165362992 165362992 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001080426 exon5 c.C2000T p.P667L . . . FAM5C 339479 broad.mit.edu 36 1 188334807 188334807 + Missense_Mutation SNP T A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 T T T A T T Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_199051 exon8 c.A1265T p.E422V . . . HIST3H2BB 128312 broad.mit.edu 36 1 226712495 226712495 + Silent SNP T C C novel TCGA-AG-3882-01 TCGA-AG-3882-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_175055 exon1 c.T42C p.G14G . . . FMN2 56776 broad.mit.edu 36 1 238438459 238438459 + Missense_Mutation SNP G T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_020066 exon5 c.G3724T p.G1242C . . . MUC2 4583 broad.mit.edu 36 11 1082884 1082884 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_002457 exon30 c.C4703T p.T1568M . . . SLC1A2 6506 broad.mit.edu 36 11 35290365 35290365 + Nonsense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_004171 exon4 c.C517T p.R173X . . . NXF1 10482 broad.mit.edu 36 11 62327913 62327913 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_006362 exon2 c.C142T p.R48W . . . PRDM1 639 broad.mit.edu 36 6 106660232 106660232 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001198 exon5 c.G1504A p.A502T . . . C6orf97 80129 broad.mit.edu 36 6 151956010 151956010 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_025059 exon8 c.C1369T p.R457W . . . MRC2 9902 broad.mit.edu 36 17 58095932 58095932 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_006039 exon2 c.G410A p.R137H . . . TP53 7157 broad.mit.edu 36 17 7517831 7517831 + Missense_Mutation SNP G C C rs17849781 unknown TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001126114 exon8 c.C832G p.P278A TP53,central_nervous_system,brain,Substitution - Missense,0 . . COL18A1 80781 broad.mit.edu 36 21 45726327 45726327 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_030582 exon13 c.G2174A p.R725K . . . ITGAL 3683 broad.mit.edu 36 16 30429254 30429254 + Silent SNP T A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001114380 exon20 c.T2328A p.S776S . . . CLEC18C 283971 broad.mit.edu 36 16 68768871 68768871 + Missense_Mutation SNP C G G rs3869428 unknown TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_173619 exon3 c.C443G p.T148S . . . EMILIN2 84034 broad.mit.edu 36 18 2875079 2875079 + Silent SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032048 exon3 c.C375T p.P125P . . . PHLDB2 90102 broad.mit.edu 36 3 113163702 113163702 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001134439 exon13 c.G2930A p.R977H . . . VGLL4 9686 broad.mit.edu 36 3 11659941 11659941 + Missense_Mutation SNP T G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 T T Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001128219 exon1 c.A52C p.N18H . . . GSK3B 2932 broad.mit.edu 36 3 121065091 121065091 + Missense_Mutation SNP G T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_002093 exon10 c.C1000A p.L334M . . . MASP1 5648 broad.mit.edu 36 3 188461283 188461283 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001031849 exon4 c.G487A p.G163S . . . RNFT2 84900 broad.mit.edu 36 12 115771548 115771548 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_001109903 exon11 c.G1247A p.R416H . . . PIWIL1 9271 broad.mit.edu 36 12 129406056 129406056 + Missense_Mutation SNP A G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 A A Unknown Unknown Somatic Phase_I Unspecified Illumina NM_004764 exon12 c.A1295G p.D432G . . . LRRK2 120892 broad.mit.edu 36 12 39002537 39002537 + Missense_Mutation SNP C A A rs72547980 unknown TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_198578 exon37 c.C5467A p.Q1823K . . . NELL2 4753 broad.mit.edu 36 12 43200197 43200197 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001145108 exon19 c.C2258T p.P753L . . . LACTB 114294 broad.mit.edu 36 15 61220578 61220578 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032857 exon6 c.G1165A p.V389M . . . TACR3 6870 broad.mit.edu 36 4 104730397 104730397 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001059 exon5 c.C1289T p.T430M . . . TTC29 83894 broad.mit.edu 36 4 147944071 147944071 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_031956 exon11 c.G1318A p.D440N . . . GK2 2712 broad.mit.edu 36 4 80547591 80547591 + Missense_Mutation SNP G T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_033214 exon1 c.C788A p.A263E . . . CPZ 8532 broad.mit.edu 36 4 8654030 8654030 + De_novo_Start_OutOfFrame SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_003652 exon2 c.C369T p.D123D . . . TLR8 51311 broad.mit.edu 36 X 12849070 12849070 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_138636 exon2 c.G1990A p.A664T . . . MCF2 4168 broad.mit.edu 36 X 138536519 138536519 + Missense_Mutation SNP G T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G T G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001099855 exon8 c.C681A p.D227E . . . PASD1 139135 broad.mit.edu 36 X 150591530 150591530 + Missense_Mutation SNP A G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 A A Unknown Unknown Somatic Phase_I Unspecified Illumina NM_173493 exon14 c.A1657G p.M553V . . . CNKSR2 22866 broad.mit.edu 36 X 21537201 21537201 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001168649 exon19 c.G2090A p.R697H . . . CXorf59 286464 broad.mit.edu 36 X 36026881 36026881 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_173695 exon6 c.C692T p.P231L . . . CNTNAP5 129684 broad.mit.edu 36 2 125237721 125237721 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_130773 exon15 c.C2234T p.T745I . . . SSB 6741 broad.mit.edu 36 2 170375980 170375980 + Missense_Mutation SNP C A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C A C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_003142 exon11 c.C1039A p.Q347K . . . TTN 7273 broad.mit.edu 36 2 179178524 179178524 + Nonsense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_003319 exon107 c.C26548T p.R8850X . . . TTN 7273 broad.mit.edu 36 2 179287523 179287523 + Missense_Mutation SNP C A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C A C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_133378 exon88 c.G22491T p.K7497N . . . DYSF 8291 broad.mit.edu 36 2 71736876 71736876 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001130982 exon43 c.G4682A p.R1561Q . . . COL5A1 1289 broad.mit.edu 36 9 136856322 136856322 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_000093 exon62 c.G4754A p.R1585Q . . . HIATL1 84641 broad.mit.edu 36 9 96261393 96261393 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G Unknown Unknown Somatic Phase_I Unspecified Illumina NM_032558 exon12 c.G1399A p.G467S . . . ZMYM2 7750 broad.mit.edu 36 13 19558013 19558013 + Silent SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_197968 exon25 c.C3993T p.C1331C . . . FREM2 341640 broad.mit.edu 36 13 38169918 38169918 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_207361 exon2 c.G5257A p.D1753N . . . KLF12 11278 broad.mit.edu 36 13 73318001 73318001 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C Unknown Unknown Somatic Phase_I Unspecified Illumina NM_007249 exon4 c.G634A p.V212M . . . FBXW4 6468 broad.mit.edu 36 10 103417644 103417645 + Missense_Mutation DNP GC AT AT novel TCGA-AG-3882-01 TCGA-AG-3882-01 Unknown Unknown Somatic Phase_I Unspecified Illumina NM_022039 exon5 c.758_759AT . . . . SORCS3 22986 broad.mit.edu 36 10 106997066 106997066 + Missense_Mutation SNP G A A novel TCGA-AG-3882-01 TCGA-AG-3882-01 G G G A G G Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_014978 exon22 c.G3092A p.R1031Q . . . TCF7L2 6934 broad.mit.edu 36 10 114915323 114915323 + Missense_Mutation SNP C T T novel TCGA-AG-3882-01 TCGA-AG-3882-01 C C C T C C Unknown Valid Somatic Phase_I Unspecified 454 Illumina NM_001146285 exon13 c.C1342T p.R448C TCF7L2,large_intestine,colon,Substitution - Missense,0 . . MRPS36 92259 broad.mit.edu 36 5 68549422 68549422 + Missense_Mutation SNP A G G novel TCGA-AG-3882-01 TCGA-AG-3882-01 A A Unknown Unknown Somatic Phase_I Unspecified Illumina NM_033281 exon1 c.A10G p.S4G . . .