Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
MAD1L1	8379	hgsc.bcm.edu	36	7	1822241	1822241	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GLI3	2737	hgsc.bcm.edu	36	7	41971285	41971285	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
EGFR	1956	hgsc.bcm.edu	36	7	55227016	55227016	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
BAZ1B	9031	hgsc.bcm.edu	36	7	72522648	72522648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AKAP9	10142	hgsc.bcm.edu	36	7	91564099	91564099	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PON3	5446	hgsc.bcm.edu	36	7	94831192	94831192	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DYNC1I1	1780	hgsc.bcm.edu	36	7	95502982	95502982	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PPP1R3A	5506	hgsc.bcm.edu	36	7	113305539	113305539	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PSMF1	9491	hgsc.bcm.edu	36	20	1063856	1063856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SEL1L2	80343	hgsc.bcm.edu	36	20	13815033	13815033	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CTNNBL1	56259	hgsc.bcm.edu	36	20	35904175	35904175	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ZNF217	7764	hgsc.bcm.edu	36	20	51626114	51626114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PSMA3	5684	hgsc.bcm.edu	36	14	57788607	57788607	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KCNH5	27133	hgsc.bcm.edu	36	14	62244289	62244289	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ESRRB	2103	hgsc.bcm.edu	36	14	75975582	75975582	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TMEM63C	57156	hgsc.bcm.edu	36	14	76784467	76784467	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
STK11	6794	hgsc.bcm.edu	36	19	1174020	1174020	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KLHL26	55295	hgsc.bcm.edu	36	19	18640181	18640181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CCDC123	84902	hgsc.bcm.edu	36	19	38142647	38142647	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RYR1	6261	hgsc.bcm.edu	36	19	43660301	43660301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GSK3A	2931	hgsc.bcm.edu	36	19	47426843	47426843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LIPE	3991	hgsc.bcm.edu	36	19	47622704	47622704	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PLA2G4C	8605	hgsc.bcm.edu	36	19	53250117	53250117	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KLK10	5655	hgsc.bcm.edu	36	19	56209896	56209896	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
IGLON5	402665	hgsc.bcm.edu	36	19	56518845	56518845	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NLRP12	91662	hgsc.bcm.edu	36	19	59006345	59006345	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NLRP13	126204	hgsc.bcm.edu	36	19	61135330	61135330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NLRP8	126205	hgsc.bcm.edu	36	19	61158005	61158005	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AURKC	6795	hgsc.bcm.edu	36	19	62436646	62436646	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NPBWR1	2831	hgsc.bcm.edu	36	8	54015165	54015165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRDM14	63978	hgsc.bcm.edu	36	8	71126932	71126932	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRDM14	63978	hgsc.bcm.edu	36	8	71141225	71141225	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RUNX1T1	862	hgsc.bcm.edu	36	8	93067627	93067627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TMEM67	91147	hgsc.bcm.edu	36	8	94878859	94878859	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CSMD3	114788	hgsc.bcm.edu	36	8	113310203	113310203	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CSMD3	114788	hgsc.bcm.edu	36	8	113345127	113345127	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CSMD3	114788	hgsc.bcm.edu	36	8	113461831	113461831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ADCY8	114	hgsc.bcm.edu	36	8	132120996	132120996	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ARID1A	8289	hgsc.bcm.edu	36	1	26978138	26978138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RBBP4	5928	hgsc.bcm.edu	36	1	32895695	32895695	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MPL	4352	hgsc.bcm.edu	36	1	43577749	43577749	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C1orf168	199920	hgsc.bcm.edu	36	1	56961913	56961913	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ST6GALNAC3	256435	hgsc.bcm.edu	36	1	76650418	76650418	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CHIA	27159	hgsc.bcm.edu	36	1	111662779	111662779	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KCND3	3752	hgsc.bcm.edu	36	1	112131150	112131150	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LCE1D	353134	hgsc.bcm.edu	36	1	151037200	151037200	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PKLR	5313	hgsc.bcm.edu	36	1	153530997	153530997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ASH1L	55870	hgsc.bcm.edu	36	1	153675441	153675441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RGS4	5999	hgsc.bcm.edu	36	1	161310852	161310852	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
XCL2	6846	hgsc.bcm.edu	36	1	166777943	166777943	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRRC2C	0	hgsc.bcm.edu	36	1	169777761	169777761	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ASTN1	460	hgsc.bcm.edu	36	1	175193501	175193501	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
HMCN1	83872	hgsc.bcm.edu	36	1	184373304	184373304	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KDM5B	10765	hgsc.bcm.edu	36	1	200965709	200965709	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RAB7L1	8934	hgsc.bcm.edu	36	1	204007252	204007252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
IL19	29949	hgsc.bcm.edu	36	1	205081011	205081011	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
USH2A	7399	hgsc.bcm.edu	36	1	214658564	214658564	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OBSCN	84033	hgsc.bcm.edu	36	1	226542111	226542111	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GALNT2	2590	hgsc.bcm.edu	36	1	228439053	228439053	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RYR2	6262	hgsc.bcm.edu	36	1	235844639	235844639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PLD5	200150	hgsc.bcm.edu	36	1	240450029	240450029	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OR2W5	441932	hgsc.bcm.edu	36	1	245721461	245721461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OR2M3	127062	hgsc.bcm.edu	36	1	246433389	246433389	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OR2M4	26245	hgsc.bcm.edu	36	1	246469730	246469730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
IGF2	3481	hgsc.bcm.edu	36	11	2111336	2111336	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OR51E2	81285	hgsc.bcm.edu	36	11	4660156	4660156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OVCH2	341277	hgsc.bcm.edu	36	11	7676890	7676890	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
COMMD9	29099	hgsc.bcm.edu	36	11	36252865	36252865	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SLC22A11	55867	hgsc.bcm.edu	36	11	64080373	64080373	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MRGPRD	116512	hgsc.bcm.edu	36	11	68504869	68504869	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C11orf30	56946	hgsc.bcm.edu	36	11	75847022	75847022	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ATM	472	hgsc.bcm.edu	36	11	107741296	107741296	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
EXPH5	23086	hgsc.bcm.edu	36	11	107890584	107890584	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
BCL9L	283149	hgsc.bcm.edu	36	11	118277126	118277126	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OR8A1	390275	hgsc.bcm.edu	36	11	123945634	123945634	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MUC21	394263	hgsc.bcm.edu	36	6	31062900	31062900	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RNF8	9025	hgsc.bcm.edu	36	6	37466507	37466507	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TJAP1	93643	hgsc.bcm.edu	36	6	43574736	43574736	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DST	667	hgsc.bcm.edu	36	6	56591933	56591933	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
EPHA7	2045	hgsc.bcm.edu	36	6	94022437	94022437	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AKD1	221264	hgsc.bcm.edu	36	6	109961219	109961219	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C6orf170	221322	hgsc.bcm.edu	36	6	121680366	121680366	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MAP3K4	4216	hgsc.bcm.edu	36	6	161411647	161411647	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ATP2A3	489	hgsc.bcm.edu	36	17	3791094	3791094	+	Missense_Mutation	SNP	G	G	A	rs9895012	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MYH3	4621	hgsc.bcm.edu	36	17	10483434	10483434	+	Missense_Mutation	SNP	G	G	A	rs34088014	byCluster;byFrequency	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NF1	4763	hgsc.bcm.edu	36	17	26552615	26552615	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ERBB2	2064	hgsc.bcm.edu	36	17	35136380	35136380	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C17orf57	124989	hgsc.bcm.edu	36	17	42793837	42793837	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LRRC59	55379	hgsc.bcm.edu	36	17	45817525	45817525	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MSI2	124540	hgsc.bcm.edu	36	17	52833754	52833754	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MAP3K3	4215	hgsc.bcm.edu	36	17	59124778	59124778	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ABCA6	23460	hgsc.bcm.edu	36	17	64590962	64590962	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ABCA10	10349	hgsc.bcm.edu	36	17	64664597	64664597	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRPSAP1	5635	hgsc.bcm.edu	36	17	71821520	71821520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RNF213	57674	hgsc.bcm.edu	36	17	75905623	75905623	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
APP	351	hgsc.bcm.edu	36	21	26406309	26406309	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SLC5A3	6526	hgsc.bcm.edu	36	21	34390964	34390964	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
COL18A1	80781	hgsc.bcm.edu	36	21	45700207	45700207	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
COL6A2	1292	hgsc.bcm.edu	36	21	46376513	46376513	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TPSD1	23430	hgsc.bcm.edu	36	16	1246356	1246356	+	Missense_Mutation	SNP	T	T	C	rs1800984	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
EME2	197342	hgsc.bcm.edu	36	16	1763755	1763755	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GTF3C1	2975	hgsc.bcm.edu	36	16	27420026	27420026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CYLD	1540	hgsc.bcm.edu	36	16	49369326	49369326	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CHD9	80205	hgsc.bcm.edu	36	16	51829798	51829798	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
WWP2	11060	hgsc.bcm.edu	36	16	68528554	68528554	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CDYL2	124359	hgsc.bcm.edu	36	16	79195863	79195863	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KIAA1609	57707	hgsc.bcm.edu	36	16	83080397	83080397	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MYOM1	8736	hgsc.bcm.edu	36	18	3178882	3178882	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DSC2	1825	hgsc.bcm.edu	36	18	26920671	26920671	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DSG2	1829	hgsc.bcm.edu	36	18	27365209	27365209	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SMAD4	4089	hgsc.bcm.edu	36	18	46857018	46857018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SERPINB8	5271	hgsc.bcm.edu	36	18	59796678	59796678	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
VHL	7428	hgsc.bcm.edu	36	3	10166600	10166600	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RFTN1	23180	hgsc.bcm.edu	36	3	16333610	16333610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ZNF385D	79750	hgsc.bcm.edu	36	3	21437738	21437738	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MLH1	4292	hgsc.bcm.edu	36	3	37067047	37067047	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DLEC1	9940	hgsc.bcm.edu	36	3	38076317	38076317	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CTNNB1	1499	hgsc.bcm.edu	36	3	41241165	41241165	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SETD2	29072	hgsc.bcm.edu	36	3	47136984	47136984	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GRM2	2912	hgsc.bcm.edu	36	3	51724584	51724584	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DUSP7	1849	hgsc.bcm.edu	36	3	52059945	52059945	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PTPRG	5793	hgsc.bcm.edu	36	3	62164618	62164618	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ATP6V1A	523	hgsc.bcm.edu	36	3	114999970	114999970	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GAP43	2596	hgsc.bcm.edu	36	3	116922345	116922345	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CD80	941	hgsc.bcm.edu	36	3	120738700	120738700	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
FBXO40	51725	hgsc.bcm.edu	36	3	122828349	122828349	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
UROC1	131669	hgsc.bcm.edu	36	3	127711179	127711179	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TRPC1	7220	hgsc.bcm.edu	36	3	143938020	143938020	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SKIL	6498	hgsc.bcm.edu	36	3	171592746	171592746	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
FNDC3B	64778	hgsc.bcm.edu	36	3	173547821	173547821	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PIK3CA	5290	hgsc.bcm.edu	36	3	180434770	180434770	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
EHHADH	1962	hgsc.bcm.edu	36	3	186393441	186393441	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TRA2B	6434	hgsc.bcm.edu	36	3	187126093	187126093	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ETV5	2119	hgsc.bcm.edu	36	3	187266435	187266435	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TEAD4	7004	hgsc.bcm.edu	36	12	3017494	3017494	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CD163L1	283316	hgsc.bcm.edu	36	12	7477387	7477387	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C12orf40	283461	hgsc.bcm.edu	36	12	38401072	38401072	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRICKLE1	144165	hgsc.bcm.edu	36	12	41144823	41144823	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MAP3K12	7786	hgsc.bcm.edu	36	12	52162058	52162058	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PTPN11	5781	hgsc.bcm.edu	36	12	111372548	111372548	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PTPN11	5781	hgsc.bcm.edu	36	12	111372580	111372580	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ACADS	35	hgsc.bcm.edu	36	12	119661061	119661061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CAMKK2	10645	hgsc.bcm.edu	36	12	120191742	120191742	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RSRC2	65117	hgsc.bcm.edu	36	12	121572737	121572737	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
HIP1R	9026	hgsc.bcm.edu	36	12	121906806	121906806	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SETD8	387893	hgsc.bcm.edu	36	12	122457993	122457993	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DNAH10	196385	hgsc.bcm.edu	36	12	122918014	122918014	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TMEM132B	114795	hgsc.bcm.edu	36	12	124400394	124400394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
OR4N4	283694	hgsc.bcm.edu	36	15	19884684	19884684	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GABRA5	2558	hgsc.bcm.edu	36	15	24771132	24771132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SEMA6D	80031	hgsc.bcm.edu	36	15	45845475	45845475	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
COPS2	9318	hgsc.bcm.edu	36	15	47213508	47213508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
STRA6	64220	hgsc.bcm.edu	36	15	72281629	72281629	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
STARD5	80765	hgsc.bcm.edu	36	15	79392762	79392762	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
BNC1	646	hgsc.bcm.edu	36	15	81723796	81723796	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PCSK6	5046	hgsc.bcm.edu	36	15	99756231	99756231	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
FRMPD4	9758	hgsc.bcm.edu	36	X	12622477	12622477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
FRMPD4	9758	hgsc.bcm.edu	36	X	12644516	12644516	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TLR8	51311	hgsc.bcm.edu	36	X	12847918	12847918	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CDKL5	6792	hgsc.bcm.edu	36	X	18574048	18574048	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CXorf22	170063	hgsc.bcm.edu	36	X	35898823	35898823	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KDM5C	8242	hgsc.bcm.edu	36	X	53240420	53240420	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AR	374	hgsc.bcm.edu	36	X	66681910	66681910	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AR	374	hgsc.bcm.edu	36	X	66681913	66681913	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KIAA2022	340533	hgsc.bcm.edu	36	X	73876714	73876714	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
FAM46D	169966	hgsc.bcm.edu	36	X	79584826	79584826	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
HMGN5	0	hgsc.bcm.edu	36	X	80256879	80256879	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AGTR2	186	hgsc.bcm.edu	36	X	115218609	115218609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ACTRT1	139741	hgsc.bcm.edu	36	X	127012920	127012920	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MAP7D3	79649	hgsc.bcm.edu	36	X	135130617	135130617	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NAA10	0	hgsc.bcm.edu	36	X	152848719	152848719	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CRIPAK	285464	hgsc.bcm.edu	36	4	1379005	1379005	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
WHSC1	7468	hgsc.bcm.edu	36	4	1932564	1932564	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
STK32B	55351	hgsc.bcm.edu	36	4	5519362	5519362	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C4orf35	85438	hgsc.bcm.edu	36	4	71235832	71235832	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C4orf35	85438	hgsc.bcm.edu	36	4	71235850	71235850	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ANKRD17	26057	hgsc.bcm.edu	36	4	74238555	74238555	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SFRP2	6423	hgsc.bcm.edu	36	4	154922125	154922125	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C2orf44	80304	hgsc.bcm.edu	36	2	24115308	24115308	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PLB1	151056	hgsc.bcm.edu	36	2	28705479	28705479	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
BIRC6	57448	hgsc.bcm.edu	36	2	32507737	32507737	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
REL	5966	hgsc.bcm.edu	36	2	60997525	60997525	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GKN1	56287	hgsc.bcm.edu	36	2	69059612	69059612	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
DQX1	165545	hgsc.bcm.edu	36	2	74600294	74600294	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ANKRD23	200539	hgsc.bcm.edu	36	2	96871526	96871526	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
VWA3B	200403	hgsc.bcm.edu	36	2	98170895	98170895	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
IL1RL1	9173	hgsc.bcm.edu	36	2	102326218	102326218	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CCNT2	905	hgsc.bcm.edu	36	2	135427554	135427554	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PPIG	9360	hgsc.bcm.edu	36	2	170201593	170201593	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PPIG	9360	hgsc.bcm.edu	36	2	170201655	170201655	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MYO3B	140469	hgsc.bcm.edu	36	2	170764908	170764908	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CIR1	7335	hgsc.bcm.edu	36	2	174921799	174921799	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PLEKHA3	65977	hgsc.bcm.edu	36	2	179058630	179058630	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AOX1	316	hgsc.bcm.edu	36	2	201235892	201235892	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RAPH1	65059	hgsc.bcm.edu	36	2	204062744	204062744	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PIKFYVE	200576	hgsc.bcm.edu	36	2	208898535	208898535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SPAG16	79582	hgsc.bcm.edu	36	2	213937079	213937079	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TNS1	7145	hgsc.bcm.edu	36	2	218422003	218422003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AGFG1	3267	hgsc.bcm.edu	36	2	228126694	228126694	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TRPM8	79054	hgsc.bcm.edu	36	2	234534423	234534423	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CXCR7	57007	hgsc.bcm.edu	36	2	237154599	237154599	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
COL6A3	1293	hgsc.bcm.edu	36	2	237942352	237942352	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MLLT3	4300	hgsc.bcm.edu	36	9	20404187	20404187	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MLLT3	4300	hgsc.bcm.edu	36	9	20404343	20404343	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
VPS13A	23230	hgsc.bcm.edu	36	9	79156162	79156162	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AGTPBP1	23287	hgsc.bcm.edu	36	9	87437733	87437733	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CDK20	0	hgsc.bcm.edu	36	9	89772324	89772324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
S1PR3	1903	hgsc.bcm.edu	36	9	90806788	90806788	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SEMA4D	10507	hgsc.bcm.edu	36	9	91185983	91185983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
COL27A1	85301	hgsc.bcm.edu	36	9	116109853	116109853	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
COL5A1	1289	hgsc.bcm.edu	36	9	136762022	136762022	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NOTCH1	4851	hgsc.bcm.edu	36	9	138510496	138510496	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LATS2	26524	hgsc.bcm.edu	36	13	20447228	20447228	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C13orf23	80209	hgsc.bcm.edu	36	13	38485388	38485388	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
RB1	5925	hgsc.bcm.edu	36	13	47849110	47849110	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TDRD3	81550	hgsc.bcm.edu	36	13	59982007	59982007	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CDC123	8872	hgsc.bcm.edu	36	10	12331618	12331618	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
FAM107B	83641	hgsc.bcm.edu	36	10	14603967	14603967	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PTCHD3	374308	hgsc.bcm.edu	36	10	27727579	27727579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ZNF33A	7581	hgsc.bcm.edu	36	10	38385276	38385276	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
AGAP4	119016	hgsc.bcm.edu	36	10	45641481	45641481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PTEN	5728	hgsc.bcm.edu	36	10	89710691	89710691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PTEN	5728	hgsc.bcm.edu	36	10	89710725	89710725	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
STAMBPL1	57559	hgsc.bcm.edu	36	10	90666466	90666466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CYP2C19	1557	hgsc.bcm.edu	36	10	96525278	96525278	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TAF5	6877	hgsc.bcm.edu	36	10	105128085	105128085	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
VWA2	340706	hgsc.bcm.edu	36	10	116022527	116022527	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
FGFR2	2263	hgsc.bcm.edu	36	10	123253309	123253309	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MKI67	4288	hgsc.bcm.edu	36	10	129791227	129791227	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ADCY2	108	hgsc.bcm.edu	36	5	7573992	7573992	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRDM9	56979	hgsc.bcm.edu	36	5	23559205	23559205	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C5orf42	65250	hgsc.bcm.edu	36	5	37213495	37213495	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C5orf44	80006	hgsc.bcm.edu	36	5	64993648	64993648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GPR98	84059	hgsc.bcm.edu	36	5	90110179	90110179	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SPATA9	83890	hgsc.bcm.edu	36	5	95020167	95020167	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
APC	324	hgsc.bcm.edu	36	5	112201245	112201245	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
APC	324	hgsc.bcm.edu	36	5	112203156	112203156	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
APC	324	hgsc.bcm.edu	36	5	112203355	112203355	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TRIM36	55521	hgsc.bcm.edu	36	5	114497651	114497651	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PCDHA9	9752	hgsc.bcm.edu	36	5	140210135	140210135	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PCDHA12	56137	hgsc.bcm.edu	36	5	140236807	140236807	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PCDHB5	26167	hgsc.bcm.edu	36	5	140495211	140495211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PCDHB7	56129	hgsc.bcm.edu	36	5	140533623	140533623	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PCDHGC5	56097	hgsc.bcm.edu	36	5	140850730	140850730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PDE6A	5145	hgsc.bcm.edu	36	5	149304421	149304421	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KCNIP1	30820	hgsc.bcm.edu	36	5	170095370	170095370	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
HK3	84376	hgsc.bcm.edu	36	5	176247220	176247220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TP53	7157	hgsc.bcm.edu	36	17	7520316	7520316	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SLC12A6	9990	hgsc.bcm.edu	36	15	32314808	32314808	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ZFX	7543	hgsc.bcm.edu	36	X	24135515	24135515	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
TNIP2	79155	hgsc.bcm.edu	36	4	2714046	2714046	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRKG1	5592	hgsc.bcm.edu	36	10	53492301	53492301	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LCE4A	199834	hgsc.bcm.edu	36	1	150948304	150948305	+	In_Frame_Ins	INS	-	-	AGCTCTGGGGGCTGCTGT	rs6143428	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRG4	23572	hgsc.bcm.edu	36	1	184542907	184542909	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRKRA	8575	hgsc.bcm.edu	36	2	179023981	179023982	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MUC4	4585	hgsc.bcm.edu	36	3	196992981	196993028	+	In_Frame_Del	DEL	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MUC4	4585	hgsc.bcm.edu	36	3	196999762	196999809	+	In_Frame_Del	DEL	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CRIPAK	285464	hgsc.bcm.edu	36	4	1378504	1378505	+	Frame_Shift_Del	DEL	CG	CG	-	rs55954740	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
C6orf132	647024	hgsc.bcm.edu	36	6	42183083	42183109	+	In_Frame_Del	DEL	GGTGGGGGTTCCAGCAGCAGGGGAGGT	GGTGGGGGTTCCAGCAGCAGGGGAGGT	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GGTGGGGGTTCCAGCAGCAGGGGAGGT	GGTGGGGGTTCCAGCAGCAGGGGAGGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GPRIN2	9721	hgsc.bcm.edu	36	10	46419597	46419598	+	In_Frame_Ins	INS	-	-	ATGAGGGAG	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MUC2	4583	hgsc.bcm.edu	36	11	1082802	1082802	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SAAL1	113174	hgsc.bcm.edu	36	11	18084134	18084135	+	In_Frame_Ins	INS	-	-	CGG	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NACA	4666	hgsc.bcm.edu	36	12	55398663	55398731	+	In_Frame_Del	DEL	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ORAI1	84876	hgsc.bcm.edu	36	12	120549157	120549162	+	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CCGCCA	CCGCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KRTAP4-8	728224	hgsc.bcm.edu	36	17	36507674	36507678	+	Frame_Shift_Del	DEL	GGTGG	GGTGG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GGTGG	GGTGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
HOXB1	3211	hgsc.bcm.edu	36	17	43963183	43963184	+	In_Frame_Ins	INS	-	-	GGGCGCTGT	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SF3A2	8175	hgsc.bcm.edu	36	19	2199165	2199185	+	In_Frame_Del	DEL	CCAGCCCCCGGGGTTCACCCA	CCAGCCCCCGGGGTTCACCCA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CCAGCCCCCGGGGTTCACCCA	CCAGCCCCCGGGGTTCACCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LSR	51599	hgsc.bcm.edu	36	19	40450115	40450116	+	In_Frame_Ins	INS	-	-	GGA	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SPINT2	10653	hgsc.bcm.edu	36	19	43472761	43472761	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KRTAP10-7	386675	hgsc.bcm.edu	36	21	44845084	44845098	+	Frame_Shift_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NEFH	4744	hgsc.bcm.edu	36	22	28215599	28215604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	AGGAAG	AGGAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ADM2	79924	hgsc.bcm.edu	36	22	49268015	49268032	+	In_Frame_Del	DEL	ACACTCGGGCCCCCGAAG	ACACTCGGGCCCCCGAAG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	ACACTCGGGCCCCCGAAG	ACACTCGGGCCCCCGAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LCE4A	199834	hgsc.bcm.edu	36	1	150948304	150948305	+	In_Frame_Ins	INS	-	-	AGCTCTGGGGGCTGCTGT	rs6143428	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRG4	23572	hgsc.bcm.edu	36	1	184542907	184542909	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
PRKRA	8575	hgsc.bcm.edu	36	2	179023981	179023982	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MUC4	4585	hgsc.bcm.edu	36	3	196992981	196993028	+	In_Frame_Del	DEL	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA	CTGAGGAAGGGCTAGTGACAGGAAGAGGCATGGTGTCACCTGTGGATA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MUC4	4585	hgsc.bcm.edu	36	3	196999762	196999809	+	In_Frame_Del	DEL	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT	GGTGACAGGAAGAGGGGTGGTGTGACCTGTGGATACTGAGGAAGGGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
CRIPAK	285464	hgsc.bcm.edu	36	4	1378504	1378505	+	Frame_Shift_Del	DEL	CG	CG	-	rs55954740	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
GPRIN2	9721	hgsc.bcm.edu	36	10	46419597	46419598	+	In_Frame_Ins	INS	-	-	ATGAGGGAG	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
MUC2	4583	hgsc.bcm.edu	36	11	1082802	1082802	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SAAL1	113174	hgsc.bcm.edu	36	11	18084134	18084135	+	In_Frame_Ins	INS	-	-	CGG	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NACA	4666	hgsc.bcm.edu	36	12	55398663	55398731	+	In_Frame_Del	DEL	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA	GGGGAGGGAGGAGTTGCAGCTGGGGGTGTGGGGGCCCATTTCGGGGATGGGGTAGCTGGGCCTCCTTTA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ORAI1	84876	hgsc.bcm.edu	36	12	120549157	120549162	+	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CCGCCA	CCGCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KRTAP4-8	728224	hgsc.bcm.edu	36	17	36507674	36507678	+	Frame_Shift_Del	DEL	GGTGG	GGTGG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	GGTGG	GGTGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
HOXB1	3211	hgsc.bcm.edu	36	17	43963183	43963184	+	In_Frame_Ins	INS	-	-	GGGCGCTGT	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SF3A2	8175	hgsc.bcm.edu	36	19	2199165	2199185	+	In_Frame_Del	DEL	CCAGCCCCCGGGGTTCACCCA	CCAGCCCCCGGGGTTCACCCA	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CCAGCCCCCGGGGTTCACCCA	CCAGCCCCCGGGGTTCACCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
LSR	51599	hgsc.bcm.edu	36	19	40450115	40450116	+	In_Frame_Ins	INS	-	-	GGA	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
SPINT2	10653	hgsc.bcm.edu	36	19	43472761	43472761	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
KRTAP10-7	386675	hgsc.bcm.edu	36	21	44845084	44845098	+	Frame_Shift_Del	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
NEFH	4744	hgsc.bcm.edu	36	22	28215599	28215604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	AGGAAG	AGGAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8
ADM2	79924	hgsc.bcm.edu	36	22	49268015	49268032	+	In_Frame_Del	DEL	ACACTCGGGCCCCCGAAG	ACACTCGGGCCCCCGAAG	-	novel	unknown	TCGA-AF-2693-01A-02D-1733-10	TCGA-AF-2693-10A-01D-1733-10	ACACTCGGGCCCCCGAAG	ACACTCGGGCCCCCGAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	6a691061-ed35-414c-b69a-cb3a2aace286	7b486a6f-0922-4cf3-8076-78ad05b7e7a8