Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
FAM178A	55719	broad.mit.edu	36	10	102697594	102697594	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018121	exon15	c.G3120T	p.Q1040H	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103911956	103911956	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004741	exon13	c.C2040T	p.G680G	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114902139	114902139	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146284	exon10	c.C1138T	p.R380X	.	.	.
C10orf137	26098	broad.mit.edu	36	10	127398409	127398409	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015608	exon1	c.G43C	p.G15R	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49120382	49120382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018071	exon5	c.C395T	p.P132L	.	.	.
KCNJ1	3758	broad.mit.edu	36	11	128215229	128215229	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153765	exon3	c.G120T	p.Q40H	.	.	.
OPCML	4978	broad.mit.edu	36	11	131812389	131812389	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001012393	exon5	c.G580A	p.E194K	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33537918	33537918	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012194	exon6	c.C3012T	p.V1004V	.	.	.
C11orf85	283129	broad.mit.edu	36	11	64463786	64463786	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037225	exon9	c.C576T	p.G192G	.	.	.
P4HA3	283208	broad.mit.edu	36	11	73686983	73686983	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182904	exon4	c.A639G	p.G213G	.	.	.
GRM5	2915	broad.mit.edu	36	11	87940192	87940192	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000842	exon8	c.C2307T	p.N769N	.	.	.
ANAPC5	51433	broad.mit.edu	36	12	120274332	120274332	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016237	exon1	c.G195A	p.L65L	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G34T	p.G12C	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.
SYT10	341359	broad.mit.edu	36	12	33470541	33470541	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198992	exon2	c.C308G	p.A103G	.	.	.
ARID2	196528	broad.mit.edu	36	12	44497821	44497821	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152641	exon5	c.G520T	p.D174Y	.	.	.
KRT73	319101	broad.mit.edu	36	12	51298473	51298473	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175068	exon1	c.G103T	p.G35W	.	.	.
DCTN2	10540	broad.mit.edu	36	12	56214043	56214043	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006400	exon7	c.A630G	p.T210T	.	.	.
SLC2A3	6515	broad.mit.edu	36	12	7974461	7974461	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006931	exon5	c.G555A	p.P185P	.	.	.
EEA1	8411	broad.mit.edu	36	12	91737400	91737400	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003566	exon14	c.C1543G	p.L515V	.	.	.
NDRG2	57447	broad.mit.edu	36	14	20559833	20559833	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016250	exon6	c.C348T	p.C116C	.	.	.
MESDC2	23184	broad.mit.edu	36	15	79061419	79061419	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015154	exon2	c.A373G	p.T125A	.	.	.
CHD2	1106	broad.mit.edu	36	15	91368807	91368808	+	Missense_Mutation	DNP	AG	TT	TT	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001271	exon39	c.5355_5356TT	.	.	.	.
SCNN1G	6340	broad.mit.edu	36	16	23105241	23105241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039	exon2	c.C148T	p.R50C	.	.	.
MAPK3	5595	broad.mit.edu	36	16	30035546	30035546	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002746	exon8	c.G1084T	p.E362X	.	.	.
RAB11FIP4	84440	broad.mit.edu	36	17	26882807	26882808	+	Nonsense_Mutation	DNP	CA	GG	GG	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032932	exon15	c.1851_1852GG	.	.	.	.
CCL18	6362	broad.mit.edu	36	17	31422007	31422007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002988	exon2	c.C155A	p.P52H	.	.	.
SPNS3	201305	broad.mit.edu	36	17	4284138	4284138	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182538	exon1	c.A127C	p.R43R	.	.	.
BPTF	2186	broad.mit.edu	36	17	63386220	63386220	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182641	exon24	c.T8028C	p.A2676A	.	.	.
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.C742T	p.R248W	 TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.
OR3A4	390756	broad.mit.edu	36	17	3161279	3161279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LRRC30	339291	broad.mit.edu	36	18	7221726	7221726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105581	exon1	c.G590A	p.R197H	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36462114	36462114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020856	exon2	c.C425T	p.S142F	.	.	.
SIPA1L3	23094	broad.mit.edu	36	19	43302283	43302283	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015073	exon9	c.A2789G	p.Y930C	.	.	.
CGB2	114336	broad.mit.edu	36	19	54228218	54228218	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033378	exon3	c.G420C	p.K140N	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59087643	59087643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002739	exon7	c.G755A	p.R252H	.	.	.
PRAMEF4	400735	broad.mit.edu	36	1	12864394	12864394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009611	exon3	c.G743A	p.R248H	.	.	.
KCNJ9	3765	broad.mit.edu	36	1	158324044	158324044	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004983	exon3	c.C995A	p.S332X	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37118832	37118832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000831	exon3	c.C540T	p.D180D	.	.	.
MRPL37	51253	broad.mit.edu	36	1	54450822	54450822	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016491	exon5	c.A893T	p.N298I	.	.	.
MACROD2	140733	broad.mit.edu	36	20	15814456	15814456	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001033087	exon6	c.G70T	p.D24Y	.	.	.
MYLK2	85366	broad.mit.edu	36	20	29875029	29875030	+	Nonsense_Mutation	DNP	CA	TT	TT	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033118	exon5	c.861_862TT	.	.	.	.
IL2RB	3560	broad.mit.edu	36	22	35854415	35854416	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000878	exon10	c.1323_1324insC	p.P441fs	.	.	.
UPB1	51733	broad.mit.edu	36	22	23226172	23226172	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016327	exon2	c.C202T	p.R68X	.	.	.
PLEKHA3	65977	broad.mit.edu	36	2	179063725	179063725	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019091	exon3	c.G251A	p.W84X	.	.	.
TTN	7273	broad.mit.edu	36	2	179217579	179217579	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133378	exon167	c.A32714C	p.K10905T	.	.	.
TTN	7273	broad.mit.edu	36	2	179312332	179312332	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon45	c.C12784A	p.L4262I	.	.	.
CXCR2	3579	broad.mit.edu	36	2	218708102	218708102	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001557	exon3	c.C333A	p.G111G	.	.	.
CPNE4	131034	broad.mit.edu	36	3	132898093	132898093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130808	exon5	c.C490T	p.R164W	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52800662	52800662	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166434	exon19	c.A2158G	p.N720D	.	.	.
MTTP	4547	broad.mit.edu	36	4	100751334	100751334	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000253	exon14	c.G1781A	p.R594H	.	.	.
ANK2	287	broad.mit.edu	36	4	114508272	114508272	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020977	exon41	c.G4879A	p.V1627I	.	.	.
PRSS48	345062	broad.mit.edu	36	4	152417776	152417776	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183375	exon1	c.T2C	p.M1T	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155461030	155461030	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017639	exon14	c.C3606T	p.S1202S	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851202	156851202	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130682	exon6	c.C435T	p.Y145Y	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62461047	62461047	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015236	exon10	c.C1885T	p.R629C	.	.	.
THAP9	79725	broad.mit.edu	36	4	84057816	84057816	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024672	exon5	c.A1427C	p.N476T	.	.	.
APC	324	broad.mit.edu	36	5	112179160	112179160	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon7	c.C850T	p.R284X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203154	112203154	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.G3910T	p.E1304X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
PCDHB9	56127	broad.mit.edu	36	5	140548995	140548995	+	Silent	SNP	G	C	C	rs71583634	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019119	exon1	c.G1919C	p.W640S	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167352737	167352737	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122679	exon5	c.C1158A	p.L386L	.	.	.
UIMC1	51720	broad.mit.edu	36	5	176329306	176329306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199298	exon5	c.G365A	p.R122Q	.	.	.
CDH18	1016	broad.mit.edu	36	5	19519283	19519283	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004934	exon12	c.G1766T	p.C589F	.	.	.
TAAR6	319100	broad.mit.edu	36	6	132933162	132933162	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175067	exon1	c.C9A	p.S3R	.	.	.
GRM1	2911	broad.mit.edu	36	6	146762202	146762202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114329	exon8	c.C2334T	p.P778P	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159590195	159590195	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032532	exon16	c.C4825T	p.R1609X	.	.	.
OR12D3	81797	broad.mit.edu	36	6	29450550	29450550	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030959	exon1	c.G494T	p.S165I	.	.	.
VARS2	57176	broad.mit.edu	36	6	30997916	30997916	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167733	exon19	c.G1431A	p.T477T	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88026789	88026789	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015021	exon8	c.C6723T	p.H2241H	.	.	.
CCDC136	64753	broad.mit.edu	36	7	128245126	128245126	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022742	exon17	c.T3442C	p.W1148R	.	.	.
WEE2	494551	broad.mit.edu	36	7	141055294	141055294	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105558	exon1	c.C267T	p.L89L	.	.	.
ESYT2	57488	broad.mit.edu	36	7	158227020	158227020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020728	exon17	c.C2204T	p.P735L	.	.	.
GPR141	353345	broad.mit.edu	36	7	37746826	37746826	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181791	exon1	c.G306A	p.T102T	.	.	.
PON1	5444	broad.mit.edu	36	7	94775266	94775266	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000446	exon6	c.G691A	p.D231N	.	.	.
AZGP1	563	broad.mit.edu	36	7	99407478	99407478	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001185	exon2	c.A164G	p.D55G	.	.	.
SORBS3	10174	broad.mit.edu	36	8	22470258	22470258	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005775	exon4	c.C306G	p.N102K	.	.	.
KIAA1967	57805	broad.mit.edu	36	8	22529294	22529294	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021174	exon13	c.C1532A	p.A511E	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88433124	88433124	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173538	exon9	c.C1138T	p.R380X	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112231361	112231361	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153366	exon35	c.C5690T	p.P1897L	.	.	.
NFX1	4799	broad.mit.edu	36	9	33301154	33301154	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_147134	exon6	c.C1427A	p.T476K	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99162166	99162167	+	Missense_Mutation	DNP	AG	CT	CT	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020893	exon26	c.3577_3578CT	.	.	.	.
UBE2NL	389898	broad.mit.edu	36	X	142795175	142795175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001012989	exon1	c.C307T	p.R103C	.	.	.
DMD	1756	broad.mit.edu	36	X	32270236	32270236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004011	exon13	c.G1801A	p.A601T	.	.	.
DACH2	117154	broad.mit.edu	36	X	85956361	85956361	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A032-01A-01W-A00E-09	TCGA-AG-A032-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053281	exon10	c.C1552T	p.R518C	.	.	.