Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ADAMTS14 140766 hgsc.bcm.edu 36 10 72181267 72181267 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_080722 exon17 c.C2455T p.R819C . . . P2RY6 5031 hgsc.bcm.edu 36 11 72685510 72685510 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_176798 exon4 c.G299A p.R100H . . . ERP27 121506 hgsc.bcm.edu 36 12 14979094 14979094 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_152321 exon3 c.A296G p.Y99C . . . KRAS 3845 hgsc.bcm.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_004985 exon2 c.G35A p.G12D KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . GEFT 115557 hgsc.bcm.edu 36 12 56296391 56296391 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_001111270 exon15 c.G1595A p.R532Q . . . E2F7 144455 hgsc.bcm.edu 36 12 75973853 75973853 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_203394 exon3 c.C282T p.A94A . . . E2F7 144455 hgsc.bcm.edu 36 12 75973884 75973884 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_203394 exon3 c.C251A p.T84K . . . DGKH 160851 hgsc.bcm.edu 36 13 41693478 41693478 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_178009 exon29 c.G3521A p.R1174H . . . PRMT7 54496 hgsc.bcm.edu 36 16 66930861 66930861 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_019023 exon8 c.G640A p.V214I . . . KIAA0195 9772 hgsc.bcm.edu 36 17 71001487 71001487 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_014738 exon18 c.G2302A p.E768K . . . EIF5A 1984 hgsc.bcm.edu 36 17 7153832 7153832 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_001143761 exon2 c.G154A p.G52S . . . APOC2 344 hgsc.bcm.edu 36 19 50143936 50143936 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_000483 exon3 c.C194T p.P65L . . . CACNG8 59283 hgsc.bcm.edu 36 19 59177222 59177222 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_031895 exon4 c.G585A p.E195E . . . CASZ1 54897 hgsc.bcm.edu 36 1 10642720 10642720 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_001079843 exon6 c.C966T p.G322G . . . FLG 2312 hgsc.bcm.edu 36 1 150543423 150543423 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_002016 exon3 c.C10563T p.S3521S . . . FCRL2 79368 hgsc.bcm.edu 36 1 156004900 156004900 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_030764 exon5 c.G811A p.G271S . . . CRB1 23418 hgsc.bcm.edu 36 1 195663662 195663662 + Missense_Mutation SNP C C A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_201253 exon7 c.C2584A p.L862M . . . MAN1C1 57134 hgsc.bcm.edu 36 1 25980140 25980140 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_020379 exon10 c.C1600T p.R534X . . . WDTC1 23038 hgsc.bcm.edu 36 1 27495466 27495466 + Nonsense_Mutation SNP C C A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_015023 exon10 c.C936A p.C312X . . . DEM1 64789 hgsc.bcm.edu 36 1 40753734 40753735 + Frame_Shift_Del DEL AA AA - novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 AA AA AA - AA AA Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_022774 exon3 c.931_932del p.311_311del . . . NINL 22981 hgsc.bcm.edu 36 20 25404725 25404725 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_025176 exon17 c.G3202A p.V1068I . . . CECR1 51816 hgsc.bcm.edu 36 22 16070464 16070464 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_017424 exon1 c.C104T p.A35V . . . TFPI 7035 hgsc.bcm.edu 36 2 188057124 188057124 + Silent SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_006287 exon6 c.G600A p.P200P . . . PIKFYVE 200576 hgsc.bcm.edu 36 2 208915560 208915560 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_015040 exon32 c.C4969T p.R1657X . . . NCOA1 8648 hgsc.bcm.edu 36 2 24749759 24749759 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_003743 exon5 c.G277A p.D93N . . . EEFSEC 60678 hgsc.bcm.edu 36 3 129466212 129466212 + Silent SNP G G T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_021937 exon4 c.G684T p.V228V . . . ACAD9 28976 hgsc.bcm.edu 36 3 130104104 130104104 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_014049 exon9 c.A901G p.N301D . . . IFT122 55764 hgsc.bcm.edu 36 3 130666267 130666267 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_052990 exon5 c.G360A p.P120P . . . FAT4 79633 hgsc.bcm.edu 36 4 126589839 126589839 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_024582 exon9 c.G8218T p.V2740F . . . POU4F2 5458 hgsc.bcm.edu 36 4 147781230 147781230 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_004575 exon2 c.G1050A p.T350T . . . FSTL5 56884 hgsc.bcm.edu 36 4 162595641 162595641 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_020116 exon15 c.C1806A p.F602L . . . TLL1 7092 hgsc.bcm.edu 36 4 167195830 167195830 + Silent SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_012464 exon13 c.C1677T p.D559D . . . UGT2B7 7364 hgsc.bcm.edu 36 4 70003195 70003195 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_001074 exon3 c.G952A p.E318K . . . APC 324 hgsc.bcm.edu 36 5 112202959 112202959 + Nonsense_Mutation SNP G G T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_001127511 exon14 c.G3715T p.E1239X . . . HAPLN1 1404 hgsc.bcm.edu 36 5 82973197 82973197 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_001884 exon5 c.C939T p.S313S . . . SIM1 6492 hgsc.bcm.edu 36 6 100944967 100944967 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_005068 exon11 c.C2292T p.N764N . . . MED23 9439 hgsc.bcm.edu 36 6 131950556 131950556 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_015979 exon30 c.C4081T p.P1361S . . . KIAA0776 23376 hgsc.bcm.edu 36 6 97104091 97104091 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_015323 exon14 c.C1603T p.R535C . . . EPHA1 2041 hgsc.bcm.edu 36 7 142805276 142805276 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_005232 exon8 c.C1474T p.R492W . . . GAL3ST4 79690 hgsc.bcm.edu 36 7 99596175 99596175 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_024637 exon4 c.C773T p.A258V . . . VPS13B 157680 hgsc.bcm.edu 36 8 100119860 100119860 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_152564 exon3 c.C181T p.H61Y . . . DLC1 10395 hgsc.bcm.edu 36 8 13001646 13001646 + Silent SNP G G A novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_182643 exon9 c.C2571T p.S857S . . . KIAA1539 80256 hgsc.bcm.edu 36 9 35098115 35098115 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3580-01A-01W-0831-10 TCGA-AG-3580-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 65b602ed-5deb-4ca7-92c9-2022f8c63fec b8472a0d-a2f7-4974-885c-971c5af10664 NM_025182 exon3 c.T157C p.F53L . . .