Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
RAD17	0	genome.wustl.edu	37	5	68692375	68692376	+	Splice_Site	INS	-	-	A			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	5	68692375	68692376	-	A	INS	RAD17	ENST00000380774	human	ensembl	74_37	+1	known	splice_site_ins	c.1605+2_1605+1	e13+2	1.000:0.992	-	-	-	no_errors	RAD17	HGNC	ENSG00000152942	tier1			13	0	0.00	15	11	42.31						
NRG2	0	genome.wustl.edu	37	5	139228073	139228078	+	In_Frame_Del	DEL	CCGGGT	CCGGGT	-			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	CCGGGT	CCGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	5	139228073	139228078	CCGGGT	-	DEL	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	in_frame_del	c.1988_1983	p.GP665in_frame_del	0.243:0.240:0.236:0.085:0.074:0.062	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458	tier1														
TNFAIP6	0	genome.wustl.edu	37	2	152236046	152236046	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	2	152236046	152236046	A	-	DEL	TNFAIP6	ENST00000243347	human	ensembl	74_37	+1	known	frame_shift_del	c.833	p.*278fs	0.961	NULL	pfam_CUB_dom,pfam_Link,superfamily_CUB_dom,superfamily_C-type_lectin_fold,smart_Link,smart_CUB_dom,pfscan_CUB_dom,pfscan_Link,prints_Link	-	no_errors	TNFAIP6	HGNC	ENSG00000123610	tier1			9	0	0.00	24	5	17.24						
ENSG00000267801	0	genome.wustl.edu	37	17	73872969	73872970	+	R	INS	-	-	G			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	17	73872969	73872970	-	G	INS	ENSG00000267801	ENST00000586076	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	RP11-552F3.9	Clone_based_vega_gene	ENSG00000267801	tier1			13	0	0.00	11	9	45.00						
RXRA	0	genome.wustl.edu	37	9	137331938	137331938	+	R	DEL	A	A	-			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	9	137331938	137331938	A	-	DEL	RXRA	ENST00000356384	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350	tier1			33	0	0.00	26	5	16.13						
NEURL4	0	genome.wustl.edu	37	17	7228218	7228218	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	17	7228218	7228218	G	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.1713	p.D571E	1.000	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	tier1	-	-	41	0	0.00	54	5	8.47						
EMR1	0	genome.wustl.edu	37	19	6916370	6916370	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	19	6916370	6916370	G	C	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.1411	p.E471Q	0.005	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837	tier1	-	-	32	0	0.00	89	10	10.10						
MIR510	0	genome.wustl.edu	37	X	146353918	146353918	+	R	SNP	G	G	T			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	X	146353918	146353918	G	T	SNP	MIR510	ENST00000384909	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR510	HGNC	ENSG00000207641	tier1	-	-	17	0	0.00	30	5	14.29						
OR7D4	0	genome.wustl.edu	37	19	9325248	9325248	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	19	9325248	9325248	C	T	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.266	p.S89N	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	tier1	-	-	51	0	0.00	113	15	11.72						
FAM153C	0	genome.wustl.edu	37	5	177457621	177457621	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	5	177457621	177457621	G	A	SNP	FAM153C	ENST00000511189	human	ensembl	74_37	+1	novel	missense	c.28	p.E10K	0.000	NULL	prints_FAM153	-	no_errors	FAM153C	HGNC	ENSG00000204677	tier1	-	-	51	0	0.00	118	11	8.53						
VAPB	0	genome.wustl.edu	37	20	57020740	57020741	+	R	INS	-	-	TGTG			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	20	57020740	57020741	-	TGTG	INS	VAPB	ENST00000265619	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	VAPB	HGNC	ENSG00000124164	tier1			9	0	0.00	29	5	14.71						
DUSP10	0	genome.wustl.edu	37	1	221875156	221875157	+	R	INS	-	-	A			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	1	221875156	221875157	-	A	INS	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507	tier1			17	0	0.00	21	4	16.00						
SMG6	0	genome.wustl.edu	37	17	1964759	1964760	+	R	INS	-	-	G			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	17	1964759	1964760	-	G	INS	SMG6	ENST00000570756	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.024:0.027	-	-	-	no_errors	SMG6	HGNC	ENSG00000070366	tier1			44	0	0.00	61	14	18.67						
TROVE2	0	genome.wustl.edu	37	1	193053996	193053997	+	R	INS	-	-	A			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	1	193053996	193053997	-	A	INS	TROVE2	ENST00000460715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TROVE2	HGNC	ENSG00000116747	tier1			23	0	0.00	37	6	13.95						
RCVRN	0	genome.wustl.edu	37	17	9801316	9801317	+	R	INS	-	-	GTGTGTGTGC			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	17	9801316	9801317	-	GTGTGTGTGC	INS	RCVRN	ENST00000570909	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RCVRN	HGNC	ENSG00000109047	tier1														
ENSG00000216127	0	genome.wustl.edu	37	5	171866699	171866704	+	R	DEL	CACACA	CACACA	-			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	CACACA	CACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	5	171866699	171866704	CACACA	-	DEL	ENSG00000216127	ENST00000401308	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.001:0.000	-	-	-	no_errors	AC011407.1	Clone_based_ensembl_gene	ENSG00000216127	tier1														
ZSWIM4	0	genome.wustl.edu	37	19	13919958	13919958	+	Silent	SNP	G	G	A			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	19	13919958	13919958	G	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	74_37	+1	known	silent	c.936	p.Q312	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003	tier1	-	-	47	0	0.00	91	18	16.51						
ENSG00000221395	0	genome.wustl.edu	37	16	82875704	82875747	+	R	DEL	TATATATATATATGTATATATATATATATATATATATATACACA	TATATATATATATGTATATATATATATATATATATATATACACA	-			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	TATATATATATATGTATATATATATATATATATATATATACACA	TATATATATATATGTATATATATATATATATATATATATACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	16	82875704	82875747	TATATATATATATGTATATATATATATATATATATATATACACA	-	DEL	ENSG00000221395	ENST00000408468	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.008:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.000:0.001:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.003:0.004:0.008:0.010:0.010:0.011:0.010:0.008:0.008:0.004:0.003:0.002:0.004	-	-	-	no_errors	AC099506.1	Clone_based_ensembl_gene	ENSG00000221395	tier1														
ENSG00000265209	0	genome.wustl.edu	37	16	57908380	57908381	+	R	INS	-	-	A			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	16	57908380	57908381	-	A	INS	ENSG00000265209	ENST00000580935	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC010543.1	Clone_based_ensembl_gene	ENSG00000265209	tier1			12	0	0.00	32	5	13.51						
OR7D4	0	genome.wustl.edu	37	19	9324756	9324756	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	19	9324756	9324756	C	T	SNP	OR7D4	ENST00000308682	human	ensembl	74_37	-1	known	missense	c.758	p.G253E	0.295	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D4	HGNC	ENSG00000174667	tier1	-	-	38	0	0.00	129	18	12.24						
UFL1	0	genome.wustl.edu	37	6	96969559	96969578	+	R	DEL	AACCCCCAGCGCCGCGGTAC	AACCCCCAGCGCCGCGGTAC	-			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	AACCCCCAGCGCCGCGGTAC	AACCCCCAGCGCCGCGGTAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	6	96969559	96969578	AACCCCCAGCGCCGCGGTAC	-	DEL	UFL1	ENST00000461673	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.001:0.001:0.003:0.006:0.006:0.002:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	UFL1	HGNC	ENSG00000014123	tier1														
IRF2BPL	0	genome.wustl.edu	37	14	77493780	77493794	+	In_Frame_Del	DEL	TGCTGCTGCTGCTGT	TGCTGCTGCTGCTGT	-			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	TGCTGCTGCTGCTGT	TGCTGCTGCTGCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	14	77493780	77493794	TGCTGCTGCTGCTGT	-	DEL	IRF2BPL	ENST00000238647	human	ensembl	74_37	-1	known	in_frame_del	c.356_342	p.QQQQQ118in_frame_del	0.967:0.974:0.967:0.993:0.991:0.990:1.000:1.000:1.000:0.997:0.987:0.121:0.050:0.052:0.060	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BPL	HGNC	ENSG00000119669	tier1														
FAT3	0	genome.wustl.edu	37	11	92616273	92616273	+	Silent	SNP	C	C	T			TCGA-3B-A9HJ-01A-11D-A387-09	TCGA-3B-A9HJ-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq 2500	18382739-a33f-49e6-856f-fcf720c49363	dd637e7a-2892-4bd4-b8ad-ef88f676791d	11	92616273	92616273	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.12651	p.D4217	0.001	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	-	-	40	0	0.00	90	8	8.16