Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target TLX1 3195 broad.mit.edu 36 10 102883965 102883965 + Silent SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001195517 exon2 c.G612A p.P204P . . . NRG3 10718 broad.mit.edu 36 10 84728813 84728813 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001165973 exon9 c.G877A p.E293K . . . NTM 50863 broad.mit.edu 36 11 131682903 131682903 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001144058 exon4 c.C637T p.R213W . . . MS4A14 84689 broad.mit.edu 36 11 59939988 59939988 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032597 exon5 c.C971A p.A324D . . . TMEM216 51259 broad.mit.edu 36 11 60918012 60918012 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016499 exon3 c.C34A p.R12S . . . LRP6 4040 broad.mit.edu 36 12 12288683 12288683 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002336 exon2 c.C229T p.R77X . . . KRAS 3845 broad.mit.edu 36 12 25289551 25289551 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004985 exon2 c.G35A p.G12D KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . SRSF2IP 9169 broad.mit.edu 36 12 44602211 44602211 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004719 exon15 c.A4279G p.T1427A . . . KRT85 3891 broad.mit.edu 36 12 51040929 51040929 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002283 exon9 c.G1499T p.S500I . . . KRT84 3890 broad.mit.edu 36 12 51061443 51061443 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033045 exon5 c.G1046A p.R349Q . . . KRT74 121391 broad.mit.edu 36 12 51253687 51253687 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_175053 exon1 c.C142T p.R48W . . . SRGAP1 57522 broad.mit.edu 36 12 62669992 62669992 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020762 exon3 c.G299A p.W100X . . . FLT1 2321 broad.mit.edu 36 13 27939214 27939214 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002019 exon3 c.G214A p.E72K . . . NBEA 26960 broad.mit.edu 36 13 34904464 34904464 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015678 exon39 c.C6238T p.R2080X . . . DYNC1H1 1778 broad.mit.edu 36 14 101531161 101531161 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001376 exon14 c.C3419T p.T1140M . . . KLC1 3831 broad.mit.edu 36 14 103206365 103206365 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001130107 exon7 c.C979T p.R327X . . . KCNH5 27133 broad.mit.edu 36 14 62542844 62542844 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_172376 exon3 c.G123T p.K41N . . . ADAM6 8755 broad.mit.edu 36 14 105425520 105425526 + Splice_Site DEL ACAGGAG - - novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 ACAGGAG ACAGGAG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . C15orf2 23742 broad.mit.edu 36 15 22472629 22472629 + Silent SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018958 exon1 c.C522T p.D174D . . . DMXL2 23312 broad.mit.edu 36 15 49626856 49626856 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015263 exon7 c.G609A p.W203X . . . ANPEP 290 broad.mit.edu 36 15 88145719 88145719 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001150 exon11 c.C1693A p.H565N . . . PHKG2 5261 broad.mit.edu 36 16 30670085 30670085 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001172432 exon3 c.G253A p.A85T . . . ZFHX3 463 broad.mit.edu 36 16 71388761 71388761 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006885 exon9 c.C5321A p.P1774H . . . KIAA1609 57707 broad.mit.edu 36 16 83086807 83086807 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020947 exon3 c.G367T p.A123S . . . TGIF1 7050 broad.mit.edu 36 18 3447365 3447366 + Frame_Shift_Ins INS - T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 - - - T - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_173208 exon4 c.246_247insT p.V82fs . . . MOCOS 55034 broad.mit.edu 36 18 32034273 32034273 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017947 exon4 c.C929T p.S310L . . . LMAN1 3998 broad.mit.edu 36 18 55164151 55164151 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005570 exon8 c.C935T p.P312L . . . POLI 11201 broad.mit.edu 36 18 50049956 50049958 + In_Frame_Del DEL CGA - - novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 CGA CGA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007195 exon1 c.42_44del p.14_15del . . . SIN3B 23309 broad.mit.edu 36 19 16834225 16834225 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015260 exon9 c.C1121T p.A374V . . . KIAA1683 80726 broad.mit.edu 36 19 18238810 18238811 + Missense_Mutation DNP GC AT AT novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 GC GC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025249 exon3 c.539_540AT . . . . HRC 3270 broad.mit.edu 36 19 54349884 54349884 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002152 exon1 c.C423A p.D141E . . . MYH14 79784 broad.mit.edu 36 19 55456605 55456605 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001077186 exon20 c.G2387A p.R796Q . . . C1orf43 25912 broad.mit.edu 36 1 152451451 152451451 + Missense_Mutation SNP A T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015449 exon5 c.T433A p.Y145N . . . HMCN1 83872 broad.mit.edu 36 1 184358776 184358776 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031935 exon81 c.T12300G p.C4100W . . . UBR4 23352 broad.mit.edu 36 1 19372037 19372037 + Silent SNP A T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020765 exon25 c.T3429A p.A1143A . . . USP48 84196 broad.mit.edu 36 1 21894167 21894167 + Silent SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032236 exon23 c.G2862A p.T954T . . . OR14C36 127066 broad.mit.edu 36 1 246579120 246579120 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001918 exon1 c.C421T p.Q141X . . . ARID1A 8289 broad.mit.edu 36 1 26960467 26960467 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006015 exon6 c.C2167T p.Q723X . . . TRNAU1AP 54952 broad.mit.edu 36 1 28759827 28759827 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017846 exon3 c.C221A p.T74K . . . PABPC4 8761 broad.mit.edu 36 1 39807104 39807104 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135653 exon6 c.G833A p.R278Q . . . SULF2 55959 broad.mit.edu 36 20 45723944 45723944 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198596 exon18 c.G2474A p.R825Q . . . HSPA13 6782 broad.mit.edu 36 21 14672523 14672523 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006948 exon3 c.C448T p.R150X . . . TIAM1 7074 broad.mit.edu 36 21 31424430 31424430 + Silent SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003253 exon26 c.G4017A p.A1339A TIAM1,large_intestine,rectum,Substitution - Missense,-1 . . HLCS 3141 broad.mit.edu 36 21 37191163 37191163 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000411 exon7 c.G1318A p.V440M . . . GAD1 2571 broad.mit.edu 36 2 171394353 171394353 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000817 exon4 c.C268T p.R90C . . . HIBCH 26275 broad.mit.edu 36 2 190785947 190785947 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014362 exon12 c.C991T p.R331W . . . RBM44 375316 broad.mit.edu 36 2 238391423 238391423 + Silent SNP T C C novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080504 exon3 c.T1125C p.C375C . . . ZNF638 27332 broad.mit.edu 36 2 71515393 71515393 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014497 exon28 c.A5885G p.K1962R . . . MYLK 4638 broad.mit.edu 36 3 124848777 124848777 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_053025 exon27 c.G4603A p.V1535I . . . CP 1356 broad.mit.edu 36 3 150376779 150376779 + Silent SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000096 exon18 c.C3129T p.T1043T . . . PIK3CA 5290 broad.mit.edu 36 3 180418786 180418786 + Missense_Mutation SNP A G G novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006218 exon10 c.A1634G p.E545G PIK3CA,urinary_tract,bladder,Substitution - Missense,+1 . . TTC21A 199223 broad.mit.edu 36 3 39137540 39137540 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001105513 exon8 c.C826T p.R276C . . . VPRBP 9730 broad.mit.edu 36 3 51425503 51425503 + Missense_Mutation SNP T C C novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001171904 exon20 c.A3932G p.Y1311C . . . ADH1A 124 broad.mit.edu 36 4 100427745 100427745 + Missense_Mutation SNP T A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000667 exon2 c.A119T p.K40M . . . TET2 54790 broad.mit.edu 36 4 106376939 106376939 + Silent SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017628 exon3 c.C2391T p.F797F . . . SEC24B 10427 broad.mit.edu 36 4 110604238 110604238 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006323 exon2 c.C866T p.P289L . . . AP1AR 55435 broad.mit.edu 36 4 113406361 113406361 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018569 exon8 c.G463A p.E155K . . . FAT4 79633 broad.mit.edu 36 4 126630964 126630964 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024582 exon17 c.G13537A p.A4513T . . . LYAR 55646 broad.mit.edu 36 4 4336263 4336263 + Silent SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145725 exon3 c.C108T p.C36C . . . CEP135 9662 broad.mit.edu 36 4 56525212 56525212 + Nonsense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025009 exon7 c.C715T p.R239X . . . ENAM 10117 broad.mit.edu 36 4 71727125 71727125 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031889 exon9 c.G1118A p.R373H . . . APC 324 broad.mit.edu 36 5 112198590 112198590 + Nonsense_Mutation SNP C G G novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127511 exon13 c.C1733G p.S578X APC,large_intestine,NS,Substitution - Nonsense,0 . . DMXL1 1657 broad.mit.edu 36 5 118496801 118496801 + Missense_Mutation SNP A C C novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005509 exon11 c.A1391C p.N464T . . . KIAA0141 9812 broad.mit.edu 36 5 141298362 141298362 + Missense_Mutation SNP C T T rs10056676 byCluster;byFrequency;byHapMap TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001142603 exon12 c.C1402T p.R468C . . . GABRB2 2561 broad.mit.edu 36 5 160690468 160690468 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000813 exon9 c.G1077T p.K359N . . . RIOK2 55781 broad.mit.edu 36 5 96524673 96524673 + Nonsense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018343 exon10 c.C1507T p.Q503X . . . UTRN 7402 broad.mit.edu 36 6 144822168 144822168 + Missense_Mutation SNP C G G novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_007124 exon20 c.C2692G p.Q898E . . . PGBD1 84547 broad.mit.edu 36 6 28377487 28377487 + Missense_Mutation SNP T G G novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001184743 exon7 c.T1877G p.F626C . . . PTK7 5754 broad.mit.edu 36 6 43219336 43219336 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152880 exon13 c.G2131A p.G711S . . . OR9A4 130075 broad.mit.edu 36 7 141266063 141266063 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001656 exon1 c.C919T p.R307C . . . DAGLB 221955 broad.mit.edu 36 7 6442601 6442601 + Silent SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139179 exon3 c.C336T p.A112A . . . GNAI1 2770 broad.mit.edu 36 7 79678320 79678320 + Silent SNP C T T rs71555062 unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002069 exon6 c.C690T p.Y230Y . . . ZKSCAN1 7586 broad.mit.edu 36 7 99468947 99468947 + Missense_Mutation SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003439 exon6 c.G883A p.G295R . . . ABRA 137735 broad.mit.edu 36 8 107851344 107851344 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_139166 exon1 c.G251A p.R84H . . . CSMD1 64478 broad.mit.edu 36 8 2810761 2810761 + Missense_Mutation SNP C T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033225 exon59 c.G9224A p.R3075H . . . CRISPLD1 83690 broad.mit.edu 36 8 76091443 76091443 + Silent SNP G A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031461 exon7 c.G816A p.R272R . . . NIPAL2 79815 broad.mit.edu 36 8 99286553 99286553 + Missense_Mutation SNP C A A novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024759 exon7 c.G753T p.M251I . . . FGD3 89846 broad.mit.edu 36 9 94778720 94778721 + Frame_Shift_Ins INS - C C novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033086 exon3 c.361_362insC p.T121fs . . . DBC1 1620 broad.mit.edu 36 9 121010964 121010964 + Silent SNP G T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014618 exon7 c.C999A p.G333G . . . STRBP 55342 broad.mit.edu 36 9 124949009 124949009 + Silent SNP T G G novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001171137 exon13 c.A1242C p.T414T . . . MAMDC2 256691 broad.mit.edu 36 9 71849348 71849348 + Silent SNP G T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153267 exon2 c.G63T p.L21L . . . FAM75D1 389763 broad.mit.edu 36 9 83795967 83795967 + Missense_Mutation SNP G T T novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001670 exon4 c.G762T p.E254D . . . BCOR 54880 broad.mit.edu 36 X 39817153 39817154 + Frame_Shift_Del DEL AC - - novel unknown TCGA-AG-3878-01A-02W-0899-10 TCGA-AG-3878-10A-01W-0901-10 AC AC AC - AC AC Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001123383 exon4 c.2389_2390del p.797_797del . . .