Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SORCS1	114815	hgsc.bcm.edu	36	10	108449120	108449120	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_052918	exon9	c.G1255T	p.D419Y	.	.	.
DKK1	22943	hgsc.bcm.edu	36	10	53746338	53746338	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_012242	exon4	c.G566C	p.C189S	.	.	.
UNC5B	219699	hgsc.bcm.edu	36	10	72727807	72727807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_170744	exon16	c.C2626T	p.R876W	.	.	.
FXYD6	53826	hgsc.bcm.edu	36	11	117217094	117217094	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001164837	exon6	c.G188A	p.C63Y	.	.	.
C11orf66	220004	hgsc.bcm.edu	36	11	61009392	61009392	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_145017	exon6	c.C517T	p.R173C	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131096328	131096328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_015409	exon39	c.G7127A	p.R2376Q	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
CNTN1	1272	hgsc.bcm.edu	36	12	39613917	39613917	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_175038	exon8	c.G922T	p.D308Y	.	.	.
CHD4	1108	hgsc.bcm.edu	36	12	6567777	6567777	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001273	exon23	c.C3413T	p.A1138V	.	.	.
DCLK1	9201	hgsc.bcm.edu	36	13	35343396	35343396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_004734	exon5	c.C905T	p.S302F	.	.	.
RNF219	79596	hgsc.bcm.edu	36	13	78111165	78111165	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_024546	exon4	c.A343T	p.S115C	.	.	.
GPC6	10082	hgsc.bcm.edu	36	13	93280728	93280728	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_005708	exon3	c.G640A	p.A214T	.	.	.
CTSG	1511	hgsc.bcm.edu	36	14	24113835	24113835	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001911	exon3	c.C225T	p.G75G	.	.	.
KTN1	3895	hgsc.bcm.edu	36	14	55166488	55166488	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_004986	exon7	c.G1141A	p.G381R	.	.	.
SPTB	6710	hgsc.bcm.edu	36	14	64309824	64309824	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001024858	exon24	c.G5045A	p.R1682H	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	78245622	78245622	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_004796	exon4	c.G412C	p.E138Q	.	.	.
KCNK13	56659	hgsc.bcm.edu	36	14	89720870	89720870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_022054	exon2	c.G997A	p.A333T	.	.	.
DICER1	23405	hgsc.bcm.edu	36	14	94636003	94636003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001195573	exon21	c.G4073A	p.R1358H	.	.	.
RILP	83547	hgsc.bcm.edu	36	17	1497927	1497927	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_031430	exon6	c.A896G	p.K299R	.	.	.
ERBB2	2064	hgsc.bcm.edu	36	17	35134858	35134858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001005862	exon24	c.G2434A	p.V812I	 ERBB2,stomach,NS,Substitution - Missense,0 	.	.
CA10	56934	hgsc.bcm.edu	36	17	47065916	47065916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_020178	exon8	c.G884A	p.R295H	.	.	.
CPLX4	339302	hgsc.bcm.edu	36	18	55114935	55114935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_181654	exon3	c.C458T	p.A153V	.	.	.
NETO1	81832	hgsc.bcm.edu	36	18	68683091	68683091	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_138999	exon3	c.G149T	p.G50V	.	.	.
ZNF540	163255	hgsc.bcm.edu	36	19	42795708	42795708	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_152606	exon5	c.C1687T	p.R563C	.	.	.
MAP3K10	4294	hgsc.bcm.edu	36	19	45402965	45402965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_002446	exon4	c.G1110A	p.L370L	.	.	.
FUT1	2523	hgsc.bcm.edu	36	19	53945329	53945329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_000148	exon4	c.C1022T	p.P341L	.	.	.
ELF3	1999	hgsc.bcm.edu	36	1	200249638	200249639	+	Frame_Shift_Ins	INS	-	-	AACG	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	-	-	-	AACG	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001114309	exon8	c.864_865insAACG	p.L288fs	.	.	.
COL11A1	1301	hgsc.bcm.edu	36	1	103240085	103240085	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001854	exon24	c.G2126T	p.G709V	.	.	.
PLOD1	5351	hgsc.bcm.edu	36	1	11940534	11940534	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_000302	exon8	c.G790A	p.E264K	.	.	.
ADAM30	11085	hgsc.bcm.edu	36	1	120239332	120239332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_021794	exon1	c.C1151T	p.S384L	.	.	.
KIAA0907	22889	hgsc.bcm.edu	36	1	154150578	154150578	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_014949	exon14	c.A1803G	p.Q601Q	.	.	.
OR10X1	128367	hgsc.bcm.edu	36	1	156815901	156815901	+	Missense_Mutation	SNP	C	C	T	rs41273507	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001004477	exon1	c.G413A	p.R138H	.	.	.
OR6K3	391114	hgsc.bcm.edu	36	1	156953775	156953775	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001005327	exon1	c.G755T	p.G252V	.	.	.
ADORA1	134	hgsc.bcm.edu	36	1	201364849	201364849	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001048230	exon2	c.C257T	p.P86L	.	.	.
LUZP1	7798	hgsc.bcm.edu	36	1	23290548	23290548	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_033631	exon4	c.T2794C	p.S932P	.	.	.
ZMYM4	9202	hgsc.bcm.edu	36	1	35628193	35628193	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_005095	exon15	c.C2494T	p.R832X	.	.	.
LPPR4	9890	hgsc.bcm.edu	36	1	99544975	99544975	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_014839	exon7	c.G2113A	p.V705I	.	.	.
HRNR	388697	hgsc.bcm.edu	36	1	150458090	150458090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001009931	exon3	c.G2639A	p.R880H	.	.	.
SYS1	90196	hgsc.bcm.edu	36	20	43427729	43427729	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001099791	exon3	c.C219T	p.N73N	.	.	.
GMEB2	26205	hgsc.bcm.edu	36	20	61694821	61694821	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_012384	exon7	c.C678T	p.T226T	.	.	.
ACR	49	hgsc.bcm.edu	36	22	49524764	49524764	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001097	exon2	c.A277G	p.K93E	.	.	.
IL1R2	7850	hgsc.bcm.edu	36	2	102007542	102007542	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_173343	exon7	c.C867T	p.R289R	.	.	.
BUB1	699	hgsc.bcm.edu	36	2	111141874	111141874	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_004336	exon7	c.A591G	p.I197M	.	.	.
NBAS	51594	hgsc.bcm.edu	36	2	15333203	15333203	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_015909	exon44	c.T5580A	p.P1860P	.	.	.
CSRNP3	80034	hgsc.bcm.edu	36	2	166244284	166244284	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001172173	exon7	c.C1533T	p.S511S	.	.	.
ERBB4	2066	hgsc.bcm.edu	36	2	212003993	212003993	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_005235	exon21	c.C2565A	p.N855K	.	.	.
GBX2	2637	hgsc.bcm.edu	36	2	236739387	236739387	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001485	exon2	c.G956A	p.R319Q	.	.	.
SPRED2	200734	hgsc.bcm.edu	36	2	65394643	65394643	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_181784	exon6	c.C753T	p.Y251Y	.	.	.
UROC1	131669	hgsc.bcm.edu	36	3	127689777	127689777	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_144639	exon18	c.C1744T	p.R582C	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126574905	126574905	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_024582	exon7	c.T7074C	p.N2358N	.	.	.
GLRB	2743	hgsc.bcm.edu	36	4	158284479	158284479	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001166060	exon8	c.C822T	p.Y274Y	.	.	.
APC	324	hgsc.bcm.edu	36	5	112191551	112191551	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001127511	exon11	c.C1521A	p.C507X	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
ADAMTS19	171019	hgsc.bcm.edu	36	5	129047847	129047847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_133638	exon18	c.G2782A	p.D928N	.	.	.
SASH1	23328	hgsc.bcm.edu	36	6	148888167	148888167	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_015278	exon11	c.C1257T	p.H419H	.	.	.
NOX3	50508	hgsc.bcm.edu	36	6	155791705	155791705	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_015718	exon9	c.C1060T	p.R354W	.	.	.
JARID2	3720	hgsc.bcm.edu	36	6	15595744	15595744	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_004973	exon6	c.C898T	p.R300W	.	.	.
GLP1R	2740	hgsc.bcm.edu	36	6	39141468	39141468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_002062	exon4	c.C287T	p.P96L	.	.	.
NDUFAF4	29078	hgsc.bcm.edu	36	6	97451366	97451366	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_014165	exon2	c.C215G	p.S72C	.	.	.
AASS	10157	hgsc.bcm.edu	36	7	121556683	121556683	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_005763	exon3	c.A355G	p.N119D	.	.	.
WDR91	29062	hgsc.bcm.edu	36	7	134531545	134531545	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_014149	exon8	c.C1135T	p.R379W	.	.	.
TRPA1	8989	hgsc.bcm.edu	36	8	73127548	73127548	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_007332	exon14	c.G1651T	p.A551S	.	.	.
ABCA1	19	hgsc.bcm.edu	36	9	106596579	106596579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_005502	exon40	c.G5416A	p.V1806M	.	.	.
DNM1	1759	hgsc.bcm.edu	36	9	130021281	130021281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_001005336	exon4	c.C518T	p.A173V	.	.	.
C9orf171	389799	hgsc.bcm.edu	36	9	134364659	134364659	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_207417	exon4	c.C483T	p.R161R	.	.	.
ERMP1	79956	hgsc.bcm.edu	36	9	5777593	5777593	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_024896	exon14	c.G2387T	p.G796V	.	.	.
SLC25A14	9016	hgsc.bcm.edu	36	X	129326303	129326303	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3599-01A-02W-0833-10	TCGA-AG-3599-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	285b8163-5c9f-4376-a108-006f70d22299	2dc2ec42-f7b6-4030-b2d3-ca56cca9ea29	NM_003951	exon7	c.G615A	p.Q205Q	.	.	.