Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
ARSK	0	genome.wustl.edu	37	5	94927274	94927274	+	Silent	SNP	C	C	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	5	94927274	94927274	C	T	SNP	ARSK	ENST00000380009	human	ensembl	74_37	+1	known	silent	c.1041	p.A347	0.970	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291	tier1	rs140272875	-	57	0	0.00	50	30	37.50	83	0	0.00	89	70	44.03
TTC40	0	genome.wustl.edu	37	10	134663926	134663926	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	10	134663926	134663926	G	A	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	missense	c.257	p.T86M	0.001	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	tier1	-	-	152	0	0.00	41	37	47.44	81	0	0.00	29	23	44.23
ETV5	0	genome.wustl.edu	37	3	185823486	185823486	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	3	185823486	185823486	C	A	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	nonsense	c.187	p.E63*	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405	tier1	-	-	91	0	0.00	46	41	47.13	103	0	0.00	36	59	62.11
RP1	0	genome.wustl.edu	37	8	55539286	55539286	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	8	55539286	55539286	C	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.2844	p.S948R	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	tier1	-	-	93	0	0.00	51	44	46.32	106	0	0.00	74	41	35.65
TBCB	0	genome.wustl.edu	37	19	36606551	36606551	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	19	36606551	36606551	G	A	SNP	TBCB	ENST00000221855	human	ensembl	74_37	+1	known	missense	c.89	p.R30H	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	TBCB	HGNC	ENSG00000105254	tier1	-	-	72	0	0.00	17	12	41.38	25	0	0.00	13	9	40.91
GRIA1	0	genome.wustl.edu	37	5	152873493	152873493	+	Missense_Mutation	SNP	T	T	G			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	5	152873493	152873493	T	G	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.118	p.L40V	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	tier1	-	-	26	0	0.00	44	9	16.98	35	0	0.00	43	12	21.82
ZNF630	0	genome.wustl.edu	37	X	47920220	47920220	+	Silent	SNP	G	G	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	X	47920220	47920220	G	T	SNP	ZNF630	ENST00000409324	human	ensembl	74_37	-1	known	silent	c.120	p.T40	0.052	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994	tier1	-	-	43	0	0.00	34	20	37.04	45	0	0.00	44	26	37.14
OC90	0	genome.wustl.edu	37	8	133045354	133045354	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	8	133045354	133045354	G	A	SNP	OC90	ENST00000443356	human	ensembl	74_37	-1	known	missense	c.839	p.A280V	0.001	NULL	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	OC90	Uniprot_gn	ENSG00000258417	tier1	-	-	16	0	0.00	17	14	45.16	22	0	0.00	28	16	36.36
FCRL2	0	genome.wustl.edu	37	1	157738333	157738333	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	1	157738333	157738333	T	A	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	missense	c.754	p.T252S	0.002	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704	tier1	-	-	43	0	0.00	24	19	44.19	50	0	0.00	46	40	46.51
SDK1	0	genome.wustl.edu	37	7	3681652	3681652	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	7	3681652	3681652	C	A	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.628	p.L210I	0.967	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555	tier1	-	-	89	0	0.00	60	13	17.81	111	0	0.00	76	19	20.00
ASPN	0	genome.wustl.edu	37	9	95237014	95237014	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	9	95237014	95237014	G	A	SNP	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	missense	c.166	p.L56F	1.000	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819	tier1	-	-	30	0	0.00	18	15	45.45	29	0	0.00	18	17	47.22
UBE3C	0	genome.wustl.edu	37	7	157000591	157000591	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	7	157000591	157000591	A	C	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	missense	c.1771	p.I591L	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	tier1	-	-	17	0	0.00	11	6	35.29	32	0	0.00	21	16	43.24
TBC1D5	0	genome.wustl.edu	37	3	17208291	17208291	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	3	17208291	17208291	G	T	SNP	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	missense	c.2062	p.Q688K	0.001	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	tier1	-	-	59	0	0.00	51	11	17.74	27	0	0.00	41	7	14.58
TP53	0	genome.wustl.edu	37	17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	17	7578268	7578268	A	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.581	p.L194R	0.996	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	89	0	0.00	43	37	46.25	141	0	0.00	56	49	46.67
ZFAS1	0	genome.wustl.edu	37	20	47895195	47895195	+	R	SNP	G	G	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	20	47895195	47895195	G	T	SNP	ZFAS1	ENST00000326677	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZFAS1	HGNC	ENSG00000177410	tier1	-	-	57	0	0.00	26	17	39.53	104	1	0.95	38	39	50.65
NTRK1	0	genome.wustl.edu	37	1	156843634	156843634	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	1	156843634	156843634	G	A	SNP	NTRK1	ENST00000524377	human	ensembl	74_37	+1	known	missense	c.1060	p.V354I	1.000	prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Cys-rich_flank_reg_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_neurotrophic_rcpt_1,prints_Tyr_kinase_NGF_rcpt	-	no_errors	NTRK1	HGNC	ENSG00000198400	tier1	rs201035170	GMAF=0	144	0	0.00	33	26	44.07	95	0	0.00	36	37	50.00
SHISA3	0	genome.wustl.edu	37	4	42403180	42403180	+	Silent	SNP	A	A	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	4	42403180	42403180	A	C	SNP	SHISA3	ENST00000319234	human	ensembl	74_37	+1	known	silent	c.429	p.T143	0.574	NULL	NULL	-	no_errors	SHISA3	HGNC	ENSG00000178343	tier1	-	-	50	0	0.00	38	6	13.64	77	0	0.00	52	14	21.21
ACSF3	0	genome.wustl.edu	37	16	89187269	89187269	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	16	89187269	89187269	G	A	SNP	ACSF3	ENST00000317447	human	ensembl	74_37	+1	known	missense	c.1187	p.R396K	0.004	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF3	HGNC	ENSG00000176715	tier1	-	-	90	0	0.00	33	21	38.89	99	0	0.00	80	31	27.93
TP53	0	genome.wustl.edu	37	17	7578177	7578177	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	17	7578177	7578177	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.672	p.E224D	1.000	pfam_p53_D-bd,superfamily_p53-like_TF_D-bd,prints_p53_tumour_suppressor	pfam_p53_D-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_D-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	93	0	0.00	56	37	39.78	136	0	0.00	59	55	48.25
UGT3A1	0	genome.wustl.edu	37	5	35957294	35957294	+	Silent	SNP	G	G	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	5	35957294	35957294	G	C	SNP	UGT3A1	ENST00000274278	human	ensembl	74_37	-1	known	silent	c.1071	p.L357	0.917	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A1	HGNC	ENSG00000145626	tier1	-	-	48	0	0.00	32	18	36.00	56	0	0.00	45	35	43.21
TIAM1	0	genome.wustl.edu	37	21	32638611	32638611	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	21	32638611	32638611	A	C	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.678	p.C226W	0.997	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	tier1	-	-	20	0	0.00	12	5	29.41	43	0	0.00	31	14	31.11
C14orf119	0	genome.wustl.edu	37	14	23567055	23567055	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	14	23567055	23567055	C	G	SNP	C14orf119	ENST00000319074	human	ensembl	74_37	+1	known	missense	c.188	p.A63G	0.937	NULL	NULL	-	no_errors	C14orf119	HGNC	ENSG00000179933	tier1	-	-	22	0	0.00	23	26	53.06	79	0	0.00	61	52	45.61
ALOX12	0	genome.wustl.edu	37	17	6913399	6913399	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	17	6913399	6913399	T	A	SNP	ALOX12	ENST00000251535	human	ensembl	74_37	+1	known	missense	c.1766	p.L589H	1.000	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_mml	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX12	HGNC	ENSG00000108839	tier1	-	-	30	0	0.00	14	13	48.15	41	0	0.00	24	20	43.48
FLJ46361	0	genome.wustl.edu	37	10	124558336	124558336	+	R	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	10	124558336	124558336	G	A	SNP	FLJ46361	ENST00000605982	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.982	-	-	-	no_errors	RP11-318C4.2	Clone_based_vega_gene	ENSG00000176584	tier1	rs181772888	GMAF=0.0005	44	0	0.00	39	9	18.75	85	0	0.00	73	30	29.13
SDK1	0	genome.wustl.edu	37	7	3681632	3681632	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	7	3681632	3681632	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.608	p.S203F	0.613	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555	tier1	-	-	86	0	0.00	57	16	21.92	116	0	0.00	83	20	19.42
RG2	0	genome.wustl.edu	37	15	60741046	60741046	+	Splice_Site	SNP	C	C	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	15	60741046	60741046	C	T	SNP	RG2	ENST00000261520	human	ensembl	74_37	-1	known	splice_site	c.2119+1	e9+1	1.000	-	-	-	no_errors	RG2	HGNC	ENSG00000128915	tier1	-	-	69	0	0.00	47	16	25.40	59	0	0.00	30	22	42.31
COL11A2	0	genome.wustl.edu	37	6	33145927	33145927	+	Silent	SNP	A	A	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	6	33145927	33145927	A	T	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.1854	p.P618	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	-	-	72	0	0.00	49	15	23.44	59	0	0.00	80	28	25.93
PREX1	0	genome.wustl.edu	37	20	47274767	47274767	+	Splice_Site	SNP	C	C	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	20	47274767	47274767	C	A	SNP	PREX1	ENST00000371941	human	ensembl	74_37	-1	known	splice_site	c.1882-1	e17-1	1.000	-	-	-	no_errors	PREX1	HGNC	ENSG00000124126	tier1	-	-	38	0	0.00	28	4	12.50	81	0	0.00	53	10	15.87
NBEAL1	0	genome.wustl.edu	37	2	203880879	203880882	+	R	DEL	ATTT	ATTT	-			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	ATTT	ATTT	ATTT	-	ATTT	ATTT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	2	203880879	203880882	ATTT	-	DEL	NBEAL1	ENST00000478884	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.540:0.499:0.269:0.151	-	-	-	no_errors	NBEAL1	HGNC	ENSG00000144426	tier1			18	0	0.00	10	6	37.50	121	0	0.00	40	12	23.08
ZNF48	0	genome.wustl.edu	37	16	30410334	30410339	+	In_Frame_Del	DEL	AGCACC	AGCACC	-			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	AGCACC	AGCACC	AGCACC	-	AGCACC	AGCACC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	16	30410334	30410339	AGCACC	-	DEL	ZNF48	ENST00000320159	human	ensembl	74_37	+1	known	in_frame_del	c.1763_1768	p.HQ589in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	tier1			104	0	0.00	49	28	36.36	104	0	0.00	49	28	36.36
ADAD1	0	genome.wustl.edu	37	4	123336640	123336643	+	Frame_Shift_Del	DEL	TCAT	TCAT	-			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	TCAT	TCAT	TCAT	-	TCAT	TCAT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	4	123336640	123336643	TCAT	-	DEL	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	frame_shift_del	c.1356_1359	p.H453fs	0.990:0.786:0.774:0.473	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsR-bd_dom,smart_dsR-bd_dom,smart_A_deamin,pfscan_dsR-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113	tier1			62	0	0.00	40	28	41.18	55	0	0.00	46	18	28.12
HIST1H1C	0	genome.wustl.edu	37	6	26056568	26056568	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	6	26056568	26056568	C	-	DEL	HIST1H1C	ENST00000343677	human	ensembl	74_37	-1	known	frame_shift_del	c.89	p.G30fs	0.993	prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1C	HGNC	ENSG00000187837	tier1			108	0	0.00	59	49	45.37	33	0	0.00	22	27	55.10
ADAM7	0	genome.wustl.edu	37	8	24339813	24339813	+	Silent	SNP	T	T	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	8	24339813	24339813	T	C	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	silent	c.864	p.V288	0.003	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206	tier1	-	-	61	0	0.00	4	50	92.59	43	0	0.00	3	42	93.33
DH2	0	genome.wustl.edu	37	17	7727575	7727575	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	17	7727575	7727575	G	A	SNP	DH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.11615	p.G3872D	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DH2	HGNC	ENSG00000183914	tier1	-	-	27	0	0.00	11	5	31.25	11	0	0.00	4	3	42.86
FOXN3	0	genome.wustl.edu	37	14	89878531	89878531	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	14	89878531	89878531	G	A	SNP	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	missense	c.290	p.S97F	0.998	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254	tier1	-	-	25	0	0.00	2	7	77.78	10	0	0.00	0	13	100.00
HLA-V	0	genome.wustl.edu	37	6	29760667	29760667	+	R	SNP	G	G	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	6	29760667	29760667	G	T	SNP	HLA-V	ENST00000446817	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	HLA-V	HGNC	ENSG00000181126	tier1	-	-	14	0	0.00	2	6	75.00	34	0	0.00	7	19	73.08
TIMM44	0	genome.wustl.edu	37	19	7998995	7998995	+	Silent	SNP	C	C	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	19	7998995	7998995	C	T	SNP	TIMM44	ENST00000270538	human	ensembl	74_37	-1	known	silent	c.522	p.A174	0.004	pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-like_dom,smart_Tim44-like_dom,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980	tier1	-	-	68	0	0.00	13	13	50.00	26	0	0.00	5	5	50.00
ZFX	0	genome.wustl.edu	37	X	24227114	24227114	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	X	24227114	24227114	A	C	SNP	ZFX	ENST00000540034	human	ensembl	74_37	+1	known	missense	c.1308	p.K436N	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	tier1	-	-	80	0	0.00	46	42	47.73	8	0	0.00	7	5	41.67
AMPD1	0	genome.wustl.edu	37	1	115215870	115215870	+	Silent	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	1	115215870	115215870	G	A	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	silent	c.2208	p.D736	0.000	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	tier1	-	-	72	0	0.00	75	7	8.54	120	0	0.00	96	6	5.88
CRELD2	0	genome.wustl.edu	37	22	50315953	50315953	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	22	50315953	50315953	G	A	SNP	CRELD2	ENST00000404488	human	ensembl	74_37	+1	known	missense	c.601	p.G201S	0.000	superfamily_Growth_fac_rcpt_N_dom	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164	tier1	-	-	71	0	0.00	51	19	27.14	102	0	0.00	80	4	4.76
GPR111	0	genome.wustl.edu	37	6	47650127	47650127	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	6	47650127	47650127	C	A	SNP	GPR111	ENST00000296862	human	ensembl	74_37	+1	known	missense	c.1832	p.A611D	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR111	HGNC	ENSG00000164393	tier1	rs199531842	-	14	0	0.00	33	7	17.50	56	0	0.00	93	4	4.12
WIF1	0	genome.wustl.edu	37	12	65471568	65471568	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	12	65471568	65471568	C	T	SNP	WIF1	ENST00000286574	human	ensembl	74_37	-1	known	missense	c.355	p.V119I	0.956	pfam_WIF,smart_WIF,pfscan_WIF,prints_Wnt-inh	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	tier1	-	-	16	0	0.00	37	29	43.94	33	1	2.94	52	62	53.91
AP3B2	0	genome.wustl.edu	37	15	83349336	83349336	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	15	83349336	83349336	T	C	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	missense	c.943	p.S315G	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723	tier1	-	-	41	0	0.00	6	3	33.33	10	0	0.00	7	0	0.00
TTC40	0	genome.wustl.edu	37	10	134660691	134660691	+	Silent	SNP	C	C	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	10	134660691	134660691	C	T	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	silent	c.570	p.K190	0.997	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	tier1	-	-	95	0	0.00	39	6	13.33	5	0	0.00	2	0	0.00
PLIN1	0	genome.wustl.edu	37	15	90208828	90208828	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	15	90208828	90208828	G	T	SNP	PLIN1	ENST00000300055	human	ensembl	74_37	-1	known	missense	c.1555	p.R519S	1.000	NULL	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN1	HGNC	ENSG00000166819	tier1	-	-	26	0	0.00	7	3	30.00	3	0	0.00	4	0	0.00
PSMC6	0	genome.wustl.edu	37	14	53176455	53176455	+	R	DEL	T	T	-			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	14	53176455	53176455	T	-	DEL	PSMC6	ENST00000554952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.141	-	-	-	no_errors	PSMC6	HGNC	ENSG00000100519	tier1			11	0	0.00	7	3	30.00	0	0	0.00	0	0	0.00
TTC30B	0	genome.wustl.edu	37	2	178417356	178417356	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	2	178417356	178417356	C	T	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.136	p.A46T	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659	tier1	-	-	104	0	0.00	32	29	47.54	2	0	0.00	0	1	100.00
FLAD1	0	genome.wustl.edu	37	1	154965395	154965395	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	1	154965395	154965395	G	T	SNP	FLAD1	ENST00000368428	human	ensembl	74_37	+1	putative	missense	c.269	p.S90I	1.000	pfam_PAPS_reduct	pfam_PAPS_reduct	-	no_errors	FLAD1	HGNC	ENSG00000160688	tier1	-	-	31	0	0.00	34	5	12.82	51	0	0.00	66	2	2.94
USH1C	0	genome.wustl.edu	37	11	17538062	17538062	+	R	SNP	G	G	T			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	11	17538062	17538062	G	T	SNP	USH1C	ENST00000529563	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	USH1C	HGNC	ENSG00000006611	tier1	-	-	17	0	0.00	18	4	18.18	33	0	0.00	40	2	4.76
MUC16	0	genome.wustl.edu	37	19	9084380	9084397	+	In_Frame_Del	DEL	CCATGGTGCTGAAAGTTC	CCATGGTGCTGAAAGTTC	-			TCGA-3B-A9HV-01A-11D-A38Z-09	TCGA-3B-A9HV-10A-01D-A38Z-09	CCATGGTGCTGAAAGTTC	CCATGGTGCTGAAAGTTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6e3a9307-4a27-4bd1-8c70-7dca0b907ebc	c7eb9676-9cbf-4977-8a8e-8eaaf7d01533	19	9084380	9084397	CCATGGTGCTGAAAGTTC	-	DEL	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	in_frame_del	c.7435_7418	p.RTFSTMV2473in_frame_delI	0.086:0.087:0.086:0.095:0.103:0.108:0.112:0.114:0.114:0.112:0.109:0.104:0.098:0.089:0.079:0.066:0.051:0.033	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1			38	0	0.00	46	2	4.17	38	0	0.00	46	2	4.17