Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target PTPRE 5791 hgsc.bcm.edu 36 10 129751348 129751348 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_130435 exon7 c.G463A p.E155K . . . THNSL1 79896 hgsc.bcm.edu 36 10 25353681 25353681 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_024838 exon3 c.C1523T p.T508I . . . MYO3A 53904 hgsc.bcm.edu 36 10 26495014 26495014 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_017433 exon27 c.C3012T p.L1004L . . . MARCH8 220972 hgsc.bcm.edu 36 10 45348581 45348581 + Missense_Mutation SNP T T C novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001002266 exon2 c.A85G p.K29E . . . OR10S1 219873 hgsc.bcm.edu 36 11 123353102 123353102 + Silent SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001004474 exon1 c.C507T p.H169H . . . NELL1 4745 hgsc.bcm.edu 36 11 20825746 20825746 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_006157 exon4 c.G377A p.R126Q . . . UBQLNL 143630 hgsc.bcm.edu 36 11 5493610 5493610 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_145053 exon1 c.G638A p.R213H . . . EIF3F 8665 hgsc.bcm.edu 36 11 7969956 7969956 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_003754 exon2 c.C417T p.H139H . . . PC 5091 hgsc.bcm.edu 36 11 66373010 66373010 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001040716 exon23 c.G3473A p.R1158H . . . KRAS 3845 hgsc.bcm.edu 36 12 25289548 25289548 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_004985 exon2 c.G38A p.G13D KRAS,lung,NS,Substitution - Missense,-1 . . MCRS1 10445 hgsc.bcm.edu 36 12 48246482 48246482 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001012300 exon1 c.G8A p.R3H . . . STARD13 90627 hgsc.bcm.edu 36 13 32601505 32601505 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_178006 exon5 c.C1309T p.Q437X . . . PCDH17 27253 hgsc.bcm.edu 36 13 57106019 57106019 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001040429 exon1 c.C1338T p.D446D . . . PRKD1 5587 hgsc.bcm.edu 36 14 29117238 29117238 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_002742 exon17 c.G2514C p.W838C . . . HHIPL1 84439 hgsc.bcm.edu 36 14 99204946 99204946 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_032425 exon8 c.C1755T p.P585P . . . GLDN 342035 hgsc.bcm.edu 36 15 49483906 49483906 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_181789 exon10 c.C1319T p.S440L . . . SNX22 79856 hgsc.bcm.edu 36 15 62233216 62233216 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_024798 exon6 c.G422C p.S141T . . . SRCAP 10847 hgsc.bcm.edu 36 16 30653335 30653335 + Silent SNP G G C novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_006662 exon31 c.G6627C p.L2209L . . . CLUAP1 23059 hgsc.bcm.edu 36 16 3509976 3509976 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_024793 exon3 c.G154A p.E52K . . . WWP2 11060 hgsc.bcm.edu 36 16 68463211 68463211 + Silent SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_199423 exon8 c.G579A p.T193T . . . FAM65A 79567 hgsc.bcm.edu 36 16 66135815 66135815 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001193522 exon15 c.C2725T p.H909Y . . . CPD 1362 hgsc.bcm.edu 36 17 25815744 25815744 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001199775 exon21 c.C3188T p.S1063L . . . ASPA 443 hgsc.bcm.edu 36 17 3349057 3349057 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_000049 exon6 c.C867T p.Y289Y . . . TP53 7157 hgsc.bcm.edu 36 17 7517845 7517845 + Missense_Mutation SNP C C T rs28934576 unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001126114 exon8 c.G818A p.R273H TP53,central_nervous_system,brain,Substitution - Missense,-1 . . PDCD2L 84306 hgsc.bcm.edu 36 19 39592208 39592208 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_032346 exon4 c.C639T p.D213D . . . RP1-21O18.1 23254 hgsc.bcm.edu 36 1 15264782 15264782 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_201628 exon8 c.C1168T p.R390C . . . CD1A 909 hgsc.bcm.edu 36 1 156493384 156493384 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001763 exon4 c.C789T p.R263R . . . PKP1 5317 hgsc.bcm.edu 36 1 199549255 199549255 + Silent SNP C C A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_000299 exon3 c.C645A p.I215I . . . KCNH1 3756 hgsc.bcm.edu 36 1 209015449 209015449 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_002238 exon10 c.C1895A p.A632D . . . CDCP2 200008 hgsc.bcm.edu 36 1 54382759 54382759 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_201546 exon2 c.C395T p.A132V . . . RPE65 6121 hgsc.bcm.edu 36 1 68677857 68677857 + Nonsense_Mutation SNP G G A rs61752895 unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_000329 exon7 c.C700T p.R234X . . . ZBED4 9889 hgsc.bcm.edu 36 22 48664825 48664825 + Missense_Mutation SNP G G T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_014838 exon2 c.G1511T p.R504L . . . ERBB4 2066 hgsc.bcm.edu 36 2 212238416 212238416 + Missense_Mutation SNP A A T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_005235 exon15 c.T1748A p.F583Y . . . COL6A3 1293 hgsc.bcm.edu 36 2 237942441 237942441 + Silent SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_057166 exon7 c.C2583T p.I861I . . . HGD 3081 hgsc.bcm.edu 36 3 121840078 121840078 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_000187 exon12 c.G920A p.R307H . . . CNTN6 27255 hgsc.bcm.edu 36 3 1295107 1295107 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_014461 exon5 c.C369G p.D123E . . . SLC7A11 23657 hgsc.bcm.edu 36 4 139312566 139312567 + Frame_Shift_Ins INS - - T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_014331 exon12 c.1500_1501insA p.K500fs . . . CLOCK 9575 hgsc.bcm.edu 36 4 56031724 56031724 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_004898 exon8 c.G355A p.D119N . . . MAN2A1 4124 hgsc.bcm.edu 36 5 109077211 109077211 + Missense_Mutation SNP T T A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_002372 exon2 c.T227A p.V76D . . . APC 324 hgsc.bcm.edu 36 5 112192515 112192515 + Nonsense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001127511 exon12 c.C1636T p.R546X APC,large_intestine,NS,Substitution - Nonsense,0 . . PAIP2 51247 hgsc.bcm.edu 36 5 138727456 138727456 + Missense_Mutation SNP C C G novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001033112 exon2 c.C84G p.D28E . . . PCDHGC3 5098 hgsc.bcm.edu 36 5 140836010 140836010 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_032402 exon1 c.G143C p.G48A . . . STK10 6793 hgsc.bcm.edu 36 5 171477144 171477144 + Nonsense_Mutation SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_005990 exon4 c.C466T p.R156X . . . SYNE1 23345 hgsc.bcm.edu 36 6 152828245 152828245 + Silent SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_033071 exon18 c.C1794T p.T598T . . . FTSJD2 23070 hgsc.bcm.edu 36 6 37537310 37537310 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_015050 exon11 c.C1103T p.S368L . . . HTR1E 3354 hgsc.bcm.edu 36 6 87782395 87782395 + Silent SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_000865 exon2 c.G624A p.A208A . . . LRGUK 136332 hgsc.bcm.edu 36 7 133584312 133584312 + Missense_Mutation SNP T T G novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_144648 exon18 c.T2142G p.S714R . . . FAM180A 389558 hgsc.bcm.edu 36 7 135083817 135083817 + Missense_Mutation SNP A A G novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_205855 exon1 c.T52C p.S18P . . . CTSB 1508 hgsc.bcm.edu 36 8 11740694 11740694 + Missense_Mutation SNP G G C novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_147781 exon10 c.C807G p.H269Q . . . ELP3 55140 hgsc.bcm.edu 36 8 28103137 28103137 + Silent SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_018091 exon15 c.G1620A p.P540P . . . APBA1 320 hgsc.bcm.edu 36 9 71320770 71320770 + Missense_Mutation SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_001163 exon2 c.G1177A p.D393N . . . S1PR3 1903 hgsc.bcm.edu 36 9 90806581 90806581 + Missense_Mutation SNP G G A novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_005226 exon2 c.G646A p.A216T . . . WWC3 55841 hgsc.bcm.edu 36 X 10058062 10058062 + Silent SNP A A G novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_015691 exon18 c.A2499G p.P833P . . . KIF4A 24137 hgsc.bcm.edu 36 X 69490208 69490208 + Silent SNP C C T novel unknown TCGA-AG-3581-01A-01W-0831-10 TCGA-AG-3581-10A-01W-0831-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID 940c33a1-8598-42c3-b299-023d9532d86d 933eaf29-6dc5-4648-b2f2-4be136668997 NM_012310 exon15 c.C1500T p.T500T . . .