Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TP53	7157	broad.mit.edu	36	17	7517616	7517617	+	Frame_Shift_Ins	INS	-	TGGC	TGGC	novel		TCGA-AG-3898-01	TCGA-AG-3898-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126116	exon5	c.559_560insGCCA	p.K187fs	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Nonsense,0	.	.
RNF133	168433	broad.mit.edu	36	7	122125964	122125964	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_139175	exon1	c.T245A	p.I82N	.	.	.
ZC3HAV1	56829	broad.mit.edu	36	7	138424966	138424966	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024625	exon2	c.A388C	p.N130H	.	.	.
FAM115C	285966	broad.mit.edu	36	7	143048025	143048025	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001130026	exon2	c.C448G	p.L150V	.	.	.
WDR60	55112	broad.mit.edu	36	7	158365144	158365144	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018051	exon5	c.C582T	p.Y194Y	.	.	.
FTSJ2	29960	broad.mit.edu	36	7	2245699	2245699	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013393	exon2	c.C178T	p.L60F	.	.	.
TASP1	55617	broad.mit.edu	36	20	13411941	13411941	+	Silent	SNP	A	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017714	exon11	c.T918C	p.C306C	.	.	.
FLRT3	23767	broad.mit.edu	36	20	14255773	14255773	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198391	exon3	c.T380A	p.I127N	.	.	.
CSRP2BP	57325	broad.mit.edu	36	20	18111911	18111911	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020536	exon8	c.C1953G	p.I651M	.	.	.
CSRP2BP	57325	broad.mit.edu	36	20	18113310	18113310	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020536	exon9	c.C2049T	p.V683V	.	.	.
CHMP4B	128866	broad.mit.edu	36	20	31903618	31903618	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176812	exon4	c.C558T	p.P186P	.	.	.
YTHDF1	54915	broad.mit.edu	36	20	61305510	61305510	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017798	exon4	c.C227A	p.S76Y	.	.	.
CECR5	27440	broad.mit.edu	36	22	16004004	16004004	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033070	exon5	c.C555G	p.D185E	.	.	.
HKR1	284459	broad.mit.edu	36	19	42546012	42546012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181786	exon6	c.C1475T	p.T492M	.	.	.
SIGLEC11	114132	broad.mit.edu	36	19	55145050	55145051	+	Missense_Mutation	DNP	CC	AA	AA	novel		TCGA-AG-3898-01	TCGA-AG-3898-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135163	exon10	c.1797_1798TT	.	.	.	.
ZNF578	147660	broad.mit.edu	36	19	57705992	57705992	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099694	exon6	c.G546A	p.K182K	.	.	.
ZNF415	55786	broad.mit.edu	36	19	58304759	58304759	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001136038	exon4	c.T351A	p.N117K	.	.	.
MUC16	94025	broad.mit.edu	36	19	8936143	8936143	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.C12303T	p.G4101G	.	.	.
FAM167A	83648	broad.mit.edu	36	8	11319323	11319323	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053279	exon3	c.A614T	p.N205I	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113392491	113392491	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198123	exon50	c.C7777A	p.R2593S	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113634048	113634048	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198123	exon26	c.A4312G	p.N1438D	.	.	.
KIAA0196	9897	broad.mit.edu	36	8	126157774	126157774	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014846	exon7	c.T862G	p.W288G	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17617690	17617690	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001001925	exon4	c.C2288A	p.A763D	.	.	.
ZNF395	55893	broad.mit.edu	36	8	28266727	28266727	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018660	exon5	c.A701C	p.H234P	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930712	77930712	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon10	c.C9000T	p.G3000G	.	.	.
HSPA6	3310	broad.mit.edu	36	1	159762768	159762768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002155	exon1	c.G1696A	p.E566K	.	.	.
CFHR5	81494	broad.mit.edu	36	1	195219851	195219851	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030787	exon3	c.G391T	p.E131X	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231548931	231548931	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032435	exon2	c.C926T	p.A309V	.	.	.
CEP170	9859	broad.mit.edu	36	1	241395644	241395644	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042405	exon12	c.A1947T	p.K649N	.	.	.
OR1C1	26188	broad.mit.edu	36	1	245987522	245987522	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012353	exon1	c.C810T	p.S270S	.	.	.
OR1C1	26188	broad.mit.edu	36	1	245987739	245987739	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012353	exon1	c.T593C	p.I198T	.	.	.
PUM1	9698	broad.mit.edu	36	1	31213854	31213854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001020658	exon11	c.C1579T	p.L527F	.	.	.
RNF19B	127544	broad.mit.edu	36	1	33186462	33186462	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153341	exon3	c.T934A	p.C312S	.	.	.
ABCA4	24	broad.mit.edu	36	1	94247009	94247009	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000350	exon41	c.C5721T	p.A1907A	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105279850	105279850	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001077244	exon8	c.G986A	p.G329E	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56832900	56832900	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033396	exon6	c.G3861A	p.L1287L	.	.	.
FADS2	9415	broad.mit.edu	36	11	61364404	61364404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004265	exon3	c.G341A	p.R114Q	.	.	.
OR2AG2	338755	broad.mit.edu	36	11	6746085	6746085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004490	exon1	c.G680A	p.R227H	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119379649	119379649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024581	exon5	c.C1492T	p.H498Y	.	.	.
SYTL3	94120	broad.mit.edu	36	6	159098240	159098240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009991	exon13	c.G943A	p.A315T	.	.	.
HSP90AB1	3326	broad.mit.edu	36	6	44327514	44327514	+	Silent	SNP	C	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007355	exon9	c.C1377A	p.T459T	.	.	.
GPR110	266977	broad.mit.edu	36	6	47104691	47104691	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153840	exon2	c.G66A	p.L22L	.	.	.
IRAK1BP1	134728	broad.mit.edu	36	6	79651825	79651825	+	Silent	SNP	A	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010844	exon2	c.A327T	p.I109I	.	.	.
NEK8	284086	broad.mit.edu	36	17	24088509	24088509	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178170	exon5	c.G677A	p.R226Q	.	.	.
LASP1	3927	broad.mit.edu	36	17	34328482	34328482	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006148	exon7	c.C711T	p.D237D	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005862	exon24	c.G2434A	p.V812I	ERBB2,stomach,NS,Substitution - Missense,0	.	.
KRT38	8687	broad.mit.edu	36	17	36847204	36847204	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006771	exon7	c.G1357A	p.G453R	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73557861	73557861	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018996	exon4	c.G1123A	p.V375I	.	.	.
HSF2BP	11077	broad.mit.edu	36	21	43774266	43774266	+	Silent	SNP	T	C	C	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007031	exon9	c.A801G	p.P267P	.	.	.
POLR3E	55718	broad.mit.edu	36	16	22233914	22233914	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018119	exon9	c.C526T	p.R176W	.	.	.
RNPS1	10921	broad.mit.edu	36	16	2252777	2252777	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080594	exon5	c.G487A	p.V163M	.	.	.
USP10	9100	broad.mit.edu	36	16	83363711	83363711	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005153	exon12	c.C2062T	p.R688X	.	.	.
TATDN2	9797	broad.mit.edu	36	3	10277277	10277277	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014760	exon3	c.C871T	p.R291X	.	.	.
WDR52	55779	broad.mit.edu	36	3	114621655	114621655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001164496	exon5	c.G469A	p.A157T	.	.	.
ACAD9	28976	broad.mit.edu	36	3	130110554	130110554	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014049	exon14	c.G1407A	p.R469R	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152638859	152638859	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178145	exon2	c.C261T	p.C87C	.	.	.
IL17RD	54756	broad.mit.edu	36	3	57111586	57111586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017563	exon10	c.G940A	p.A314T	.	.	.
FAM109A	144717	broad.mit.edu	36	12	110285619	110285619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177996	exon4	c.C35T	p.A12V	.	.	.
SLC38A1	81539	broad.mit.edu	36	12	44887623	44887623	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001077484	exon7	c.G437A	p.G146E	.	.	.
KCNA6	3742	broad.mit.edu	36	12	4790155	4790155	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002235	exon1	c.C687T	p.D229D	.	.	.
CEP290	80184	broad.mit.edu	36	12	87049074	87049074	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_025114	exon7	c.A494T	p.E165V	.	.	.
TMPO	7112	broad.mit.edu	36	12	97451872	97451872	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003276	exon4	c.T1706G	p.L569R	.	.	.
MKRN3	7681	broad.mit.edu	36	15	21362792	21362792	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005664	exon1	c.G770T	p.S257I	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23498162	23498162	+	Silent	SNP	G	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024490	exon13	c.C2754A	p.T918T	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45851096	45851096	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153616	exon17	c.C2819A	p.T940K	.	.	.
ADH7	131	broad.mit.edu	36	4	100568269	100568269	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000673	exon4	c.C381T	p.S127S	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123048085	123048085	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003305	exon6	c.C1661T	p.A554V	.	.	.
LRBA	987	broad.mit.edu	36	4	151576210	151576210	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006726	exon47	c.G7055A	p.R2352H	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018315	exon8	c.C1153T	p.R385C	FBXW7,large_intestine,NS,Substitution - Missense,+1	.	.
LPHN3	23284	broad.mit.edu	36	4	62592849	62592849	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015236	exon22	c.G3597A	p.A1199A	.	.	.
C4orf37	285555	broad.mit.edu	36	4	99112504	99112504	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_174952	exon7	c.T883G	p.F295V	.	.	.
ARHGAP36	158763	broad.mit.edu	36	X	130045451	130045451	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144967	exon4	c.C382T	p.R128C	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21398823	21398823	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168649	exon5	c.A538G	p.T180A	.	.	.
POLA1	5422	broad.mit.edu	36	X	24740748	24740748	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016937	exon29	c.G3125A	p.G1042E	.	.	.
ZNF630	57232	broad.mit.edu	36	X	47803308	47803308	+	Silent	SNP	A	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190255	exon5	c.T1425C	p.C475C	.	.	.
AR	367	broad.mit.edu	36	X	66822655	66822655	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011645	exon3	c.G251A	p.R84H	.	.	.
ZCCHC5	203430	broad.mit.edu	36	X	77799869	77799869	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152694	exon2	c.T705G	p.D235E	.	.	.
SHROOM2	357	broad.mit.edu	36	X	9822668	9822668	+	Silent	SNP	C	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001649	exon4	c.C720A	p.G240G	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99438371	99438371	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001105243	exon5	c.G2866A	p.E956K	.	.	.
PXDN	7837	broad.mit.edu	36	2	1631586	1631586	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012293	exon17	c.G2973T	p.W991C	.	.	.
TUBA4A	7277	broad.mit.edu	36	2	219823569	219823569	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006000	exon4	c.G1096A	p.G366S	.	.	.
WDR69	164781	broad.mit.edu	36	2	228466859	228466859	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178821	exon5	c.C422A	p.A141E	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23831035	23831035	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017552	exon26	c.C4192T	p.R1398C	.	.	.
NDUFA10	4705	broad.mit.edu	36	2	240609435	240609435	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004544	exon3	c.C312T	p.L104L	.	.	.
TP53I3	9540	broad.mit.edu	36	2	24159402	24159402	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_147184	exon3	c.C263T	p.A88V	.	.	.
PPM1B	5495	broad.mit.edu	36	2	44282413	44282413	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002706	exon2	c.C571T	p.R191C	.	.	.
USP39	10713	broad.mit.edu	36	2	85725697	85725697	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006590	exon11	c.C1543T	p.R515W	.	.	.
FAHD2B	151313	broad.mit.edu	36	2	97113466	97113466	+	Silent	SNP	T	C	C	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199336	exon7	c.A828G	p.L276L	.	.	.
NTNG2	84628	broad.mit.edu	36	9	134063739	134063739	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032536	exon3	c.C779T	p.A260V	.	.	.
ARHGEF7	8874	broad.mit.edu	36	13	110724253	110724253	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113512	exon9	c.C1078T	p.L360L	.	.	.
LRCH1	23143	broad.mit.edu	36	13	46158088	46158088	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001164211	exon5	c.G733A	p.V245M	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57106286	57106286	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040429	exon1	c.C1605T	p.Y535Y	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114891065	114891065	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001146284	exon5	c.G616A	p.G206R	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118210728	118210728	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011709	exon7	c.C744T	p.H248H	.	.	.
LHPP	64077	broad.mit.edu	36	10	126166986	126166986	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167880	exon3	c.C319T	p.R107C	.	.	.
CUBN	8029	broad.mit.edu	36	10	16956461	16956461	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001081	exon58	c.G9154T	p.A3052S	.	.	.
TLL2	7093	broad.mit.edu	36	10	98146940	98146940	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012465	exon11	c.G1377A	p.A459A	.	.	.
GOLGA7B	401647	broad.mit.edu	36	10	99613934	99613934	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001010917	exon4	c.G311A	p.R104H	.	.	.
APC	324	broad.mit.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112202311	112202311	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3067G	p.Q1023E	APC,soft_tissue,fibrous_tissue_and_uncertain_origin,Substitution - Nonsense,0	.	.
FEM1C	56929	broad.mit.edu	36	5	114888663	114888663	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020177	exon3	c.G1095A	p.L365L	.	.	.
FTMT	94033	broad.mit.edu	36	5	121215926	121215926	+	Silent	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177478	exon1	c.C369T	p.T123T	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135720662	135720662	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020389	exon2	c.C313T	p.R105W	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140462006	140462006	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.G1589A	p.R530H	.	.	.
GPX3	2878	broad.mit.edu	36	5	150387742	150387742	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002084	exon5	c.G539A	p.R180H	.	.	.
CDHR2	54825	broad.mit.edu	36	5	175944173	175944173	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001171976	exon19	c.C2285T	p.P762L	.	.	.
RNF130	55819	broad.mit.edu	36	5	179337877	179337877	+	Silent	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018434	exon5	c.C780T	p.D260D	.	.	.
CDH12	1010	broad.mit.edu	36	5	21787702	21787702	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004061	exon15	c.C2286A	p.D762E	.	.	.
CDH9	1007	broad.mit.edu	36	5	26917219	26917219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016279	exon12	c.G2153A	p.R718Q	.	.	.
BHMT2	23743	broad.mit.edu	36	5	78412404	78412404	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017614	exon4	c.C397T	p.R133X	.	.	.
ERAP2	64167	broad.mit.edu	36	5	96278922	96278922	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3898-01	TCGA-AG-3898-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022350	exon19	c.G2740A	p.V914M	.	.	.