Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
KIAA2026	158358	broad.mit.edu	36	9	5997467	5997468	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017969	exon1	c.321_322insG	p.G107fs	.	.	.
CMTM5	116173	broad.mit.edu	36	14	22917808	22917809	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
RWDD2B	10069	broad.mit.edu	36	21	29300062	29300063	+	Splice_Site	INS	-	C	C	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
CMTM1	113540	broad.mit.edu	36	16	65158558	65158559	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
PTN	5764	broad.mit.edu	36	7	136586609	136586609	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_002825	exon4	c.G359T	p.G120V	.	.	.
ASL	435	broad.mit.edu	36	7	65195067	65195068	+	Missense_Mutation	DNP	AG	CA	CA	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024944	exon14	c.1172_1173CA	.	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91556697	91556697	+	Silent	SNP	T	G	G	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon38	c.T9252G	p.S3084S	.	.	.
DTD1	92675	broad.mit.edu	36	20	18524871	18524871	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_080820	exon3	c.C356T	p.P119L	.	.	.
DNTTIP1	116092	broad.mit.edu	36	20	43857456	43857456	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052951	exon4	c.G339A	p.L113L	.	.	.
GALNTL1	57452	broad.mit.edu	36	14	68884425	68884425	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020692	exon14	c.G1492A	p.G498R	.	.	.
DPF3	8110	broad.mit.edu	36	14	72207706	72207706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012074	exon9	c.C965T	p.T322M	.	.	.
PNMAL2	57469	broad.mit.edu	36	19	51689428	51689428	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_020709	exon1	c.A1135C	p.M379L	.	.	.
PREX2	80243	broad.mit.edu	36	8	69171852	69171852	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025170	exon22	c.G2415A	p.K805K	.	.	.
TCHH	7062	broad.mit.edu	36	1	150351287	150351287	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007113	exon2	c.G1030C	p.E344Q	.	.	.
CD1C	911	broad.mit.edu	36	1	156528686	156528686	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001765	exon3	c.G517A	p.V173I	.	.	.
OR2T4	127074	broad.mit.edu	36	1	246592349	246592349	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004696	exon1	c.C844A	p.L282I	.	.	.
LEPROT	54741	broad.mit.edu	36	1	65668308	65668308	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198681	exon4	c.C295T	p.R99C	.	.	.
KBTBD4	55709	broad.mit.edu	36	11	47555709	47555709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016506	exon2	c.G419A	p.R140H	.	.	.
PRPF19	27339	broad.mit.edu	36	11	60426801	60426801	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014502	exon4	c.T375C	p.T125T	.	.	.
SLC22A8	9376	broad.mit.edu	36	11	62538986	62538986	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184732	exon2	c.G21A	p.L7L	.	.	.
GRM5	2915	broad.mit.edu	36	11	87977536	87977536	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000842	exon5	c.A1392G	p.G464G	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24545367	24545367	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001503	exon21	c.G2150A	p.R717Q	.	.	.
TULP1	7287	broad.mit.edu	36	6	35581883	35581883	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003322	exon10	c.C874A	p.R292R	.	.	.
OR1A1	8383	broad.mit.edu	36	17	3066541	3066541	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014565	exon1	c.C877T	p.R293W	.	.	.
SRP68	6730	broad.mit.edu	36	17	71580067	71580067	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014230	exon1	c.G101A	p.G34E	.	.	.
USP36	57602	broad.mit.edu	36	17	74314669	74314669	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025090	exon14	c.A2052G	p.P684P	.	.	.
RNF40	9810	broad.mit.edu	36	16	30687787	30687787	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014771	exon15	c.G2225A	p.R742H	.	.	.
SALL3	27164	broad.mit.edu	36	18	74858261	74858261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_171999	exon3	c.G3854A	p.R1285H	.	.	.
DZIP1L	199221	broad.mit.edu	36	3	139269138	139269138	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173543	exon14	c.C1927T	p.R643W	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122985214	122985214	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_207437	exon77	c.A13217C	p.D4406A	.	.	.
FAM113B	91523	broad.mit.edu	36	12	45915445	45915445	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138371	exon2	c.C332G	p.S111W	.	.	.
PA2G4	5036	broad.mit.edu	36	12	54791329	54791329	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006191	exon11	c.C1034T	p.S345F	.	.	.
CSRP2	1466	broad.mit.edu	36	12	75781118	75781118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001321	exon3	c.C250T	p.R84C	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80217222	80217222	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003625	exon23	c.G2713A	p.A905T	.	.	.
THBS1	7057	broad.mit.edu	36	15	37673656	37673656	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003246	exon20	c.G3332A	p.R1111H	.	.	.
CYP11A1	1583	broad.mit.edu	36	15	72418694	72418694	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000781	exon7	c.C1173T	p.S391S	.	.	.
ACAN	176	broad.mit.edu	36	15	87183197	87183197	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001135	exon3	c.C370T	p.R124C	.	.	.
MTTP	4547	broad.mit.edu	36	4	100734951	100734951	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_000253	exon8	c.G797A	p.R266K	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149400709	149400709	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001166104	exon3	c.C1768T	p.R590X	.	.	.
RUFY3	22902	broad.mit.edu	36	4	71853124	71853124	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014961	exon5	c.T578G	p.F193C	.	.	.
ELF4	2000	broad.mit.edu	36	X	129028557	129028557	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001421	exon9	c.C1812T	p.R604R	.	.	.
DMD	1756	broad.mit.edu	36	X	31896419	31896419	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004011	exon17	c.G2549A	p.R850Q	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328686	63328686	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01			T	-	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152424	exon2	c.1206delA	p.E402fs	.	.	.
BIN1	274	broad.mit.edu	36	2	127522609	127522609	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139348	exon15	c.G1412T	p.G471V	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137589252	137589252	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080427	exon4	c.G1195A	p.V399M	.	.	.
LRP2	4036	broad.mit.edu	36	2	169730783	169730783	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004525	exon62	c.G11663A	p.R3888H	.	.	.
ITGAV	3685	broad.mit.edu	36	2	187248653	187248653	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001144999	exon27	c.C2646A	p.Y882X	.	.	.
GPR113	165082	broad.mit.edu	36	2	26387859	26387860	+	Missense_Mutation	DNP	GC	AT	AT	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145169	exon10	c.2033_2034AT	.	.	.	.
SOCS5	9655	broad.mit.edu	36	2	46840564	46840564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144949	exon2	c.C1391T	p.S464L	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108734598	108734598	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021224	exon5	c.C6063T	p.R2021R	.	.	.
LRRC8A	56262	broad.mit.edu	36	9	130710839	130710839	+	Silent	SNP	C	G	G	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019594	exon3	c.C1575G	p.G525G	.	.	.
NALCN	259232	broad.mit.edu	36	13	100827175	100827175	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052867	exon6	c.C521T	p.S174L	.	.	.
FLT1	2321	broad.mit.edu	36	13	27801789	27801789	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002019	exon19	c.C2670T	p.N890N	.	.	.
INTS6	26512	broad.mit.edu	36	13	50859665	50859665	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012141	exon7	c.A752T	p.D251V	.	.	.
NT5C2	22978	broad.mit.edu	36	10	104840691	104840691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012229	exon17	c.C1264T	p.R422C	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50348596	50348596	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000124	exon18	c.C3416T	p.S1139F	.	.	.
TET1	80312	broad.mit.edu	36	10	70121237	70121237	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030625	exon12	c.G6071A	p.R2024Q	.	.	.
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon5	c.C667T	p.R223X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.
NRG2	9542	broad.mit.edu	36	5	139247244	139247244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013981	exon2	c.C737T	p.T246M	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161258	140161258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031497	exon1	c.C292T	p.R98W	.	.	.
PCDHB16	57717	broad.mit.edu	36	5	140544037	140544037	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02G-01	TCGA-AG-A02G-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020957	exon1	c.T1719C	p.T573T	.	.	.