Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MARCKSL1	65108	broad.mit.edu	36	1	32573126	32573127	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023009	exon2	c.247_248insC	p.K83fs	.	.	.
FBXO24	26261	broad.mit.edu	36	7	100030052	100030052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163499	exon6	c.C868T	p.R290C	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100297099	100297099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020246	exon11	c.C1493T	p.P498L	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11599521	11599521	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015204	exon3	c.C1156T	p.R386C	.	.	.
SPAM1	6677	broad.mit.edu	36	7	123381255	123381255	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174044	exon3	c.C395A	p.T132K	.	.	.
PAX4	5078	broad.mit.edu	36	7	127041094	127041094	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006193	exon4	c.C490T	p.R164W	.	.	.
LRGUK	136332	broad.mit.edu	36	7	133534620	133534620	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144648	exon14	c.C1654T	p.R552C	.	.	.
SLC4A2	6522	broad.mit.edu	36	7	150398568	150398568	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_001199694	exon10	c.C1499A	p.A500D	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18733860	18733860	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178423	exon13	c.C1855T	p.P619S	.	.	.
PMS2	5395	broad.mit.edu	36	7	5989007	5989007	+	Silent	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000535	exon12	c.C2148T	p.T716T	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81434438	81434438	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000722	exon31	c.T2485G	p.C829G	.	.	.
BPIL3	128859	broad.mit.edu	36	20	31089077	31089077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_174897	exon8	c.G718A	p.G240R	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32793142	32793142	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014071	exon11	c.A4579G	p.K1527E	.	.	.
CEP250	11190	broad.mit.edu	36	20	33562713	33562713	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007186	exon35	c.C7173T	p.L2391L	.	.	.
C20orf103	24141	broad.mit.edu	36	20	9458366	9458366	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001199897	exon5	c.G610A	p.V204I	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104487411	104487411	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.G5422T	p.D1808Y	.	.	.
CPNE6	9362	broad.mit.edu	36	14	23615993	23615993	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006032	exon14	c.A1231G	p.N411D	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23956105	23956105	+	Silent	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025081	exon9	c.G5310A	p.E1770E	.	.	.
FBXO7	25793	broad.mit.edu	36	22	31205253	31205253	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033024	exon2	c.C171T	p.D57D	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22733364	22733364	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080409	exon5	c.C914T	p.P305L	.	.	.
RYR1	6261	broad.mit.edu	36	19	43754686	43754686	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001042723	exon94	c.G13919A	p.R4640Q	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44022633	44022633	+	Silent	SNP	A	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005335	exon8	c.T777G	p.S259S	.	.	.
RELB	5971	broad.mit.edu	36	19	50229382	50229382	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006509	exon9	c.C1244T	p.P415L	.	.	.
FPR2	2358	broad.mit.edu	36	19	56964237	56964237	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001462	exon2	c.G514T	p.G172W	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57561497	57561497	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173530	exon6	c.G1054A	p.V352I	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59446482	59446482	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001081442	exon13	c.G1756T	p.A586S	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60142520	60142520	+	Silent	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139176	exon4	c.C1479T	p.H493H	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338370	62338370	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052882	exon5	c.A1147C	p.K383Q	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106883693	106883693	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012082	exon8	c.G2207A	p.R736H	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23273627	23273627	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002318	exon3	c.C452T	p.T151M	.	.	.
EFCAB1	79645	broad.mit.edu	36	8	49804252	49804252	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024593	exon5	c.G478T	p.D160Y	.	.	.
RP1	6101	broad.mit.edu	36	8	55702447	55702447	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006269	exon4	c.A3452T	p.H1151L	.	.	.
CLVS1	157807	broad.mit.edu	36	8	62533431	62533431	+	Silent	SNP	T	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173519	exon5	c.T753C	p.H251H	.	.	.
OTUD7B	56957	broad.mit.edu	36	1	148202809	148202809	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020205	exon6	c.A694G	p.R232G	.	.	.
HRNR	388697	broad.mit.edu	36	1	150459600	150459600	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001009931	exon3	c.C1129T	p.H377Y	.	.	.
PTCH2	8643	broad.mit.edu	36	1	45067965	45067965	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166292	exon8	c.C991T	p.H331Y	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64902902	64902902	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020925	exon15	c.A2075G	p.Y692C	.	.	.
HTR3A	3359	broad.mit.edu	36	11	113362741	113362741	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213621	exon7	c.G1015T	p.A339S	.	.	.
TECTA	7007	broad.mit.edu	36	11	120494479	120494479	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005422	exon6	c.G1045T	p.A349S	.	.	.
MPEG1	219972	broad.mit.edu	36	11	58736734	58736734	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001039396	exon1	c.C181T	p.R61X	.	.	.
FERMT3	83706	broad.mit.edu	36	11	63745074	63745074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178443	exon13	c.G1568A	p.R523Q	.	.	.
DLG2	1740	broad.mit.edu	36	11	83923392	83923392	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001364	exon2	c.C73T	p.H25Y	.	.	.
FAT3	120114	broad.mit.edu	36	11	92173331	92173331	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001008781	exon9	c.G7504A	p.V2502I	.	.	.
WASF1	8936	broad.mit.edu	36	6	110536541	110536541	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024934	exon5	c.G305A	p.R102Q	.	.	.
TXLNB	167838	broad.mit.edu	36	6	139605805	139605805	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153235	exon10	c.G1606A	p.A536T	.	.	.
FAM65B	9750	broad.mit.edu	36	6	24973545	24973545	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015864	exon7	c.T527G	p.L176R	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25596787	25596787	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017640	exon13	c.C1060T	p.L354F	.	.	.
LSM2	57819	broad.mit.edu	36	6	31881898	31881898	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021177	exon2	c.C4G	p.L2V	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51632223	51632223	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138694	exon61	c.G10660C	p.E3554Q	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11588880	11588880	+	Silent	SNP	G	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001372	exon31	c.G6153C	p.L2051L	.	.	.
GGNBP2	79893	broad.mit.edu	36	17	32016439	32016439	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024835	exon11	c.A1423C	p.S475R	.	.	.
ACACA	31	broad.mit.edu	36	17	32610455	32610455	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198834	exon41	c.G4938A	p.L1646L	.	.	.
PLCD3	113026	broad.mit.edu	36	17	40551333	40551333	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133373	exon6	c.G966A	p.S322S	.	.	.
HELZ	9931	broad.mit.edu	36	17	62605395	62605395	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014877	exon13	c.G1272A	p.L424L	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64383429	64383429	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007168	exon34	c.G4291T	p.A1431S	.	.	.
TP53	7157	broad.mit.edu	36	17	7519242	7519242	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.C413T	p.A138V	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.
RNF213	57674	broad.mit.edu	36	17	75969243	75969243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020914	exon57	c.C13805T	p.T4602M	.	.	.
GAS7	8522	broad.mit.edu	36	17	9769637	9769637	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003644	exon7	c.G599A	p.R200Q	.	.	.
LSS	4047	broad.mit.edu	36	21	46451058	46451058	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145437	exon15	c.G1280A	p.R427H	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31190740	31190740	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000632	exon7	c.C630A	p.N210K	.	.	.
ESRP2	80004	broad.mit.edu	36	16	66823862	66823862	+	Silent	SNP	G	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024939	exon8	c.C867G	p.G289G	.	.	.
PHLPP1	23239	broad.mit.edu	36	18	58797068	58797068	+	Silent	SNP	C	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194449	exon17	c.C4578G	p.S1526S	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70476101	70476101	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001146190	exon1	c.A4138T	p.I1380L	.	.	.
PARD6G	84552	broad.mit.edu	36	18	76061784	76061784	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032510	exon2	c.T95C	p.F32S	.	.	.
PTPRM	5797	broad.mit.edu	36	18	7916618	7916618	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002845	exon5	c.G600C	p.Q200H	.	.	.
CCRL1	51554	broad.mit.edu	36	3	133802533	133802533	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178445	exon1	c.A602T	p.Q201L	.	.	.
IQCG	84223	broad.mit.edu	36	3	199155071	199155071	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032263	exon4	c.A257G	p.Y86C	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38715006	38715006	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006514	exon27	c.C4709T	p.T1570M	.	.	.
CADPS	8618	broad.mit.edu	36	3	62398821	62398821	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_183393	exon25	c.G3538T	p.D1180Y	.	.	.
SETD5	55209	broad.mit.edu	36	3	9491836	9491836	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080517	exon22	c.A3716G	p.Y1239C	.	.	.
TBX5	6910	broad.mit.edu	36	12	113288431	113288431	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000192	exon8	c.C904A	p.Q302K	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4891348	4891348	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000217	exon2	c.C543T	p.I181I	.	.	.
CALCOCO1	57658	broad.mit.edu	36	12	52396316	52396316	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020898	exon8	c.C1000T	p.R334W	.	.	.
LAG3	3902	broad.mit.edu	36	12	6754765	6754765	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002286	exon5	c.C847T	p.R283C	.	.	.
MBD6	114785	broad.mit.edu	36	12	56207908	56207909	+	Frame_Shift_Del	DEL	TT	-	-	novel		TCGA-AG-3893-01	TCGA-AG-3893-01			TT	-	TT	TT	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052897	exon9	c.2247_2248del	p.749_750del	.	.	.
SPINT1	6692	broad.mit.edu	36	15	38924334	38924334	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003710	exon2	c.G290T	p.C97F	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52377377	52377377	+	Silent	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon10	c.G4065A	p.K1355K	.	.	.
AQP9	366	broad.mit.edu	36	15	56254512	56254512	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020980	exon4	c.C480T	p.N160N	.	.	.
C4orf17	84103	broad.mit.edu	36	4	100662870	100662870	+	Silent	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032149	exon3	c.G318A	p.V106V	.	.	.
FAT4	79633	broad.mit.edu	36	4	126631746	126631746	+	Silent	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon17	c.G14319T	p.P4773P	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292062	134292062	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032961	exon1	c.C1317T	p.G439G	.	.	.
TLL1	7092	broad.mit.edu	36	4	167135079	167135079	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012464	exon4	c.C458T	p.T153M	.	.	.
NEK1	4750	broad.mit.edu	36	4	170665464	170665464	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199400	exon19	c.C1672A	p.R558S	.	.	.
SMR3A	26952	broad.mit.edu	36	4	71267158	71267158	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012390	exon3	c.G263T	p.R88I	.	.	.
AMBN	258	broad.mit.edu	36	4	71506840	71506840	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016519	exon13	c.C1148T	p.A383V	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95425173	95425173	+	Silent	SNP	T	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128429	exon23	c.T2955A	p.I985I	.	.	.
ZCCHC16	340595	broad.mit.edu	36	X	111584943	111584943	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004308	exon3	c.G331A	p.G111R	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138699220	138699220	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001010986	exon13	c.G1309T	p.V437L	.	.	.
PHEX	5251	broad.mit.edu	36	X	21975187	21975187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000444	exon3	c.G286A	p.E96K	.	.	.
GAGE10	643832	broad.mit.edu	36	X	49048287	49048287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098413	exon2	c.G5A	p.S2N	.	.	.
VCX3B	425054	broad.mit.edu	36	X	8394341	8394341	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001888	exon3	c.G658A	p.V220M	.	.	.
GLI2	2736	broad.mit.edu	36	2	121463770	121463770	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005270	exon13	c.C3810A	p.C1270X	.	.	.
ANKAR	150709	broad.mit.edu	36	2	190301027	190301027	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144708	exon13	c.C2836T	p.L946L	.	.	.
UGT1A4	54657	broad.mit.edu	36	2	234292537	234292537	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007120	exon1	c.C332A	p.S111Y	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237153865	237153865	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020311	exon2	c.C18T	p.F6F	.	.	.
OR6B2	389090	broad.mit.edu	36	2	240618134	240618134	+	Missense_Mutation	SNP	G	A	A	rs61730692	unknown	TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005853	exon1	c.C386T	p.P129L	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	43986360	43986360	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133259	exon31	c.G3339A	p.T1113T	.	.	.
TET3	200424	broad.mit.edu	36	2	74128137	74128137	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144993	exon1	c.C1180A	p.Q394K	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8789213	8789213	+	Silent	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020738	exon30	c.C4404T	p.N1468N	.	.	.
AKNA	80709	broad.mit.edu	36	9	116179026	116179026	+	Silent	SNP	T	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030767	exon3	c.A882G	p.E294E	.	.	.
GLE1	2733	broad.mit.edu	36	9	130311004	130311004	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003722	exon2	c.C128G	p.P43R	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13214414	13214414	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003829	exon3	c.G352T	p.A118S	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132906900	132906900	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006059	exon7	c.C1339T	p.R447C	.	.	.
ZDHHC21	340481	broad.mit.edu	36	9	14664311	14664311	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178566	exon4	c.G28T	p.D10Y	.	.	.
DOCK8	81704	broad.mit.edu	36	9	431900	431900	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001190458	exon40	c.A5081T	p.Y1694F	.	.	.
F7	2155	broad.mit.edu	36	13	112819902	112819902	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000131	exon8	c.G796A	p.A266T	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18937679	18937679	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001141968	exon7	c.C205T	p.R69X	.	.	.
SACS	26278	broad.mit.edu	36	13	22802434	22802434	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014363	exon10	c.A13581C	p.E4527D	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24949182	24949182	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020824	exon9	c.C1648G	p.H550D	.	.	.
GPR158	57512	broad.mit.edu	36	10	25927095	25927096	+	Missense_Mutation	DNP	AA	TT	TT	novel		TCGA-AG-3893-01	TCGA-AG-3893-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020752	exon11	c.2534_2535TT	.	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27742778	27742778	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034842	exon1	c.G408A	p.A136A	.	.	.
KIAA0913	23053	broad.mit.edu	36	10	75218927	75218927	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015037	exon3	c.C430T	p.R144W	.	.	.
APC	324	broad.mit.edu	36	5	112203257	112203257	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C4013G	p.S1338X	APC,large_intestine,NS,Substitution - Missense,-2	.	.
H2AFY	9555	broad.mit.edu	36	5	134698586	134698586	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004893	exon9	c.G1095C	p.M365I	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140243289	140243289	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031865	exon1	c.G1252A	p.V418I	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140455671	140455671	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018936	exon1	c.C1113T	p.S371S	.	.	.
LIFR	3977	broad.mit.edu	36	5	38529538	38529538	+	Silent	SNP	C	T	T	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127671	exon14	c.G1992A	p.S664S	.	.	.
SSX6	280657	broad.mit.edu	36	X	47863889	47863889	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3893-01	TCGA-AG-3893-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.