Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PCCB	5096	hgsc.bcm.edu	36	3	137528769	137528770	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000532	exon12	c.1281_1282insT	p.V427fs	.	.	.
ACVR2B	93	hgsc.bcm.edu	36	3	38493797	38493798	+	Frame_Shift_Ins	INS	-	-	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001106	exon2	c.68_69insC	p.E23fs	.	.	.
PTPRG	5793	hgsc.bcm.edu	36	3	62164403	62164404	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002841	exon12	c.1894_1895insG	p.R632fs	.	.	.
TROAP	10024	hgsc.bcm.edu	36	12	48010402	48010403	+	Frame_Shift_Ins	INS	-	-	CA	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005480	exon13	c.1507_1508insCA	p.P503fs	.	.	.
MLL3	58508	hgsc.bcm.edu	36	7	151576004	151576005	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_170606	exon14	c.2448_2449insA	p.Y816_I817delinsX	.	.	.
MEPCE	56257	hgsc.bcm.edu	36	7	99868548	99868549	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_019606	exon2	c.1742_1743insG	p.L581fs	.	.	.
NR4A2	4929	hgsc.bcm.edu	36	2	156892686	156892687	+	Frame_Shift_Ins	INS	-	-	TA	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_006186	exon5	c.1081_1082insTA	p.P361fs	.	.	.
C19orf10	56005	hgsc.bcm.edu	36	19	4611748	4611749	+	Frame_Shift_Ins	INS	-	-	CATC	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_019107	exon4	c.302_303insGATG	p.S101_Y102delinsX	.	.	.
NUP62	23636	hgsc.bcm.edu	36	19	55104496	55104497	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_153718	exon2	c.381_382insT	p.S127fs	.	.	.
NRG1	3084	hgsc.bcm.edu	36	8	32741288	32741289	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_013957	exon12	c.1740_1741insG	p.G580fs	.	.	.
PDE4B	5142	hgsc.bcm.edu	36	1	66610782	66610783	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001037341	exon17	c.2044_2045insT	p.L682fs	.	.	.
ARHGAP20	57569	hgsc.bcm.edu	36	11	109956706	109956707	+	Frame_Shift_Ins	INS	-	-	CA	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020809	exon16	c.2174_2175insTG	p.K725fs	.	.	.
MRGPRX4	117196	hgsc.bcm.edu	36	11	18152329	18152330	+	In_Frame_Ins	INS	-	-	TAC	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_054032	exon1	c.950_951insTAC	p.G317delinsGT	.	.	.
GYLTL1B	120071	hgsc.bcm.edu	36	11	45902687	45902688	+	Frame_Shift_Ins	INS	-	-	GG	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_152312	exon5	c.547_548insGG	p.K183fs	.	.	.
RBM4B	83759	hgsc.bcm.edu	36	11	66192945	66192946	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_031492	exon3	c.806_807insT	p.D269fs	.	.	.
SLC43A2	124935	hgsc.bcm.edu	36	17	1466703	1466704	+	Frame_Shift_Ins	INS	-	-	AG	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_152346	exon3	c.271_272insCT	p.A91fs	.	.	.
MRC2	9902	hgsc.bcm.edu	36	17	58097270	58097271	+	In_Frame_Ins	INS	-	-	TCT	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_006039	exon3	c.604_605insTCT	p.T202delinsIS	.	.	.
NAT9	26151	hgsc.bcm.edu	36	17	70279956	70279957	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_015654	exon5	c.390_391insA	p.S130fs	.	.	.
TMEM104	54868	hgsc.bcm.edu	36	17	70343924	70343925	+	In_Frame_Ins	INS	-	-	ACTGCA	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_017728	exon10	c.994_995insACTGCA	p.D332delinsDCN	.	.	.
UNC13D	201294	hgsc.bcm.edu	36	17	71337726	71337727	+	Frame_Shift_Ins	INS	-	-	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_199242	exon30	c.2932_2933insG	p.L978fs	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150928616	150928617	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001447	exon1	c.70_71insA	p.G24fs	.	.	.
PDZD2	23037	hgsc.bcm.edu	36	5	32134434	32134435	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_178140	exon22	c.8155_8156insA	p.P2719fs	.	.	.
SRRT	51593	hgsc.bcm.edu	36	7	100320103	100320103	+	Silent	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001128853	exon7	c.C936A	p.G312G	.	.	.
LAMB4	22798	hgsc.bcm.edu	36	7	107504721	107504721	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_007356	exon17	c.C2028T	p.I676I	.	.	.
NRCAM	4897	hgsc.bcm.edu	36	7	107667705	107667705	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001193584	exon4	c.G40A	p.A14T	.	.	.
FOXP2	93986	hgsc.bcm.edu	36	7	114055869	114055869	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001172766	exon4	c.C297T	p.I99I	.	.	.
FOXP2	93986	hgsc.bcm.edu	36	7	114057141	114057141	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001172766	exon5	c.C442T	p.L148F	.	.	.
FOXP2	93986	hgsc.bcm.edu	36	7	114058930	114058930	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001172766	exon6	c.C706T	p.Q236X	.	.	.
TSGA14	95681	hgsc.bcm.edu	36	7	129827314	129827314	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_018718	exon10	c.C775T	p.Q259X	.	.	.
BBS9	27241	hgsc.bcm.edu	36	7	33540109	33540109	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001033604	exon20	c.G2212A	p.D738N	.	.	.
KIAA1324L	222223	hgsc.bcm.edu	36	7	86380337	86380337	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001142749	exon14	c.G1851A	p.S617S	.	.	.
AKAP9	10142	hgsc.bcm.edu	36	7	91564442	91564442	+	Silent	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_147185	exon41	c.A10209G	p.K3403K	.	.	.
ARPC1B	10095	hgsc.bcm.edu	36	7	98823673	98823673	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_005720	exon4	c.A245T	p.K82M	.	.	.
TAF6	6878	hgsc.bcm.edu	36	7	99548415	99548415	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001190415	exon6	c.G627A	p.Q209Q	.	.	.
DNMT3B	1789	hgsc.bcm.edu	36	20	30853915	30853915	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_175848	exon19	c.G2149A	p.G717S	.	.	.
ZNFX1	57169	hgsc.bcm.edu	36	20	47299587	47299587	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_021035	exon14	c.C3381T	p.S1127S	.	.	.
ATP9A	10079	hgsc.bcm.edu	36	20	49779882	49779882	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_006045	exon2	c.G111A	p.R37R	.	.	.
EFCAB6	64800	hgsc.bcm.edu	36	22	42353696	42353696	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_198856	exon18	c.C1973T	p.P658L	.	.	.
MMP14	4323	hgsc.bcm.edu	36	14	22381546	22381546	+	Silent	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_004995	exon4	c.A468T	p.P156P	.	.	.
ATL1	51062	hgsc.bcm.edu	36	14	50157194	50157194	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001127713	exon10	c.G990A	p.K330K	.	.	.
SAV1	60485	hgsc.bcm.edu	36	14	50177254	50177254	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_021818	exon4	c.C914T	p.P305L	.	.	.
ZFYVE1	53349	hgsc.bcm.edu	36	14	72511290	72511290	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_178441	exon7	c.C692T	p.A231V	.	.	.
NGB	58157	hgsc.bcm.edu	36	14	76804622	76804622	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_021257	exon3	c.G261T	p.E87D	.	.	.
TSHR	7253	hgsc.bcm.edu	36	14	80675799	80675799	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_000369	exon9	c.C716T	p.T239I	.	.	.
CATSPERB	79820	hgsc.bcm.edu	36	14	91209034	91209034	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_024764	exon13	c.T1058C	p.I353T	.	.	.
NLGN4Y	22829	hgsc.bcm.edu	36	Y	15243706	15243706	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001164238	exon1	c.C313A	p.Q105K	.	.	.
PABPC1	26986	hgsc.bcm.edu	36	8	101791046	101791046	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002568	exon8	c.C1062T	p.N354N	.	.	.
UNQ9391	203074	hgsc.bcm.edu	36	8	10424608	10424608	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001197020	exon2	c.C336T	p.S112S	.	.	.
SH2D4A	63898	hgsc.bcm.edu	36	8	19295239	19295239	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_022071	exon9	c.T1179C	p.H393H	.	.	.
SH2D4A	63898	hgsc.bcm.edu	36	8	19295247	19295247	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_022071	exon9	c.T1187G	p.I396S	.	.	.
ST18	9705	hgsc.bcm.edu	36	8	53247176	53247176	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_014682	exon10	c.C798T	p.P266P	.	.	.
PLAG1	5324	hgsc.bcm.edu	36	8	57243316	57243316	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001114634	exon3	c.C67T	p.R23C	.	.	.
CA8	767	hgsc.bcm.edu	36	8	61341081	61341081	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_004056	exon3	c.G374A	p.R125H	.	.	.
TTPA	7274	hgsc.bcm.edu	36	8	64160988	64160988	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000370	exon1	c.C147G	p.D49E	.	.	.
PDP1	54704	hgsc.bcm.edu	36	8	95004424	95004424	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001161778	exon2	c.G1138A	p.E380K	.	.	.
APC2	10297	hgsc.bcm.edu	36	19	1413030	1413030	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005883	exon14	c.G1707A	p.A569A	.	.	.
AP1M1	8907	hgsc.bcm.edu	36	19	16180905	16180905	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_032493	exon5	c.A463C	p.N155H	.	.	.
ZNF556	80032	hgsc.bcm.edu	36	19	2827218	2827218	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	C	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_024967	exon3	c.A258C	p.K86N	.	.	.
ZNF556	80032	hgsc.bcm.edu	36	19	2829138	2829138	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_024967	exon4	c.G1182A	p.G394G	.	.	.
TSHZ3	57616	hgsc.bcm.edu	36	19	36460121	36460121	+	Silent	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020856	exon2	c.G2418C	p.V806V	.	.	.
U2AF1L4	199746	hgsc.bcm.edu	36	19	40927085	40927085	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001040425	exon3	c.C210T	p.L70L	.	.	.
ZNF781	163115	hgsc.bcm.edu	36	19	42852273	42852273	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152605	exon4	c.T617C	p.V206A	.	.	.
SIRT2	22933	hgsc.bcm.edu	36	19	44072212	44072212	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_030593	exon6	c.C278A	p.P93H	.	.	.
GSK3A	2931	hgsc.bcm.edu	36	19	47430619	47430619	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_019884	exon5	c.G718C	p.V240L	.	.	.
PRKD2	25865	hgsc.bcm.edu	36	19	51906071	51906071	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_016457	exon3	c.G444A	p.A148A	.	.	.
CPT1C	126129	hgsc.bcm.edu	36	19	54901091	54901091	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001136052	exon11	c.C1045A	p.Q349K	.	.	.
MUM1	84939	hgsc.bcm.edu	36	19	1317323	1317327	+	Frame_Shift_Del	DEL	GAGAT	GAGAT	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	GAGAT	GAGAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_032853	exon8	c.1307_1311del	p.436_437del	.	.	.
ZNF222	7673	hgsc.bcm.edu	36	19	49228670	49228671	+	Frame_Shift_Del	DEL	CA	CA	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_013360	exon4	c.1003_1004del	p.335_335del	.	.	.
NLRP11	204801	hgsc.bcm.edu	36	19	61012914	61012917	+	Frame_Shift_Del	DEL	CCTC	CCTC	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	CCTC	CCTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_145007	exon5	c.871_874del	p.291_292del	.	.	.
S1PR1	1901	hgsc.bcm.edu	36	1	101478260	101478260	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001400	exon2	c.G1132A	p.V378I	.	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13977950	13977950	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_012231	exon8	c.T1073G	p.F358C	.	.	.
GJA8	2703	hgsc.bcm.edu	36	1	145847225	145847225	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_005267	exon2	c.C519T	p.Y173Y	.	.	.
KPRP	448834	hgsc.bcm.edu	36	1	151000020	151000020	+	Silent	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001025231	exon2	c.G1332T	p.P444P	.	.	.
APOA1BP	128240	hgsc.bcm.edu	36	1	154828982	154828982	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_144772	exon4	c.C412G	p.P138A	.	.	.
FCRL5	83416	hgsc.bcm.edu	36	1	155764297	155764297	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_031281	exon9	c.G1694A	p.R565H	.	.	.
CD5L	922	hgsc.bcm.edu	36	1	156070981	156070981	+	Silent	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_005894	exon4	c.G558T	p.L186L	.	.	.
NOS1AP	9722	hgsc.bcm.edu	36	1	160593494	160593494	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014697	exon8	c.C883T	p.L295F	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175100103	175100103	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_004319	exon23	c.G3825A	p.T1275T	.	.	.
C1orf125	126859	hgsc.bcm.edu	36	1	177769560	177769560	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_144696	exon24	c.C2723T	p.S908L	.	.	.
CDC73	79577	hgsc.bcm.edu	36	1	191371200	191371200	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_024529	exon4	c.A364G	p.T122A	.	.	.
C4BPA	722	hgsc.bcm.edu	36	1	205384625	205384625	+	Silent	SNP	T	T	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000715	exon12	c.T1734A	p.I578I	.	.	.
LPGAT1	9926	hgsc.bcm.edu	36	1	210033041	210033041	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014873	exon3	c.G353A	p.G118E	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214532284	214532284	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_206933	exon10	c.C1696T	p.Q566X	.	.	.
ECE1	1889	hgsc.bcm.edu	36	1	21471846	21471846	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001113347	exon2	c.C390T	p.G130G	.	.	.
CDC42BPA	8476	hgsc.bcm.edu	36	1	225289098	225289098	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014826	exon24	c.G3009A	p.V1003V	.	.	.
PLD5	200150	hgsc.bcm.edu	36	1	240343849	240343849	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001195811	exon7	c.G850A	p.D284N	.	.	.
C1orf71	163882	hgsc.bcm.edu	36	1	244877231	244877231	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_152609	exon9	c.G1105T	p.A369S	.	.	.
SLC9A1	6548	hgsc.bcm.edu	36	1	27313150	27313150	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_003047	exon2	c.C567G	p.I189M	.	.	.
PRPF38A	84950	hgsc.bcm.edu	36	1	52643082	52643082	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_032864	exon1	c.A73C	p.I25L	.	.	.
LRRC8C	84230	hgsc.bcm.edu	36	1	89951748	89951748	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_032270	exon3	c.G1031A	p.R344H	.	.	.
LPPR4	9890	hgsc.bcm.edu	36	1	99544879	99544879	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001166252	exon6	c.T1843A	p.C615S	.	.	.
PALMD	54873	hgsc.bcm.edu	36	1	99924911	99924911	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_017734	exon4	c.C343T	p.R115W	.	.	.
CCNL2	81669	hgsc.bcm.edu	36	1	1312750	1312755	+	In_Frame_Del	DEL	CGGTGG	CGGTGG	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	CGGTGG	CGGTGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_030937	exon11	c.1282_1287del	p.428_429del	.	.	.
BEND3	57673	hgsc.bcm.edu	36	6	107498344	107498344	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001080450	exon5	c.C744T	p.L248L	.	.	.
ZBTB24	9841	hgsc.bcm.edu	36	6	109894156	109894156	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	G	T	G	Unknown	Valid	Germline	Phase_I	Capture	454	.	.	SOLID	NM_014797	exon7	c.A1685C	p.N562T	.	.	.
GPR6	2830	hgsc.bcm.edu	36	6	110408013	110408013	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_005284	exon1	c.G1005A	p.E335E	.	.	.
REV3L	5980	hgsc.bcm.edu	36	6	111739015	111739015	+	Silent	SNP	T	T	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_002912	exon29	c.A8745T	p.G2915G	.	.	.
HECA	51696	hgsc.bcm.edu	36	6	139529830	139529830	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_016217	exon2	c.G988T	p.A330S	.	.	.
NMBR	4829	hgsc.bcm.edu	36	6	142451302	142451302	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_002511	exon1	c.A187C	p.M63L	.	.	.
FBXO30	84085	hgsc.bcm.edu	36	6	146167275	146167275	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_032145	exon2	c.C1960T	p.R654C	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152717495	152717495	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_182961	exon67	c.C10918T	p.Q3640X	.	.	.
JARID2	3720	hgsc.bcm.edu	36	6	15609429	15609429	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_004973	exon8	c.G2258C	p.R753P	.	.	.
JARID2	3720	hgsc.bcm.edu	36	6	15609431	15609431	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_004973	exon8	c.T2260C	p.F754L	.	.	.
ZDHHC14	79683	hgsc.bcm.edu	36	6	157986838	157986838	+	Silent	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_153746	exon6	c.C834G	p.S278S	.	.	.
PARK2	5071	hgsc.bcm.edu	36	6	162784366	162784366	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_013987	exon2	c.C137A	p.A46E	.	.	.
RNF144B	255488	hgsc.bcm.edu	36	6	18507761	18507761	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_182757	exon2	c.G17T	p.R6M	.	.	.
HIST1H2BF	8343	hgsc.bcm.edu	36	6	26307809	26307809	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003522	exon1	c.C44G	p.S15C	.	.	.
HLA-DPB1	3115	hgsc.bcm.edu	36	6	33160746	33160746	+	Silent	SNP	T	T	C	rs1042187	byCluster;byFrequency	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002121	exon3	c.C406C	p.L136L	.	.	.
DEF6	50619	hgsc.bcm.edu	36	6	35395630	35395630	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_022047	exon9	c.A1439G	p.Q480R	.	.	.
PTK7	5754	hgsc.bcm.edu	36	6	43234652	43234652	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002821	exon18	c.T2841C	p.S947S	.	.	.
ICK	22858	hgsc.bcm.edu	36	6	52984577	52984577	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014920	exon11	c.C1441A	p.L481M	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	70127914	70127914	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001704	exon29	c.A4028G	p.Y1343C	BAI3,lung,NS,Substitution - Missense,+1	.	.
CD109	135228	hgsc.bcm.edu	36	6	74553832	74553832	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001159588	exon20	c.C2261A	p.P754H	.	.	.
SYTL3	94120	hgsc.bcm.edu	36	6	159004369	159004370	+	Frame_Shift_Del	DEL	GG	GG	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001009991	exon5	c.81_82del	p.27_28del	.	.	.
PANX3	116337	hgsc.bcm.edu	36	11	123986825	123986825	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_052959	exon1	c.G163A	p.A55T	.	.	.
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	T	G	T	Unknown	Valid	Germline	Phase_I	Capture	454	.	.	SOLID	NM_001001480	exon1	c.G50T	p.R17L	KRTAP5-5,lung,NS,Substitution - Missense,+1	.	.
CARS	833	hgsc.bcm.edu	36	11	2998047	2998047	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_139273	exon10	c.C996T	p.S332S	.	.	.
MAPK8IP1	9479	hgsc.bcm.edu	36	11	45883803	45883803	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_005456	exon12	c.G2091A	p.Q697Q	.	.	.
GYLTL1B	120071	hgsc.bcm.edu	36	11	45902692	45902692	+	Silent	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_152312	exon5	c.G552C	p.L184L	.	.	.
SLC39A13	91252	hgsc.bcm.edu	36	11	47393431	47393431	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152264	exon10	c.C1036G	p.L346V	.	.	.
MS4A10	341116	hgsc.bcm.edu	36	11	60316334	60316334	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_206893	exon4	c.G324A	p.L108L	.	.	.
AHNAK	79026	hgsc.bcm.edu	36	11	62045250	62045250	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001620	exon5	c.C13215T	p.V4405V	.	.	.
AHNAK	79026	hgsc.bcm.edu	36	11	62055312	62055312	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001620	exon5	c.A3153G	p.K1051K	.	.	.
ILK	3611	hgsc.bcm.edu	36	11	6586005	6586005	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001014795	exon2	c.T243C	p.D81D	.	.	.
MYH3	4621	hgsc.bcm.edu	36	17	10482389	10482389	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_002470	exon26	c.G3425T	p.R1142L	.	.	.
PHF12	57649	hgsc.bcm.edu	36	17	24265131	24265131	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001033561	exon8	c.A1185G	p.A395A	.	.	.
ACACA	31	hgsc.bcm.edu	36	17	32528938	32528938	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_198834	exon53	c.C6660T	p.A2220A	.	.	.
ERBB2	2064	hgsc.bcm.edu	36	17	35120197	35120197	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001005862	exon10	c.G748A	p.E250K	.	.	.
GAST	2520	hgsc.bcm.edu	36	17	37125608	37125608	+	Silent	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_000805	exon3	c.A264G	p.G88G	.	.	.
JUP	3728	hgsc.bcm.edu	36	17	37181585	37181585	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_002230	exon2	c.G48A	p.W16X	.	.	.
PPY	5539	hgsc.bcm.edu	36	17	39374384	39374384	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_002722	exon2	c.A165G	p.R55R	.	.	.
TEX2	55852	hgsc.bcm.edu	36	17	59619367	59619367	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_018469	exon5	c.C2338A	p.L780I	.	.	.
ACOX1	51	hgsc.bcm.edu	36	17	71461224	71461224	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_007292	exon7	c.T847A	p.S283T	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517807	7517807	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001126117	exon4	c.G460A	p.E154K	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
EIF4A3	9775	hgsc.bcm.edu	36	17	75727423	75727423	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014740	exon7	c.G720A	p.L240L	.	.	.
RNF213	57674	hgsc.bcm.edu	36	17	75933731	75933731	+	Missense_Mutation	SNP	G	G	A	rs9674961	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020914	exon30	c.G7148A	p.S2383N	.	.	.
MED24	9862	hgsc.bcm.edu	36	17	35442860	35442861	+	Frame_Shift_Del	DEL	TG	TG	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001079518	exon7	c.757_758del	p.253_253del	.	.	.
KRTAP19-2	337969	hgsc.bcm.edu	36	21	30781482	30781482	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_181608	exon1	c.C57A	p.C19X	.	.	.
PKNOX1	5316	hgsc.bcm.edu	36	21	43300784	43300784	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_004571	exon3	c.C166A	p.Q56K	.	.	.
EMP2	2013	hgsc.bcm.edu	36	16	10534321	10534321	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001424	exon5	c.C446G	p.A149G	.	.	.
CIITA	4261	hgsc.bcm.edu	36	16	10924660	10924660	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_000246	exon19	c.G3392C	p.X1131S	.	.	.
C16orf93	90835	hgsc.bcm.edu	36	16	30678491	30678491	+	Silent	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001014979	exon5	c.T525C	p.F175F	.	.	.
NAE1	8883	hgsc.bcm.edu	36	16	65412929	65412929	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_003905	exon7	c.T436C	p.S146P	.	.	.
FAM65A	79567	hgsc.bcm.edu	36	16	66136379	66136379	+	Silent	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001193524	exon17	c.T2931G	p.S977S	.	.	.
GFOD2	81577	hgsc.bcm.edu	36	16	66267087	66267087	+	Silent	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_030819	exon3	c.C630G	p.A210A	.	.	.
BCMO1	53630	hgsc.bcm.edu	36	16	79850890	79850890	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_017429	exon3	c.C302A	p.P101H	.	.	.
GAN	8139	hgsc.bcm.edu	36	16	79945662	79945662	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_022041	exon3	c.G434A	p.C145Y	.	.	.
FOXF1	2294	hgsc.bcm.edu	36	16	85104037	85104037	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001451	exon2	c.C985A	p.P329T	.	.	.
FANCA	2175	hgsc.bcm.edu	36	16	88378805	88378805	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000135	exon15	c.C1428G	p.F476L	.	.	.
SLC12A3	6559	hgsc.bcm.edu	36	16	55464071	55464072	+	Frame_Shift_Del	DEL	GA	GA	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000339	exon8	c.967_968del	p.323_323del	.	.	.
FAM59A	64762	hgsc.bcm.edu	36	18	28121423	28121423	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_022751	exon4	c.C1135G	p.L379V	.	.	.
EPB41L3	23136	hgsc.bcm.edu	36	18	5400583	5400583	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_012307	exon14	c.G2103A	p.G701G	.	.	.
EPB41L3	23136	hgsc.bcm.edu	36	18	5424072	5424072	+	Silent	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_012307	exon7	c.G654T	p.L218L	.	.	.
SLC35A5	55032	hgsc.bcm.edu	36	3	113765056	113765056	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_017945	exon2	c.A116G	p.Y39C	.	.	.
ZNF80	7634	hgsc.bcm.edu	36	3	115437952	115437952	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_007136	exon1	c.A660G	p.K220K	.	.	.
ZNF80	7634	hgsc.bcm.edu	36	3	115438462	115438462	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_007136	exon1	c.A150G	p.K50K	.	.	.
ZNF80	7634	hgsc.bcm.edu	36	3	115438464	115438464	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_007136	exon1	c.A148G	p.K50E	.	.	.
PPP2R3A	5523	hgsc.bcm.edu	36	3	137289421	137289421	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001190447	exon8	c.C587T	p.S196L	.	.	.
ATR	545	hgsc.bcm.edu	36	3	143694679	143694679	+	Silent	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001184	exon35	c.T6063C	p.I2021I	.	.	.
SLITRK3	22865	hgsc.bcm.edu	36	3	166391216	166391216	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014926	exon2	c.C97G	p.L33V	.	.	.
ECE2	9718	hgsc.bcm.edu	36	3	185485530	185485530	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014693	exon9	c.T1445C	p.V482A	.	.	.
CRBN	51185	hgsc.bcm.edu	36	3	3190771	3190771	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001173482	exon3	c.G346A	p.D116N	.	.	.
CRBN	51185	hgsc.bcm.edu	36	3	3190853	3190853	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001173482	exon3	c.G264A	p.M88I	.	.	.
FYCO1	79443	hgsc.bcm.edu	36	3	45983724	45983724	+	Silent	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_024513	exon8	c.A2106C	p.L702L	.	.	.
MAP4	4134	hgsc.bcm.edu	36	3	47932782	47932782	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001134364	exon7	c.A1539G	p.E513E	.	.	.
CHDH	55349	hgsc.bcm.edu	36	3	53830740	53830740	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_018397	exon5	c.G959T	p.G320V	.	.	.
EPHA3	2042	hgsc.bcm.edu	36	3	89473812	89473812	+	Silent	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_182644	exon5	c.G1188T	p.V396V	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102613693	102613693	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_017564	exon33	c.T3523A	p.F1175I	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102613695	102613695	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_017564	exon33	c.T3525C	p.F1175F	.	.	.
FICD	11153	hgsc.bcm.edu	36	12	107437225	107437225	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_007076	exon3	c.A1220T	p.N407I	.	.	.
FICD	11153	hgsc.bcm.edu	36	12	107437233	107437233	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_007076	exon3	c.G1228A	p.D410N	.	.	.
ANAPC7	51434	hgsc.bcm.edu	36	12	109296335	109296335	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_016238	exon11	c.G1797A	p.Q599Q	.	.	.
RPH3A	22895	hgsc.bcm.edu	36	12	111805586	111805586	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014954	exon15	c.C1420A	p.L474I	.	.	.
PSMD9	5715	hgsc.bcm.edu	36	12	120821980	120821980	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_002813	exon3	c.T299A	p.L100Q	.	.	.
DHX37	57647	hgsc.bcm.edu	36	12	124007608	124007608	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_032656	exon17	c.C2184T	p.P728P	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128129215	128129215	+	Silent	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_133448	exon8	c.T1932C	p.S644S	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_033360	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
LRRK2	120892	hgsc.bcm.edu	36	12	39000140	39000140	+	Silent	SNP	A	A	G	rs11176013	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_198578	exon34	c.A4911G	p.K1637K	.	.	.
WNT10B	7480	hgsc.bcm.edu	36	12	47648096	47648096	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003394	exon4	c.A611G	p.D204G	.	.	.
WNT10B	7480	hgsc.bcm.edu	36	12	47648291	47648291	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003394	exon4	c.G416A	p.G139D	.	.	.
SMARCC2	6601	hgsc.bcm.edu	36	12	54845659	54845659	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003075	exon26	c.A2849C	p.H950P	.	.	.
SMARCC2	6601	hgsc.bcm.edu	36	12	54861865	54861865	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003075	exon9	c.G730A	p.D244N	.	.	.
SMARCC2	6601	hgsc.bcm.edu	36	12	54861872	54861872	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003075	exon9	c.G723A	p.W241X	.	.	.
DEPDC4	120863	hgsc.bcm.edu	36	12	99173965	99173965	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152317	exon4	c.C871T	p.L291L	.	.	.
DEPDC4	120863	hgsc.bcm.edu	36	12	99174008	99174008	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_152317	exon4	c.C828T	p.I276I	.	.	.
DEPDC4	120863	hgsc.bcm.edu	36	12	99174037	99174037	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152317	exon4	c.C799T	p.Q267X	.	.	.
DEPDC4	120863	hgsc.bcm.edu	36	12	99174058	99174058	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152317	exon4	c.C778T	p.P260S	.	.	.
DEPDC4	120863	hgsc.bcm.edu	36	12	99174091	99174091	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152317	exon4	c.C745T	p.H249Y	.	.	.
DEPDC4	120863	hgsc.bcm.edu	36	12	99174106	99174106	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152317	exon4	c.C730T	p.L244F	.	.	.
OCA2	4948	hgsc.bcm.edu	36	15	25870544	25870544	+	Silent	SNP	A	A	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_000275	exon18	c.T1932G	p.P644P	.	.	.
MTMR15	22909	hgsc.bcm.edu	36	15	29008048	29008048	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_014967	exon11	c.G2489T	p.G830V	.	.	.
ATP8B4	79895	hgsc.bcm.edu	36	15	48052253	48052253	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_024837	exon13	c.G1061A	p.S354N	.	.	.
CYP19A1	1588	hgsc.bcm.edu	36	15	49298123	49298123	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_031226	exon7	c.T650C	p.I217T	.	.	.
AQP9	366	hgsc.bcm.edu	36	15	56254461	56254461	+	Silent	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_020980	exon4	c.A429G	p.A143A	.	.	.
CILP	8483	hgsc.bcm.edu	36	15	63283681	63283681	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_003613	exon6	c.C897T	p.I299I	.	.	.
CILP	8483	hgsc.bcm.edu	36	15	63283717	63283717	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_003613	exon6	c.C861T	p.L287L	.	.	.
CILP	8483	hgsc.bcm.edu	36	15	63283747	63283747	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_003613	exon6	c.C831T	p.I277I	.	.	.
CILP	8483	hgsc.bcm.edu	36	15	63283756	63283756	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_003613	exon6	c.C822T	p.I274I	.	.	.
CILP	8483	hgsc.bcm.edu	36	15	63283906	63283906	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_003613	exon6	c.C672T	p.F224F	.	.	.
DPP8	54878	hgsc.bcm.edu	36	15	63560980	63560980	+	Silent	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_197960	exon10	c.A1092C	p.L364L	.	.	.
KIAA1199	57214	hgsc.bcm.edu	36	15	79016086	79016086	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_018689	exon23	c.A3026G	p.Y1009C	.	.	.
POLG	5428	hgsc.bcm.edu	36	15	87667645	87667645	+	Silent	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001126131	exon13	c.T2259A	p.P753P	.	.	.
MCTP2	55784	hgsc.bcm.edu	36	15	92711968	92711968	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001159643	exon10	c.C1432G	p.L478V	.	.	.
DRP2	1821	hgsc.bcm.edu	36	X	100396123	100396123	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001939	exon18	c.C2031T	p.F677F	.	.	.
ATG4A	115201	hgsc.bcm.edu	36	X	107267697	107267697	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_052936	exon8	c.G555A	p.M185I	.	.	.
ZCCHC12	170261	hgsc.bcm.edu	36	X	117843325	117843325	+	Silent	SNP	G	A	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_173798	exon4	c.G90A	p.G30G	.	.	.
UPF3B	65109	hgsc.bcm.edu	36	X	118856472	118856472	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_080632	exon9	c.G893A	p.R298K	.	.	.
USP26	83844	hgsc.bcm.edu	36	X	131989775	131989775	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_031907	exon1	c.A140G	p.Y47C	.	.	.
MAGEB2	4113	hgsc.bcm.edu	36	X	30147052	30147052	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_002364	exon2	c.T434G	p.F145C	.	.	.
FOXR2	139628	hgsc.bcm.edu	36	X	55667170	55667170	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_198451	exon1	c.A301G	p.K101E	.	.	.
ZCCHC5	203430	hgsc.bcm.edu	36	X	77799564	77799564	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_152694	exon2	c.G1010T	p.G337V	.	.	.
SATL1	340562	hgsc.bcm.edu	36	X	84249182	84249182	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001012980	exon1	c.A1449C	p.E483D	.	.	.
KAL1	3730	hgsc.bcm.edu	36	X	8513403	8513403	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_000216	exon6	c.G761A	p.R254K	.	.	.
LAS1L	81887	hgsc.bcm.edu	36	X	64671241	64671242	+	Frame_Shift_Del	DEL	CA	CA	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001170650	exon1	c.79_80del	p.27_27del	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155470151	155470151	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_017639	exon11	c.C2527T	p.L843F	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155473554	155473554	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_017639	exon9	c.C1759T	p.H587Y	.	.	.
HAND2	9464	hgsc.bcm.edu	36	4	174686609	174686609	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_021973	exon1	c.C407T	p.S136F	.	.	.
HAND2	9464	hgsc.bcm.edu	36	4	174686611	174686611	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_021973	exon1	c.C405T	p.L135L	.	.	.
HAND2	9464	hgsc.bcm.edu	36	4	174686671	174686671	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_021973	exon1	c.C345T	p.I115I	.	.	.
KLB	152831	hgsc.bcm.edu	36	4	39126483	39126483	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_175737	exon5	c.A2917G	p.S973G	.	.	.
SCFD2	152579	hgsc.bcm.edu	36	4	53926052	53926052	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152540	exon1	c.G814A	p.V272M	.	.	.
KIT	3815	hgsc.bcm.edu	36	4	55294073	55294073	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001093772	exon17	c.C2430T	p.A810A	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114497559	114497560	+	Frame_Shift_Del	DEL	CC	CC	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001148	exon38	c.8336_8337del	p.2779_2779del	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155473354	155473355	+	Frame_Shift_Del	DEL	GG	GG	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_017639	exon9	c.1958_1959del	p.653_653del	.	.	.
KLF11	8462	hgsc.bcm.edu	36	2	10103992	10103992	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001177716	exon2	c.A256C	p.T86P	.	.	.
KLF11	8462	hgsc.bcm.edu	36	2	10103996	10103996	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_001177716	exon2	c.T260A	p.L87Q	.	.	.
IL1R2	7850	hgsc.bcm.edu	36	2	102009048	102009048	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_004633	exon8	c.A931T	p.I311F	.	.	.
STAM2	10254	hgsc.bcm.edu	36	2	152698236	152698236	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_005843	exon9	c.G808A	p.D270N	.	.	.
GPD2	2820	hgsc.bcm.edu	36	2	157075590	157075590	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001083112	exon4	c.C311T	p.S104L	.	.	.
DPP4	1803	hgsc.bcm.edu	36	2	162581551	162581551	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001935	exon18	c.C1540T	p.L514L	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179375218	179375218	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_133432	exon3	c.G187A	p.A63T	.	.	.
ABCG5	64240	hgsc.bcm.edu	36	2	43904557	43904557	+	Silent	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_022436	exon9	c.G1323T	p.L441L	.	.	.
TTC7A	57217	hgsc.bcm.edu	36	2	47130669	47130669	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_020458	exon17	c.A1997G	p.D666G	.	.	.
NFU1	27247	hgsc.bcm.edu	36	2	69512541	69512541	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001002755	exon2	c.C163T	p.P55S	.	.	.
C2orf42	54980	hgsc.bcm.edu	36	2	70250275	70250275	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_017880	exon6	c.G1062C	p.E354D	.	.	.
RAB11FIP5	26056	hgsc.bcm.edu	36	2	73169937	73169937	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_015470	exon2	c.A446G	p.H149R	.	.	.
PLGLB1	5343	hgsc.bcm.edu	36	2	87098210	87098210	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001032392	exon2	c.A162G	p.E54E	.	.	.
CNGA3	1261	hgsc.bcm.edu	36	2	98379145	98379145	+	Silent	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001079878	exon7	c.C1026A	p.T342T	.	.	.
TNS1	7145	hgsc.bcm.edu	36	2	218387917	218387919	+	In_Frame_Del	DEL	AGA	AGA	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	AGA	AGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_022648	exon25	c.4378_4380del	p.1460_1460del	.	.	.
C9orf43	257169	hgsc.bcm.edu	36	9	115215868	115215868	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_152786	exon3	c.C160T	p.P54S	.	.	.
ZBTB26	57684	hgsc.bcm.edu	36	9	124721683	124721683	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_020924	exon2	c.C352T	p.R118W	.	.	.
ST6GALNAC4	27090	hgsc.bcm.edu	36	9	129714512	129714512	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_175039	exon4	c.A467C	p.H156P	.	.	.
C9orf114	51490	hgsc.bcm.edu	36	9	130629173	130629173	+	Silent	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_016390	exon4	c.G327T	p.V109V	.	.	.
QSOX2	169714	hgsc.bcm.edu	36	9	138253580	138253580	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_181701	exon6	c.G704C	p.S235T	.	.	.
BNC2	54796	hgsc.bcm.edu	36	9	16409387	16409387	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_017637	exon7	c.G2900C	p.S967T	.	.	.
RRAGA	10670	hgsc.bcm.edu	36	9	19040161	19040161	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_006570	exon1	c.G504A	p.T168T	.	.	.
SMARCA2	6595	hgsc.bcm.edu	36	9	2019064	2019064	+	Silent	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003070	exon2	c.G42T	p.G14G	.	.	.
TLN1	7094	hgsc.bcm.edu	36	9	35688637	35688637	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_006289	exon54	c.T7165G	p.W2389G	.	.	.
RECK	8434	hgsc.bcm.edu	36	9	36098015	36098015	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_021111	exon14	c.G1619A	p.G540E	.	.	.
ALDH1B1	219	hgsc.bcm.edu	36	9	38387059	38387059	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_000692	exon2	c.C1314G	p.N438K	.	.	.
TMEM2	23670	hgsc.bcm.edu	36	9	73514050	73514050	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_001135820	exon16	c.G2741C	p.S914T	.	.	.
CUL4A	8451	hgsc.bcm.edu	36	13	112947296	112947296	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001008895	exon13	c.G1366A	p.D456N	.	.	.
CENPJ	55835	hgsc.bcm.edu	36	13	24378370	24378370	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_018451	exon7	c.A1806G	p.E602E	.	.	.
DGKH	160851	hgsc.bcm.edu	36	13	41693469	41693469	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_178009	exon29	c.T3512C	p.I1171T	.	.	.
ENOX1	55068	hgsc.bcm.edu	36	13	42828100	42828100	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001127615	exon8	c.C778G	p.H260D	.	.	.
NUFIP1	26747	hgsc.bcm.edu	36	13	44431703	44431703	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_012345	exon7	c.G834A	p.M278I	.	.	.
RB1	5925	hgsc.bcm.edu	36	13	47851742	47851742	+	Silent	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_000321	exon14	c.T1344G	p.L448L	.	.	.
PCDH20	64881	hgsc.bcm.edu	36	13	60883848	60883848	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_022843	exon2	c.C2385T	p.F795F	.	.	.
KLF5	688	hgsc.bcm.edu	36	13	72534060	72534060	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001730	exon2	c.G322A	p.E108K	.	.	.
SLITRK1	114798	hgsc.bcm.edu	36	13	83352912	83352913	+	Frame_Shift_Del	DEL	GG	GG	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_052910	exon1	c.731_732del	p.244_244del	.	.	.
AKR1CL2	83592	hgsc.bcm.edu	36	10	4869741	4869741	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001040177	exon5	c.C550T	p.P184S	.	.	.
FRMPD2	143162	hgsc.bcm.edu	36	10	49122835	49122835	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001018071	exon4	c.C373T	p.Q125X	.	.	.
NDST2	8509	hgsc.bcm.edu	36	10	75237176	75237176	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_003635	exon3	c.G977C	p.G326A	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7658870	7658870	+	Silent	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_032817	exon6	c.G888A	p.S296S	.	.	.
SAMD8	142891	hgsc.bcm.edu	36	10	76606007	76606007	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_144660	exon5	c.C970A	p.R324S	.	.	.
KIF20B	9585	hgsc.bcm.edu	36	10	91468554	91468554	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_016195	exon12	c.A1379G	p.Y460C	.	.	.
CYP26A1	1592	hgsc.bcm.edu	36	10	94825607	94825607	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_057157	exon5	c.G692A	p.G231E	.	.	.
WAPAL	23063	hgsc.bcm.edu	36	10	88203423	88203429	+	Frame_Shift_Del	DEL	CGATGAT	CGATGAT	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	CGATGAT	CGATGAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_015045	exon13	c.2797_2803del	p.933_935del	.	.	.
CCDC112	153733	hgsc.bcm.edu	36	5	114639188	114639188	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001040440	exon6	c.T542A	p.I181N	.	.	.
PCDHGC3	5098	hgsc.bcm.edu	36	5	140835997	140835997	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_032402	exon1	c.G130C	p.G44R	.	.	.
TCERG1	10915	hgsc.bcm.edu	36	5	145818714	145818714	+	Silent	SNP	A	A	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_006706	exon4	c.A513T	p.S171S	.	.	.
C5orf54	63920	hgsc.bcm.edu	36	5	159754638	159754638	+	Silent	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina	.	.	SOLID	NM_022090	exon2	c.C438T	p.I146I	.	.	.
GABRG2	2566	hgsc.bcm.edu	36	5	161512752	161512752	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	NM_198903	exon11	c.G1348A	p.E450K	.	.	.
SH3PXD2B	285590	hgsc.bcm.edu	36	5	171699493	171699493	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001017995	exon13	c.C1221A	p.Y407X	.	.	.
OR2Y1	134083	hgsc.bcm.edu	36	5	180099390	180099390	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001001657	exon1	c.T275C	p.I92T	.	.	.
RXFP3	51289	hgsc.bcm.edu	36	5	33972705	33972705	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_016568	exon1	c.G103T	p.A35S	.	.	.
BHMT2	23743	hgsc.bcm.edu	36	5	78401370	78401370	+	Silent	SNP	T	T	C	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001178005	exon1	c.T9C	p.P3P	.	.	.
BHMT2	23743	hgsc.bcm.edu	36	5	78401377	78401377	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	NM_001178005	exon1	c.C16A	p.R6S	.	.	.
CKMT2	1160	hgsc.bcm.edu	36	5	80597749	80597749	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_001099735	exon10	c.T1176G	p.N392K	.	.	.
ARRDC3	57561	hgsc.bcm.edu	36	5	90714463	90714463	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	NM_020801	exon1	c.A203C	p.N68T	.	.	.
C1orf222	339457	hgsc.bcm.edu	36	1	1845116	1845118	+	In_Frame_Del	DEL	GCT	GCT	-	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	GCT	GCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID	.	.	.	.	.	.	.
MAP2K4	6416	hgsc.bcm.edu	36	17	11969335	11969335	+	Splice_Site	SNP	G	G	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	.	.	.	.	.	.	.
NXF5	55998	hgsc.bcm.edu	36	X	100978371	100978371	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454	.	.	SOLID	.	.	.	.	.	.	.
PDCL	5082	hgsc.bcm.edu	36	9	124625298	124625298	+	Splice_Site	SNP	C	C	T	novel	.	TCGA-AG-A00Y-01A-02W-A005-10	TCGA-AG-A00Y-10A-01W-A005-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454	.	.	SOLID	.	.	.	.	.	.	.