Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CNTNAP2	26047	hgsc.bcm.edu	36	7	147557706	147557706	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014141	exon20	c.C3283T	p.R1095X	.	.	.
AKAP9	10142	hgsc.bcm.edu	36	7	91469565	91469565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_147185	exon8	c.G2398A	p.E800K	.	.	.
ADAM20	8748	hgsc.bcm.edu	36	14	70060038	70060038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003814	exon2	c.C1340T	p.P447L	.	.	.
SYN3	8224	hgsc.bcm.edu	36	22	31239719	31239719	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001135774	exon14	c.G1700A	p.R567H	.	.	.
NFAM1	150372	hgsc.bcm.edu	36	22	41158220	41158220	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145912	exon1	c.G88A	p.V30M	.	.	.
B3GNT3	10331	hgsc.bcm.edu	36	19	17783476	17783476	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014256	exon3	c.T664G	p.F222V	.	.	.
KIR3DL2	3812	hgsc.bcm.edu	36	19	60057160	60057160	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006737	exon4	c.G502A	p.V168I	.	.	.
XKR6	286046	hgsc.bcm.edu	36	8	10819712	10819712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173683	exon2	c.G803A	p.R268Q	.	.	.
SNX27	81609	hgsc.bcm.edu	36	1	149897493	149897493	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030918	exon3	c.C702T	p.A234A	.	.	.
OR6K2	81448	hgsc.bcm.edu	36	1	156936212	156936212	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005279	exon1	c.C855G	p.F285L	.	.	.
ABL2	27	hgsc.bcm.edu	36	1	177344264	177344264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001168239	exon12	c.C2344T	p.P782S	.	.	.
KIAA1804	84451	hgsc.bcm.edu	36	1	231564539	231564539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032435	exon5	c.C1429T	p.R477W	.	.	.
TARBP1	6894	hgsc.bcm.edu	36	1	232649234	232649234	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005646	exon12	c.G2072T	p.C691F	.	.	.
SRRM1	10250	hgsc.bcm.edu	36	1	24854121	24854121	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005839	exon9	c.A1229G	p.K410R	.	.	.
CKAP5	9793	hgsc.bcm.edu	36	11	46738774	46738774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001008938	exon33	c.G4358A	p.R1453H	.	.	.
UTRN	7402	hgsc.bcm.edu	36	6	145114722	145114722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007124	exon55	c.C8296A	p.P2766T	.	.	.
TMEM132E	124842	hgsc.bcm.edu	36	17	29983869	29983869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207313	exon7	c.G1246A	p.G416R	.	.	.
CCDC103	388389	hgsc.bcm.edu	36	17	40335541	40335541	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_213607	exon4	c.G559A	p.E187K	.	.	.
NFATC3	4775	hgsc.bcm.edu	36	16	66713708	66713708	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173163	exon2	c.T421C	p.L141L	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46858785	46858785	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005359	exon12	c.G1609T	p.D537Y	SMAD4,large_intestine,NS,Substitution - Missense,0	.	.
CCBP2	1238	hgsc.bcm.edu	36	3	42881471	42881471	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001296	exon3	c.G473A	p.R158Q	.	.	.
LRMP	4033	hgsc.bcm.edu	36	12	25145511	25145511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006152	exon15	c.C874T	p.P292S	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
TUBA1C	84790	hgsc.bcm.edu	36	12	47949893	47949893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032704	exon3	c.G242A	p.G81D	.	.	.
KRT81	3887	hgsc.bcm.edu	36	12	50967674	50967674	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002281	exon6	c.G999A	p.T333T	.	.	.
MYF5	4617	hgsc.bcm.edu	36	12	79636848	79636848	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005593	exon3	c.C655T	p.Q219X	.	.	.
ATP10A	57194	hgsc.bcm.edu	36	15	23477137	23477137	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024490	exon19	c.C3591T	p.N1197N	.	.	.
FBXO8	26269	hgsc.bcm.edu	36	4	175420513	175420513	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012180	exon2	c.G306A	p.A102A	.	.	.
EPHA5	2044	hgsc.bcm.edu	36	4	66150473	66150473	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004439	exon3	c.A391G	p.K131E	.	.	.
TMPRSS11A	339967	hgsc.bcm.edu	36	4	68492845	68492845	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182606	exon3	c.C239T	p.T80M	.	.	.
GLUD2	2747	hgsc.bcm.edu	36	X	120010604	120010604	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012084	exon1	c.C1385T	p.S462F	.	.	.
TIMP1	7076	hgsc.bcm.edu	36	X	47329651	47329651	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003254	exon4	c.G305A	p.R102H	.	.	.
VSIG4	11326	hgsc.bcm.edu	36	X	65159418	65159418	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184831	exon6	c.G670A	p.E224K	.	.	.
CPXCR1	53336	hgsc.bcm.edu	36	X	87895759	87895759	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184771	exon3	c.C688T	p.R230C	.	.	.
KCNH7	90134	hgsc.bcm.edu	36	2	163000268	163000268	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173162	exon7	c.A1619G	p.Y540C	.	.	.
ATG16L1	55054	hgsc.bcm.edu	36	2	233863348	233863348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017974	exon12	c.G1256A	p.R419H	.	.	.
SEPT2	4735	hgsc.bcm.edu	36	2	241931865	241931865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001008491	exon10	c.G722C	p.G241A	.	.	.
MBOAT2	129642	hgsc.bcm.edu	36	2	9016146	9016146	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138799	exon2	c.C152T	p.T51I	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116838322	116838322	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002160	exon21	c.G5532A	p.T1844T	.	.	.
BAG1	573	hgsc.bcm.edu	36	9	33245912	33245912	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001172415	exon6	c.A554T	p.N185I	.	.	.
GFRA1	2674	hgsc.bcm.edu	36	10	117839318	117839318	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145453	exon8	c.A1106C	p.K369T	.	.	.
SEC23IP	11196	hgsc.bcm.edu	36	10	121653606	121653606	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007190	exon4	c.G928A	p.V310M	.	.	.
MYPN	84665	hgsc.bcm.edu	36	10	69596079	69596079	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032578	exon10	c.C1623T	p.N541N	.	.	.
MYST4	23522	hgsc.bcm.edu	36	10	76459367	76459367	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012330	exon18	c.G4779A	p.Q1593Q	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202443	112202443	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.A3199T	p.K1067X	.	.	.
PCDHGC5	56097	hgsc.bcm.edu	36	5	140850117	140850117	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018929	exon1	c.G1126C	p.D376H	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150905417	150905417	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon9	c.C5464T	p.L1822L	.	.	.
ZNF366	167465	hgsc.bcm.edu	36	5	71792849	71792849	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152625	exon2	c.G231A	p.R77R	.	.	.
TBC1D9B	23061	hgsc.bcm.edu	36	5	179234668	179234668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-A008-01A-01W-A005-10	TCGA-AG-A008-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198868	exon12	c.C2026T	p.L676F	.	.	.