Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
GPR123	84435	broad.mit.edu	36	10	134790760	134790760	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083909	exon6	c.C435A	p.I145I	.	.	.
WAC	51322	broad.mit.edu	36	10	28940744	28940744	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_100486	exon9	c.T1015C	p.S339P	.	.	.
TBC1D12	23232	broad.mit.edu	36	10	96250064	96250064	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015188	exon6	c.T1509C	p.N503N	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105350371	105350371	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077243	exon16	c.A2534C	p.K845T	.	.	.
KIAA1826	84437	broad.mit.edu	36	11	105385501	105385501	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032424	exon3	c.C1009T	p.R337X	.	.	.
C11orf87	399947	broad.mit.edu	36	11	108800072	108800072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207645	exon2	c.C503T	p.P168L	.	.	.
SCN2B	6327	broad.mit.edu	36	11	117542965	117542965	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004588	exon4	c.C495T	p.S165S	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1228864	1228864	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002458	exon31	c.C14178A	p.S4726S	.	.	.
CDON	50937	broad.mit.edu	36	11	125394763	125394763	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016952	exon4	c.C457T	p.R153C	.	.	.
SPTY2D1	144108	broad.mit.edu	36	11	18592942	18592942	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194285	exon3	c.G1455A	p.P485P	.	.	.
PRRG4	79056	broad.mit.edu	36	11	32831549	32831549	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024081	exon6	c.C581T	p.A194V	.	.	.
OR4X2	119764	broad.mit.edu	36	11	48224046	48224046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004727	exon1	c.C815T	p.A272V	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4892529	4892529	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005238	exon1	c.A941G	p.Y314C	.	.	.
RRP8	23378	broad.mit.edu	36	11	6579154	6579154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015324	exon3	c.G718A	p.A240T	.	.	.
TYR	7299	broad.mit.edu	36	11	88600666	88600666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000372	exon3	c.C1064T	p.A355V	.	.	.
FAT3	120114	broad.mit.edu	36	11	92174399	92174399	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008781	exon9	c.C8572T	p.Q2858X	.	.	.
PTPN11	5781	broad.mit.edu	36	12	111410653	111410653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002834	exon12	c.C1403T	p.T468M	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122380991	122380991	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018183	exon8	c.C1059T	p.D353D	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129485375	129485375	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015347	exon11	c.G2059T	p.E687X	.	.	.
RAN	5901	broad.mit.edu	36	12	129923392	129923392	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006325	exon3	c.C95T	p.T32I	.	.	.
PYROXD1	79912	broad.mit.edu	36	12	21481994	21481994	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024854	exon1	c.G63C	p.A21A	.	.	.
IFLTD1	160492	broad.mit.edu	36	12	25590735	25590735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145727	exon2	c.C79T	p.P27S	 IFLTD1,central_nervous_system,brain,Substitution - Missense,+1 	.	.
KDM5A	5927	broad.mit.edu	36	12	289373	289373	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001042603	exon22	c.G3235A	p.D1079N	.	.	.
KRT82	3888	broad.mit.edu	36	12	51083819	51083819	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033033	exon2	c.G553A	p.G185R	.	.	.
ZNF385A	25946	broad.mit.edu	36	12	53051751	53051751	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015481	exon4	c.G377C	p.G126A	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53187940	53187940	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184976	exon4	c.T193A	p.C65S	.	.	.
CDCA3	83461	broad.mit.edu	36	12	6828527	6828527	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031299	exon6	c.T748C	p.W250R	.	.	.
GLIPR1	11010	broad.mit.edu	36	12	74161012	74161012	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006851	exon1	c.G85A	p.E29K	.	.	.
EPYC	1833	broad.mit.edu	36	12	89887969	89887969	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004950	exon6	c.C781G	p.R261G	.	.	.
CRADD	8738	broad.mit.edu	36	12	92768051	92768051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003805	exon3	c.C473T	p.S158L	.	.	.
TMTC4	84899	broad.mit.edu	36	13	100119037	100119037	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032813	exon3	c.C16G	p.H6D	.	.	.
NALCN	259232	broad.mit.edu	36	13	100845656	100845656	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052867	exon3	c.C170G	p.T57R	.	.	.
KLHDC1	122773	broad.mit.edu	36	14	49229744	49229745	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172193	exon1	c.82_83insG	p.W28fs	.	.	.
OR4K1	79544	broad.mit.edu	36	14	19474334	19474334	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004063	exon1	c.C669T	p.I223I	.	.	.
DHRS4	10901	broad.mit.edu	36	14	23492858	23492858	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021004	exon1	c.A21T	p.L7L	.	.	.
EIF2B2	8892	broad.mit.edu	36	14	74539762	74539763	+	Missense_Mutation	DNP	CA	GT	GT	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014239	exon2	c.195_196GT	.	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29466274	29466276	+	In_Frame_Del	DEL	GCA	-	-	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	GCA	GCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002742	exon1	c.194_196del	p.65_66del	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52574188	52574188	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080534	exon18	c.T5024G	p.L1675R	.	.	.
ALDH1A2	8854	broad.mit.edu	36	15	56045234	56045234	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170697	exon6	c.T594C	p.I198I	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65266883	65266883	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145103	exon8	c.G1004C	p.G335A	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77126219	77126219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002891	exon5	c.C802T	p.R268C	.	.	.
STX4	6810	broad.mit.edu	36	16	30958589	30958589	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004604	exon10	c.C858T	p.L286L	.	.	.
MYLK3	91807	broad.mit.edu	36	16	45323641	45323641	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182493	exon4	c.A1442G	p.E481G	.	.	.
SLC12A3	6559	broad.mit.edu	36	16	55463854	55463854	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000339	exon7	c.A943G	p.K315E	.	.	.
KIAA0182	23199	broad.mit.edu	36	16	84248442	84248442	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134473	exon7	c.G1059A	p.P353P	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11586285	11586285	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001372	exon30	c.T6041C	p.I2014T	.	.	.
UNC45B	146862	broad.mit.edu	36	17	30515261	30515261	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173167	exon9	c.C1114T	p.R372C	.	.	.
KRT32	3882	broad.mit.edu	36	17	36876967	36876967	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002278	exon1	c.G137T	p.C46F	.	.	.
OR4D1	26689	broad.mit.edu	36	17	53587546	53587546	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012374	exon1	c.G33A	p.M11I	.	.	.
MTMR4	9110	broad.mit.edu	36	17	53924101	53924101	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004687	exon19	c.C3510T	p.Y1170Y	.	.	.
KCNH6	81033	broad.mit.edu	36	17	58961301	58961301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030779	exon3	c.G425A	p.R142H	.	.	.
TP53	7157	broad.mit.edu	36	17	7519234	7519234	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.T421C	p.C141R	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41749481	41749481	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020964	exon20	c.C3686A	p.P1229H	.	.	.
PHLPP1	23239	broad.mit.edu	36	18	58713267	58713267	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194449	exon5	c.G2110C	p.G704R	.	.	.
CDH19	28513	broad.mit.edu	36	18	62386741	62386741	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021153	exon3	c.G382T	p.V128L	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8384505	8384505	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002845	exon30	c.G4201A	p.A1401T	.	.	.
C19orf2	8725	broad.mit.edu	36	19	35193861	35193861	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003796	exon9	c.G1056A	p.K352K	.	.	.
UPK1A	11045	broad.mit.edu	36	19	40856263	40856263	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007000	exon4	c.C444T	p.R148R	.	.	.
ACTN4	81	broad.mit.edu	36	19	43904109	43904109	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004924	exon12	c.C1383T	p.S461S	.	.	.
ZNF285	26974	broad.mit.edu	36	19	49583786	49583786	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152354	exon4	c.A461G	p.N154S	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61627080	61627080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001159860	exon5	c.G1241A	p.R414K	.	.	.
MUC16	94025	broad.mit.edu	36	19	8947657	8947657	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon1	c.A5158C	p.S1720R	.	.	.
UBE4B	10277	broad.mit.edu	36	1	10054851	10054851	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105562	exon2	c.G203A	p.G68D	.	.	.
C1orf103	55791	broad.mit.edu	36	1	111296316	111296316	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018372	exon2	c.T713A	p.V238E	.	.	.
NGF	4803	broad.mit.edu	36	1	115630372	115630372	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002506	exon3	c.C568G	p.R190G	.	.	.
FMO3	2328	broad.mit.edu	36	1	169349966	169349966	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002294	exon7	c.T1023A	p.S341S	.	.	.
TNN	63923	broad.mit.edu	36	1	173334097	173334097	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022093	exon9	c.A1862G	p.D621G	.	.	.
TNR	7143	broad.mit.edu	36	1	173632417	173632417	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003285	exon5	c.G1126T	p.D376Y	.	.	.
RD3	343035	broad.mit.edu	36	1	209719110	209719110	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164688	exon3	c.C479T	p.S160L	.	.	.
TAF5L	27097	broad.mit.edu	36	1	227797202	227797202	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014409	exon5	c.C1235G	p.S412X	.	.	.
EPHA8	2046	broad.mit.edu	36	1	22788041	22788041	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020526	exon5	c.G1070T	p.R357L	.	.	.
RYR2	6262	broad.mit.edu	36	1	235868940	235868940	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001035	exon46	c.G6931A	p.E2311K	.	.	.
FH	2271	broad.mit.edu	36	1	239732447	239732447	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000143	exon8	c.C1155T	p.A385A	.	.	.
CCDC28B	79140	broad.mit.edu	36	1	32442541	32442541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024296	exon4	c.C499T	p.R167C	.	.	.
LRRC47	57470	broad.mit.edu	36	1	3693555	3693555	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020710	exon2	c.C795T	p.G265G	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47055343	47055343	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099772	exon9	c.C1110T	p.C370C	.	.	.
H6PD	9563	broad.mit.edu	36	1	9228155	9228155	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004285	exon2	c.C575G	p.T192S	.	.	.
PIGU	128869	broad.mit.edu	36	20	32636939	32636939	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080476	exon9	c.G889A	p.V297I	.	.	.
SRMS	6725	broad.mit.edu	36	20	61644001	61644001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080823	exon5	c.C905T	p.T302M	.	.	.
USP25	29761	broad.mit.edu	36	21	16060191	16060191	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013396	exon3	c.G128T	p.S43I	.	.	.
CHAF1B	8208	broad.mit.edu	36	21	36688733	36688733	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005441	exon5	c.G396A	p.V132V	.	.	.
KCNJ6	3763	broad.mit.edu	36	21	38008568	38008568	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002240	exon3	c.G762A	p.P254P	.	.	.
PRDM15	63977	broad.mit.edu	36	21	42103630	42103630	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022115	exon28	c.G3699C	p.K1233N	.	.	.
GCAT	23464	broad.mit.edu	36	22	36542253	36542253	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014291	exon8	c.G1087A	p.A363T	.	.	.
DPP10	57628	broad.mit.edu	36	2	116288905	116288905	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178036	exon21	c.T1617A	p.I539I	.	.	.
TFCP2L1	29842	broad.mit.edu	36	2	121705879	121705879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014553	exon13	c.G1334A	p.S445N	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137530546	137530546	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080427	exon2	c.A133C	p.S45R	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141174497	141174497	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018557	exon41	c.A6591C	p.L2197F	.	.	.
RIF1	55183	broad.mit.edu	36	2	152030875	152030875	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001177664	exon30	c.A6595C	p.N2199H	.	.	.
PRPF40A	55660	broad.mit.edu	36	2	153222771	153222771	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017892	exon25	c.G2578T	p.E860X	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167808483	167808483	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199144	exon7	c.T1669C	p.L557L	.	.	.
CHN1	1123	broad.mit.edu	36	2	175419911	175419911	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001822	exon7	c.A570T	p.R190S	.	.	.
TTN	7273	broad.mit.edu	36	2	179133038	179133038	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003319	exon154	c.A58871G	p.N19624S	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196585762	196585762	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018897	exon10	c.T983A	p.L328H	.	.	.
SGOL2	151246	broad.mit.edu	36	2	201146650	201146650	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001160046	exon7	c.A3336T	p.Q1112H	.	.	.
MARCH4	57574	broad.mit.edu	36	2	216942797	216942797	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020814	exon1	c.C432T	p.T144T	.	.	.
FEV	54738	broad.mit.edu	36	2	219557210	219557210	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017521	exon2	c.C114T	p.P38P	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220202563	220202563	+	De_novo_Start_InFrame	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005070	exon5	c.C513T	p.D171D	.	.	.
TSSC1	7260	broad.mit.edu	36	2	3337407	3337407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003310	exon2	c.G47A	p.R16H	.	.	.
C2orf15	150590	broad.mit.edu	36	2	99133484	99133484	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144706	exon4	c.C133G	p.Q45E	.	.	.
AFF3	3899	broad.mit.edu	36	2	99534479	99534479	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025108	exon24	c.C3645T	p.N1215N	.	.	.
AFF3	3899	broad.mit.edu	36	2	99565725	99565725	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001025108	exon16	c.C2835A	p.D945E	.	.	.
NFKBIZ	64332	broad.mit.edu	36	3	103060894	103060894	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005474	exon13	c.C1846T	p.P616S	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131892143	131892143	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014602	exon14	c.C3144G	p.L1048L	.	.	.
FGF12	2257	broad.mit.edu	36	3	193370955	193370955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004113	exon5	c.C413T	p.P138L	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38808628	38808628	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006514	exon2	c.C306A	p.S102S	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47014981	47014981	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015175	exon22	c.T3143A	p.I1048K	.	.	.
RAD54L2	23132	broad.mit.edu	36	3	51672145	51672145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015106	exon22	c.C4073T	p.T1358M	.	.	.
NCAPG	64151	broad.mit.edu	36	4	17439022	17439022	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022346	exon12	c.A1677T	p.K559N	.	.	.
SLC34A2	10568	broad.mit.edu	36	4	25273263	25273263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001177999	exon2	c.G43A	p.D15N	.	.	.
APC	324	broad.mit.edu	36	5	112179160	112179160	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon7	c.C850T	p.R284X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112203406	112203406	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4162T	p.Q1388X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
PCDHB8	56128	broad.mit.edu	36	5	140539143	140539143	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019120	exon1	c.C1344T	p.N448N	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140721919	140721919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018923	exon1	c.G2033A	p.R678H	.	.	.
FBXO38	81545	broad.mit.edu	36	5	147776824	147776824	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205836	exon12	c.C1482A	p.S494S	.	.	.
HNRNPH1	3187	broad.mit.edu	36	5	178977832	178977832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005520	exon6	c.G635A	p.R212K	.	.	.
LRRC14B	389257	broad.mit.edu	36	5	248313	248313	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080478	exon2	c.C1390T	p.R464W	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5371311	5371311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139056	exon22	c.C3476T	p.P1159L	.	.	.
MARVELD2	153562	broad.mit.edu	36	5	68764672	68764672	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001038603	exon5	c.G1499A	p.R500Q	.	.	.
KIAA0408	9729	broad.mit.edu	36	6	127810524	127810524	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014702	exon5	c.T633C	p.H211H	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146304615	146304615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173082	exon10	c.G2327A	p.R776H	.	.	.
SASH1	23328	broad.mit.edu	36	6	148907609	148907609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015278	exon18	c.G3310A	p.E1104K	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152684620	152684620	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033071	exon82	c.T15799A	p.W5267R	.	.	.
CNKSR3	154043	broad.mit.edu	36	6	154791002	154791002	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173515	exon7	c.C681G	p.I227M	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159608875	159608875	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032532	exon22	c.C5496G	p.C1832W	.	.	.
THBS2	7058	broad.mit.edu	36	6	169368304	169368304	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003247	exon17	c.C2434T	p.R812X	.	.	.
E2F3	1871	broad.mit.edu	36	6	20589572	20589572	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001949	exon3	c.T662C	p.I221T	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56137207	56137207	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030820	exon9	c.G1344A	p.P448P	.	.	.
FHL5	9457	broad.mit.edu	36	6	97159446	97159446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001170807	exon3	c.C259T	p.R87C	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129450678	129450678	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016478	exon8	c.G1142C	p.S381T	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151330897	151330897	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145292	exon6	c.C824A	p.T275N	.	.	.
MLL3	58508	broad.mit.edu	36	7	151490560	151490560	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170606	exon43	c.G11035A	p.E3679K	.	.	.
GLI3	2737	broad.mit.edu	36	7	41970885	41970885	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000168	exon15	c.G4311T	p.Q1437H	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86894136	86894136	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018849	exon16	c.C1930G	p.L644V	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116701413	116701413	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014112	exon3	c.C87T	p.G29G	.	.	.
ZNF7	7553	broad.mit.edu	36	8	146038112	146038112	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003416	exon5	c.C816T	p.H272H	.	.	.
TNFRSF10B	8795	broad.mit.edu	36	8	22943081	22943081	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003842	exon4	c.A463G	p.K155E	.	.	.
SULF1	23213	broad.mit.edu	36	8	70704427	70704427	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128205	exon19	c.C2243T	p.T748M	.	.	.
RDH10	157506	broad.mit.edu	36	8	74395782	74395782	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172037	exon4	c.A686G	p.K229R	.	.	.
HEY1	23462	broad.mit.edu	36	8	80839978	80839978	+	Nonstop_Mutation	SNP	T	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012258	exon5	c.A915C	p.X305Y	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93067690	93067690	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198626	exon10	c.C1117T	p.R373X	.	.	.
PALM2-AKAP2	445815	broad.mit.edu	36	9	111745020	111745020	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001037293	exon7	c.A634G	p.S212G	.	.	.
RAB14	51552	broad.mit.edu	36	9	122983633	122983633	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016322	exon8	c.G510C	p.K170N	.	.	.
OR1L6	392390	broad.mit.edu	36	9	124552401	124552401	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004453	exon1	c.A454T	p.I152F	.	.	.
SCAI	286205	broad.mit.edu	36	9	126804119	126804119	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173690	exon13	c.C1159T	p.L387L	.	.	.
SARDH	1757	broad.mit.edu	36	9	135518952	135518952	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007101	exon21	c.G2637A	p.S879S	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137846774	137846774	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015447	exon16	c.C4496A	p.S1499Y	.	.	.
TEK	7010	broad.mit.edu	36	9	27173556	27173556	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000459	exon8	c.T1130C	p.L377P	.	.	.
GLUD2	2747	broad.mit.edu	36	X	120010284	120010284	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012084	exon1	c.T1065C	p.H355H	.	.	.
ZNF280C	55609	broad.mit.edu	36	X	129192341	129192341	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017666	exon9	c.T813A	p.I271I	.	.	.
CLIC2	1193	broad.mit.edu	36	X	154181307	154181307	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AG-A036-01A-12W-A096-10	TCGA-AG-A036-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001289	exon3	c.C278G	p.T93S	.	.	.