Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ATPBD4	89978	broad.mit.edu	36	15	33451384	33451385	+	Splice_Site	INS	-	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
ZAN	7455	broad.mit.edu	36	7	100172128	100172128	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173059	exon4	c.C193T	p.R65X	.	.	.
MUC17	140453	broad.mit.edu	36	7	100469022	100469023	+	Missense_Mutation	DNP	TT	AC	AC	novel		TCGA-AG-3902-01	TCGA-AG-3902-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040105	exon3	c.7605_7606AC	.	.	.	.
PHF14	9678	broad.mit.edu	36	7	10988857	10988857	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014660	exon3	c.C446G	p.A149G	.	.	.
ANKMY2	57037	broad.mit.edu	36	7	16633245	16633245	+	Silent	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020319	exon3	c.A216C	p.V72V	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18654025	18654025	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178423	exon10	c.G1119A	p.P373P	.	.	.
LANCL2	55915	broad.mit.edu	36	7	55460593	55460593	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018697	exon7	c.G1161T	p.K387N	.	.	.
ASNS	440	broad.mit.edu	36	7	97320365	97320365	+	Silent	SNP	T	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183356	exon13	c.A1419G	p.G473G	.	.	.
TAF6	6878	broad.mit.edu	36	7	99544069	99544069	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005641	exon13	c.C1315T	p.R439C	.	.	.
CENPB	1059	broad.mit.edu	36	20	3713546	3713546	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001810	exon1	c.G1585A	p.D529N	.	.	.
DEFB126	81623	broad.mit.edu	36	20	74092	74092	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030931	exon2	c.G95A	p.G32E	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30687748	30687748	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015382	exon15	c.A2426T	p.E809V	.	.	.
EXOC5	10640	broad.mit.edu	36	14	56746427	56746427	+	Silent	SNP	A	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006544	exon16	c.T1719G	p.T573T	.	.	.
TOMM20L	387990	broad.mit.edu	36	14	57943849	57943849	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207377	exon4	c.G315A	p.E105E	.	.	.
GPHN	10243	broad.mit.edu	36	14	66716063	66716063	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001024218	exon21	c.A1996C	p.K666Q	.	.	.
FAM164C	79696	broad.mit.edu	36	14	74608362	74608362	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024643	exon2	c.G1333A	p.A445T	.	.	.
EML1	2009	broad.mit.edu	36	14	99430787	99430787	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001008707	exon7	c.G673C	p.D225H	.	.	.
SLC25A18	83733	broad.mit.edu	36	22	16450018	16450018	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031481	exon8	c.A526C	p.T176P	.	.	.
ZNF74	7625	broad.mit.edu	36	22	19091176	19091176	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003426	exon5	c.C1853T	p.A618V	.	.	.
NPTXR	23467	broad.mit.edu	36	22	37552624	37552624	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014293	exon3	c.G925A	p.V309M	.	.	.
NFIC	4782	broad.mit.edu	36	19	3385304	3385304	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005597	exon5	c.T739G	p.F247V	.	.	.
PDCD2L	84306	broad.mit.edu	36	19	39608820	39608820	+	Silent	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032346	exon7	c.A1032G	p.E344E	.	.	.
CADM4	199731	broad.mit.edu	36	19	48822880	48822880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_145296	exon4	c.G395A	p.R132Q	.	.	.
EXOC3L2	90332	broad.mit.edu	36	19	50408423	50408423	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138568	exon10	c.G974A	p.R325H	.	.	.
RAB11B	9230	broad.mit.edu	36	19	8373073	8373073	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004218	exon3	c.G340T	p.D114Y	.	.	.
FZD6	8323	broad.mit.edu	36	8	104406184	104406184	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164615	exon4	c.G674A	p.R225K	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106884190	106884190	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012082	exon8	c.C2704T	p.R902X	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110573332	110573332	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_177531	exon62	c.C10169T	p.S3390L	.	.	.
KIAA0196	9897	broad.mit.edu	36	8	126118665	126118665	+	Silent	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014846	exon26	c.T3177C	p.N1059N	.	.	.
TG	7038	broad.mit.edu	36	8	133968710	133968710	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003235	exon9	c.G1911A	p.W637X	.	.	.
DUSP26	78986	broad.mit.edu	36	8	33570720	33570720	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024025	exon3	c.C309T	p.P103P	.	.	.
RB1CC1	9821	broad.mit.edu	36	8	53731648	53731648	+	Silent	SNP	T	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083617	exon15	c.A3294G	p.E1098E	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6290030	6290030	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024596	exon8	c.A1379T	p.D460V	.	.	.
SGK3	23678	broad.mit.edu	36	8	67934216	67934216	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033578	exon17	c.T1337C	p.I446T	.	.	.
COPS5	10987	broad.mit.edu	36	8	68120649	68120649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006837	exon7	c.C872T	p.T291M	.	.	.
PREX2	80243	broad.mit.edu	36	8	69102067	69102067	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_025170	exon5	c.A498T	p.L166F	.	.	.
WNT2B	7482	broad.mit.edu	36	1	112859222	112859222	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004185	exon3	c.G329C	p.G110A	.	.	.
HAO2	51179	broad.mit.edu	36	1	119725298	119725298	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016527	exon2	c.G67T	p.D23Y	.	.	.
ELF3	1999	broad.mit.edu	36	1	200249028	200249028	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001114309	exon7	c.G784T	p.E262X	.	.	.
SOX13	9580	broad.mit.edu	36	1	202358674	202358674	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005686	exon10	c.G1094A	p.S365N	.	.	.
CENPF	1063	broad.mit.edu	36	1	212884662	212884662	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016343	exon13	c.T5126C	p.I1709T	.	.	.
ACTN2	88	broad.mit.edu	36	1	234989664	234989664	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001103	exon19	c.G2319A	p.M773I	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245133957	245133957	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015446	exon7	c.G910A	p.E304K	.	.	.
ZSCAN20	7579	broad.mit.edu	36	1	33733264	33733264	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_145238	exon8	c.C2733G	p.S911R	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36089116	36089116	+	Silent	SNP	G	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017629	exon17	c.G2352C	p.L784L	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37097412	37097412	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000831	exon7	c.G988A	p.V330I	.	.	.
NRD1	4898	broad.mit.edu	36	1	52047641	52047641	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002525	exon19	c.G2128T	p.E710X	.	.	.
DAB1	1600	broad.mit.edu	36	1	57309797	57309797	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021080	exon8	c.C544G	p.Q182E	.	.	.
ROR1	4919	broad.mit.edu	36	1	64397294	64397294	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005012	exon8	c.A1217G	p.Y406C	.	.	.
GBP7	388646	broad.mit.edu	36	1	89388690	89388690	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_207398	exon6	c.T782A	p.F261Y	.	.	.
LRRC8C	84230	broad.mit.edu	36	1	89951282	89951282	+	Silent	SNP	A	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032270	exon3	c.A565C	p.R189R	.	.	.
LZIC	84328	broad.mit.edu	36	1	9919178	9919178	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032368	exon2	c.T87A	p.D29E	.	.	.
OR51A7	119687	broad.mit.edu	36	11	4885852	4885852	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004749	exon1	c.G677A	p.S226N	.	.	.
OR51B2	79345	broad.mit.edu	36	11	5301972	5301972	+	Silent	SNP	G	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033180	exon1	c.C132G	p.L44L	.	.	.
OR5T1	390155	broad.mit.edu	36	11	55800513	55800513	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004745	exon1	c.A823C	p.S275R	.	.	.
DPF2	5977	broad.mit.edu	36	11	64870296	64870296	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006268	exon9	c.C907T	p.H303Y	.	.	.
RELA	5970	broad.mit.edu	36	11	65182440	65182440	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021975	exon8	c.C771T	p.Y257Y	.	.	.
RBM14	10432	broad.mit.edu	36	11	66149000	66149000	+	Silent	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006328	exon2	c.T1077G	p.R359R	.	.	.
FAT3	120114	broad.mit.edu	36	11	92171159	92171159	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001008781	exon9	c.C5332G	p.L1778V	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12197406	12197406	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002114	exon3	c.A44G	p.K15R	.	.	.
RANBP9	10048	broad.mit.edu	36	6	13805020	13805020	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005493	exon2	c.A659C	p.K220T	.	.	.
NMBR	4829	broad.mit.edu	36	6	142438607	142438607	+	Silent	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002511	exon3	c.G1044A	p.E348E	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161390008	161390008	+	Silent	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006724	exon3	c.C714G	p.V238V	.	.	.
PRL	5617	broad.mit.edu	36	6	22398541	22398541	+	Silent	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000948	exon4	c.G333C	p.L111L	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37529020	37529020	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015050	exon8	c.A731G	p.D244G	.	.	.
DNAH8	1769	broad.mit.edu	36	6	39047390	39047390	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001371	exon81	c.C11845T	p.R3949X	.	.	.
TREM1	54210	broad.mit.edu	36	6	41358449	41358449	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018643	exon2	c.A68C	p.K23T	.	.	.
OGFRL1	79627	broad.mit.edu	36	6	72068159	72068159	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024576	exon7	c.G1042A	p.D348N	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16534465	16534465	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014695	exon1	c.G26A	p.R9Q	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005862	exon24	c.G2434A	p.V812I	ERBB2,stomach,NS,Substitution - Missense,0	.	.
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	unknown	TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.G818A	p.R273H	TP53,central_nervous_system,brain,Substitution - Missense,-1	.	.
DSCAM	1826	broad.mit.edu	36	21	40372527	40372527	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001389	exon26	c.C4668T	p.C1556C	.	.	.
ITGB2	3689	broad.mit.edu	36	21	45131117	45131117	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127491	exon15	c.C2209T	p.R737C	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10417664	10417664	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001683	exon5	c.G754A	p.V252M	.	.	.
CLSTN2	64084	broad.mit.edu	36	3	141767705	141767705	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022131	exon17	c.G2788C	p.G930R	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166388421	166388421	+	Silent	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014926	exon2	c.G2892A	p.P964P	.	.	.
GNB4	59345	broad.mit.edu	36	3	180617007	180617007	+	Silent	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021629	exon5	c.T235C	p.L79L	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78749577	78749577	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002941	exon27	c.G4180C	p.D1394H	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128124504	128124504	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_133448	exon9	c.G3169A	p.D1057N	.	.	.
STX2	2054	broad.mit.edu	36	12	129863475	129863475	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194356	exon4	c.A260C	p.K87T	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.
IPO8	10526	broad.mit.edu	36	12	30710046	30710046	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006390	exon12	c.G1222T	p.V408L	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31431875	31431875	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144973	exon21	c.C3754T	p.R1252X	.	.	.
SOAT2	8435	broad.mit.edu	36	12	51795540	51795540	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003578	exon6	c.G543A	p.P181P	.	.	.
CALCOCO1	57658	broad.mit.edu	36	12	52403781	52403781	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020898	exon4	c.C313T	p.R105C	.	.	.
HNRNPA1	3178	broad.mit.edu	36	12	52961860	52961860	+	Silent	SNP	A	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031157	exon3	c.A147C	p.P49P	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	97716847	97716847	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_181670	exon8	c.T1013A	p.M338K	.	.	.
RYR3	6263	broad.mit.edu	36	15	31715234	31715234	+	Silent	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon26	c.C3303T	p.V1101V	.	.	.
LEO1	123169	broad.mit.edu	36	15	50045985	50045985	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138792	exon2	c.T67A	p.S23T	.	.	.
CCPG1	9236	broad.mit.edu	36	15	53451324	53451324	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004748	exon6	c.C665A	p.A222D	.	.	.
TLN2	83660	broad.mit.edu	36	15	60850568	60850568	+	Silent	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015059	exon39	c.C5310T	p.L1770L	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83203527	83203527	+	Silent	SNP	C	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020778	exon7	c.C4473A	p.S1491S	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128871231	128871231	+	Silent	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031291	exon1	c.C81T	p.G27G	.	.	.
TTC29	83894	broad.mit.edu	36	4	147944176	147944176	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031956	exon11	c.G1213C	p.A405P	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183950650	183950650	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080477	exon25	c.G5831A	p.R1944Q	.	.	.
AASDH	132949	broad.mit.edu	36	4	56939316	56939316	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181806	exon4	c.C423T	p.L141L	.	.	.
UGT2B4	7363	broad.mit.edu	36	4	70395832	70395832	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021139	exon1	c.C337T	p.Q113X	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21537624	21537624	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001168649	exon19	c.G2513T	p.G838V	.	.	.
RBM10	8241	broad.mit.edu	36	X	46913734	46913734	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005676	exon3	c.C94T	p.R32X	.	.	.
PABPC5	140886	broad.mit.edu	36	X	90577568	90577568	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080832	exon2	c.C336A	p.N112K	.	.	.
GCC2	9648	broad.mit.edu	36	2	108453715	108453715	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181453	exon6	c.A1498G	p.K500E	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137530682	137530682	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080427	exon2	c.G269A	p.R90H	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178967363	178967363	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032523	exon24	c.G2651T	p.R884L	.	.	.
KCNS3	3790	broad.mit.edu	36	2	17976360	17976360	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002252	exon3	c.A604T	p.M202L	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189618783	189618783	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000393	exon46	c.A3297C	p.Q1099H	.	.	.
ALS2CR12	130540	broad.mit.edu	36	2	201872227	201872227	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127391	exon12	c.A921T	p.E307D	.	.	.
NCL	4691	broad.mit.edu	36	2	232034655	232034655	+	Silent	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005381	exon3	c.T453C	p.D151D	.	.	.
C5	727	broad.mit.edu	36	9	122791723	122791723	+	Missense_Mutation	SNP	A	T	T	rs41311881	by-frequency	TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001735	exon24	c.T3098A	p.I1033N	.	.	.
PTGS1	5742	broad.mit.edu	36	9	124194466	124194466	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000962	exon11	c.C1622T	p.P541L	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124791562	124791562	+	Silent	SNP	A	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012197	exon5	c.A756T	p.I252I	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125242507	125242507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024820	exon19	c.C1441T	p.P481S	.	.	.
SETX	23064	broad.mit.edu	36	9	134192714	134192714	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015046	exon10	c.A4092C	p.R1364S	.	.	.
ELAVL2	1993	broad.mit.edu	36	9	23691471	23691471	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171197	exon5	c.A619C	p.S207R	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89452098	89452098	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004938	exon14	c.T1289A	p.F430Y	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89691615	89691615	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178828	exon4	c.A2393G	p.K798R	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41363571	41363571	+	Nonsense_Mutation	SNP	G	T	T	rs57255143	unknown	TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015058	exon5	c.C636A	p.Y212X	.	.	.
AKAP11	11215	broad.mit.edu	36	13	41773055	41773055	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016248	exon8	c.A2173G	p.I725V	.	.	.
SERPINE3	647174	broad.mit.edu	36	13	50827219	50827219	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101320	exon5	c.A939C	p.L313F	.	.	.
PAX2	5076	broad.mit.edu	36	10	102500622	102500622	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003987	exon3	c.G394A	p.V132I	.	.	.
SEPHS1	22929	broad.mit.edu	36	10	13426839	13426839	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001195604	exon2	c.A118G	p.K40E	.	.	.
KNDC1	85442	broad.mit.edu	36	10	134863002	134863002	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152643	exon15	c.G2809A	p.A937T	.	.	.
ENKUR	219670	broad.mit.edu	36	10	25313718	25313718	+	Silent	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145010	exon5	c.C717T	p.H239H	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37548558	37548558	+	Silent	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052997	exon34	c.C3744T	p.N1248N	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252294	55252294	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001142767	exon31	c.A5078G	p.N1693S	.	.	.
TLL2	7093	broad.mit.edu	36	10	98123409	98123409	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012465	exon19	c.A2596T	p.M866L	.	.	.
APC	324	broad.mit.edu	36	5	112203052	112203052	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.G3808T	p.G1270X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
SLC27A6	28965	broad.mit.edu	36	5	128330175	128330175	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017372	exon1	c.G446A	p.R149H	.	.	.
RAPGEF6	51735	broad.mit.edu	36	5	130956056	130956056	+	Nonsense_Mutation	SNP	G	C	C	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164387	exon4	c.C200G	p.S67X	.	.	.
C5orf15	56951	broad.mit.edu	36	5	133320459	133320459	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020199	exon3	c.A788T	p.Y263F	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140208410	140208410	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014005	exon1	c.C146T	p.A49V	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140243644	140243644	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031865	exon1	c.G1607A	p.S536N	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606593	140606593	+	Silent	SNP	C	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018935	exon1	c.C1263A	p.I421I	.	.	.
GABRB2	2561	broad.mit.edu	36	5	160690530	160690530	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000813	exon9	c.A1015T	p.K339X	.	.	.
PRLR	5618	broad.mit.edu	36	5	35104089	35104089	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000949	exon9	c.G841C	p.A281P	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73201765	73201765	+	Silent	SNP	C	T	T	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177693	exon21	c.C2541T	p.V847V	.	.	.
POU5F2	134187	broad.mit.edu	36	5	93102749	93102749	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-3902-01	TCGA-AG-3902-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153216	exon1	c.C277T	p.R93X	.	.	.