Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf119	79892	broad.mit.edu	36	10	121586407	121586407	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024834	exon13	c.A1539G	p.S513S	.	.	.
MCM10	55388	broad.mit.edu	36	10	13291290	13291290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018518	exon20	c.G2599A	p.A867T	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252392	55252392	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142767	exon31	c.T4980C	p.L1660L	.	.	.
RDX	5962	broad.mit.edu	36	11	109609291	109609291	+	Missense_Mutation	SNP	C	T	T	rs34471100	byCluster;byFrequency	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002906	exon13	c.G1468A	p.D490N	.	.	.
ZW10	9183	broad.mit.edu	36	11	113119861	113119861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004724	exon10	c.G1384A	p.E462K	.	.	.
GTF2H1	2965	broad.mit.edu	36	11	18313901	18313901	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142307	exon4	c.A179C	p.K60T	.	.	.
OR10A3	26496	broad.mit.edu	36	11	7916791	7916791	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003745	exon1	c.C853A	p.L285I	.	.	.
GPR19	2842	broad.mit.edu	36	12	12705914	12705914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006143	exon4	c.G736A	p.V246I	.	.	.
SLCO1A2	6579	broad.mit.edu	36	12	21313905	21313905	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_134431	exon16	c.C1857G	p.I619M	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39619481	39619481	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175038	exon11	c.T1273A	p.C425S	.	.	.
ZNF705A	440077	broad.mit.edu	36	12	8220912	8220912	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004328	exon5	c.A369C	p.E123D	.	.	.
DIAPH3	81624	broad.mit.edu	36	13	59333601	59333601	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030932	exon16	c.A1889T	p.K630M	.	.	.
DIS3	22894	broad.mit.edu	36	13	72233922	72233922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128226	exon18	c.G2284A	p.A762T	.	.	.
FARP1	10160	broad.mit.edu	36	13	97818391	97818391	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005766	exon5	c.T339G	p.V113V	.	.	.
C15orf55	256646	broad.mit.edu	36	15	32435319	32435319	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175741	exon7	c.C1734G	p.P578P	.	.	.
LRRC49	54839	broad.mit.edu	36	15	68972290	68972290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017691	exon1	c.G3A	p.M1I	.	.	.
C15orf51	196968	broad.mit.edu	36	15	98158778	98158778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LCMT1	51451	broad.mit.edu	36	16	25051224	25051224	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016309	exon3	c.G206T	p.G69V	.	.	.
KIFC3	3801	broad.mit.edu	36	16	56361281	56361281	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130100	exon8	c.A1027G	p.I343V	.	.	.
TP53	7157	broad.mit.edu	36	17	7514748	7514749	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126112	exon10	c.1004_1005insA	p.R335fs	.	.	.
SHMT1	6470	broad.mit.edu	36	17	18174666	18174666	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004169	exon10	c.G1099T	p.G367C	.	.	.
ZNF830	91603	broad.mit.edu	36	17	30313578	30313578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052857	exon1	c.G880A	p.E294K	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29577781	29577781	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030632	exon12	c.T3971A	p.L1324Q	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43628927	43628927	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135937	exon7	c.C824T	p.P275L	.	.	.
LYPD3	27076	broad.mit.edu	36	19	48657487	48657487	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014400	exon5	c.C897T	p.G299G	.	.	.
KIR2DL1	3802	broad.mit.edu	36	19	59986954	59986954	+	Silent	SNP	C	T	T	rs2916014	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014218	exon8	c.C924T	p.C308C	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60144740	60144740	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139176	exon2	c.G152T	p.G51V	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61742829	61742829	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020828	exon2	c.C232G	p.L78V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8946910	8946910	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon1	c.C5905A	p.P1969T	.	.	.
MYOM3	127294	broad.mit.edu	36	1	24307304	24307305	+	De_novo_Start_OutOfFrame	INS	-	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10637139	10637139	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001079843	exon10	c.C1762T	p.R588C	.	.	.
SEMA6C	10500	broad.mit.edu	36	1	149373904	149373904	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178061	exon16	c.C1652A	p.S551Y	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152357784	152357784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207308	exon11	c.G1451A	p.R484H	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153594015	153594015	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018489	exon14	c.C6945A	p.H2315Q	.	.	.
CD1E	913	broad.mit.edu	36	1	156593201	156593201	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001185107	exon5	c.A788C	p.N263T	.	.	.
OR10Z1	128368	broad.mit.edu	36	1	156843052	156843052	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004478	exon1	c.C200T	p.S67F	.	.	.
SMG7	9887	broad.mit.edu	36	1	181781851	181781851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174061	exon16	c.C2372T	p.P791L	.	.	.
LGR6	59352	broad.mit.edu	36	1	200554043	200554043	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021636	exon18	c.C1833T	p.A611A	.	.	.
LYST	1130	broad.mit.edu	36	1	233987246	233987246	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000081	exon24	c.C7017T	p.L2339L	.	.	.
CHML	1122	broad.mit.edu	36	1	239864700	239864700	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001821	exon1	c.T992A	p.L331Q	.	.	.
CYP4Z1	199974	broad.mit.edu	36	1	47306956	47306956	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178134	exon2	c.G253A	p.G85R	.	.	.
STIL	6491	broad.mit.edu	36	1	47540583	47540583	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001048166	exon4	c.G175C	p.E59Q	.	.	.
PDYN	5173	broad.mit.edu	36	20	1909312	1909312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190892	exon3	c.C422T	p.A141V	.	.	.
PTGIS	5740	broad.mit.edu	36	20	47589565	47589565	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000961	exon5	c.C622T	p.R208C	.	.	.
MERTK	10461	broad.mit.edu	36	2	112403408	112403408	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006343	exon2	c.G302T	p.G101V	.	.	.
MBD5	55777	broad.mit.edu	36	2	148964125	148964125	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018328	exon12	c.G3755T	p.R1252I	.	.	.
OBFC2A	64859	broad.mit.edu	36	2	192251648	192251648	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031716	exon1	c.A63G	p.L21L	.	.	.
EPHA4	2043	broad.mit.edu	36	2	222002940	222002940	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004438	exon15	c.C2672T	p.T891I	.	.	.
ANKMY1	51281	broad.mit.edu	36	2	241112205	241112205	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016552	exon7	c.G1335C	p.V445V	.	.	.
PPP1CB	5500	broad.mit.edu	36	2	28853325	28853325	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206876	exon3	c.G157A	p.E53K	.	.	.
PCYT1A	5130	broad.mit.edu	36	3	197481691	197481691	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005017	exon3	c.T109G	p.C37G	.	.	.
STAC	6769	broad.mit.edu	36	3	36459927	36459927	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003149	exon2	c.T179G	p.F60C	.	.	.
CENPE	1062	broad.mit.edu	36	4	104286450	104286450	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001813	exon30	c.A4398G	p.K1466K	.	.	.
TET2	54790	broad.mit.edu	36	4	106376120	106376120	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017628	exon3	c.G1572A	p.E524E	.	.	.
NDST3	9348	broad.mit.edu	36	4	119195394	119195394	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004784	exon2	c.G881T	p.G294V	.	.	.
TADA2B	93624	broad.mit.edu	36	4	7107052	7107052	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152293	exon2	c.G633A	p.R211R	.	.	.
ZNF474	133923	broad.mit.edu	36	5	121516476	121516476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207317	exon2	c.C892T	p.R298C	.	.	.
HMMR	3161	broad.mit.edu	36	5	162842359	162842359	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012485	exon12	c.C1471G	p.Q491E	.	.	.
SREK1IP1	285672	broad.mit.edu	36	5	64059726	64059726	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173829	exon4	c.G242C	p.S81T	.	.	.
APC	324	broad.mit.edu	36	5	112201992	112201992	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.2748delT	p.T916fs	.	.	.
OLIG3	167826	broad.mit.edu	36	6	137856723	137856723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175747	exon1	c.G278A	p.R93H	.	.	.
PLEKHG1	57480	broad.mit.edu	36	6	151194844	151194844	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029884	exon16	c.C2904A	p.A968A	.	.	.
C6orf138	442213	broad.mit.edu	36	6	47955313	47955313	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001013732	exon3	c.T1226C	p.I409T	.	.	.
CDYL	9425	broad.mit.edu	36	6	4882854	4882855	+	Missense_Mutation	DNP	GG	TT	TT	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143970	exon4	c.609_610TT	.	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57120518	57120518	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015555	exon10	c.A1676G	p.Y559C	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75869098	75869098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004370	exon56	c.C8350T	p.P2784S	.	.	.
FERD3L	222894	broad.mit.edu	36	7	19151417	19151417	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152898	exon1	c.G94A	p.D32N	.	.	.
GPNMB	10457	broad.mit.edu	36	7	23266721	23266721	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005340	exon6	c.C822G	p.L274L	.	.	.
ZNF138	7697	broad.mit.edu	36	7	63929506	63929506	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006524	exon3	c.T373C	p.F125L	.	.	.
ADCY8	114	broad.mit.edu	36	8	131985419	131985419	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001115	exon7	c.C1692T	p.N564N	.	.	.
LZTS1	11178	broad.mit.edu	36	8	20151728	20151728	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021020	exon3	c.C1576A	p.Q526K	.	.	.
PREX2	80243	broad.mit.edu	36	8	69180008	69180008	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025170	exon24	c.A2797C	p.S933R	.	.	.
KCNB2	9312	broad.mit.edu	36	8	73642561	73642561	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004770	exon2	c.C38A	p.T13N	.	.	.
TSPYL5	85453	broad.mit.edu	36	8	98358122	98358122	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033512	exon1	c.A1127T	p.N376I	.	.	.
FAM166B	730112	broad.mit.edu	36	9	35552393	35552394	+	Frame_Shift_Ins	INS	-	TAGT	TAGT	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164310	exon5	c.723_724insACTA	p.Y241_G242delinsX	.	.	.
PLIN2	123	broad.mit.edu	36	9	19116236	19116236	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122	exon3	c.C102G	p.L34L	.	.	.
NGFRAP1	27018	broad.mit.edu	36	X	102519388	102519388	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206917	exon3	c.G283A	p.D95N	.	.	.
DDX26B	203522	broad.mit.edu	36	X	134541630	134541630	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182540	exon15	c.G2260C	p.D754H	.	.	.
MCF2	4168	broad.mit.edu	36	X	138536485	138536485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099855	exon8	c.C715T	p.H239Y	.	.	.
L1CAM	3897	broad.mit.edu	36	X	152789576	152789576	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143963	exon5	c.C542T	p.T181M	.	.	.
CXorf59	286464	broad.mit.edu	36	X	36001209	36001209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-3890-01A-01W-1073-09	TCGA-AG-3890-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173695	exon4	c.G223A	p.D75N	.	.	.