Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	 ensembl_gene_id	tier	dbSNP	GMAF	n_ref_count	n_alt_count	normal_vaf	t_ref_count	t_alt_count	tumor_vaf	n_ref_count_val	n_alt_count_val	normal_vaf_val	t_ref_count_val	t_alt_count_val	tumor_vaf_val
PACRG	0	genome.wustl.edu	37	6	163483279	163483279	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	6	163483279	163483279	G	T	SNP	PACRG	ENST00000337019	human	ensembl	74_37	+1	known	missense	c.389	p.G130V	1.000	pfam_Parkin_co-regulated_protein,superfamily_ARM-type_fold	pfam_Parkin_co-regulated_protein,superfamily_ARM-type_fold	-	no_errors	PACRG	HGNC	ENSG00000112530	tier1	-	-	47	0	0.00	17	5	22.73	106	0	0.00	58	24	29.27
INTS1	0	genome.wustl.edu	37	7	1538144	1538144	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	7	1538144	1538144	C	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	missense	c.1713	p.K571N	1.000	NULL	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880	tier1	-	-	80	0	0.00	47	5	9.62	93	0	0.00	102	12	10.53
GOLGB1	0	genome.wustl.edu	37	3	121413302	121413302	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	3	121413302	121413302	T	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.6053	p.Q2018L	1.000	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230	tier1	-	-	14	0	0.00	4	7	63.64	90	0	0.00	83	14	14.43
NPTXR	0	genome.wustl.edu	37	22	39222586	39222586	+	Silent	SNP	G	G	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	22	39222586	39222586	G	A	SNP	NPTXR	ENST00000333039	human	ensembl	74_37	-1	known	silent	c.1017	p.S339	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTXR	HGNC	ENSG00000221890	tier1	-	-	75	0	0.00	39	11	22.00	34	0	0.00	17	3	15.00
ENSG00000237234	0	genome.wustl.edu	37	6	112476928	112476928	+	R	SNP	G	G	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	6	112476928	112476928	G	T	SNP	ENSG00000237234	ENST00000588689	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-142L7.5	Clone_based_vega_gene	ENSG00000237234	tier1	-	-	59	0	0.00	25	7	21.88	117	0	0.00	118	27	18.62
ANHX	0	genome.wustl.edu	37	12	133803696	133803696	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	12	133803696	133803696	A	G	SNP	ANHX	ENST00000419717	human	ensembl	74_37	-1	known	missense	c.544	p.Y182H	0.746	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ANHX	HGNC	ENSG00000227059	tier1	-	-	99	0	0.00	40	36	47.37	75	0	0.00	51	41	44.57
FOXRED2	0	genome.wustl.edu	37	22	36894076	36894076	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	22	36894076	36894076	C	G	SNP	FOXRED2	ENST00000216187	human	ensembl	74_37	-1	known	missense	c.1344	p.Q448H	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/D	-	no_errors	FOXRED2	HGNC	ENSG00000100350	tier1	-	-	127	0	0.00	53	22	29.33	82	0	0.00	48	11	18.64
DMXL1	0	genome.wustl.edu	37	5	118533525	118533525	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	5	118533525	118533525	G	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.7619	p.R2540Q	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869	tier1	-	-	99	0	0.00	77	17	18.09	129	0	0.00	122	29	19.21
SOX6	0	genome.wustl.edu	37	11	16119196	16119196	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	11	16119196	16119196	C	A	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.937	p.A313S	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693	tier1	-	-	55	0	0.00	27	7	20.59	92	1	1.08	61	20	24.69
SEMA4G	0	genome.wustl.edu	37	10	102744515	102744515	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	10	102744515	102744515	T	A	SNP	SEMA4G	ENST00000517724	human	ensembl	74_37	+1	putative	nonsense	c.1974	p.C658*	0.005	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4G	HGNC	ENSG00000095539	tier1	-	-	34	0	0.00	23	9	28.12	92	0	0.00	74	31	29.52
SIDT2	0	genome.wustl.edu	37	11	117064673	117064673	+	Silent	SNP	C	C	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	11	117064673	117064673	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	74_37	+1	known	silent	c.2379	p.T793	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577	tier1	-	-	25	0	0.00	8	9	52.94	50	0	0.00	30	19	38.78
ZNF879	0	genome.wustl.edu	37	5	178459892	178459892	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	5	178459892	178459892	C	A	SNP	ZNF879	ENST00000444149	human	ensembl	74_37	+1	known	missense	c.943	p.P315T	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF879	HGNC	ENSG00000234284	tier1	-	-	56	0	0.00	58	16	21.62	55	0	0.00	103	14	11.97
USP28	0	genome.wustl.edu	37	11	113711441	113711441	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	11	113711441	113711441	T	G	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.413	p.K138T	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028	tier1	-	-	61	0	0.00	33	16	32.65	109	0	0.00	80	43	34.96
GLU	0	genome.wustl.edu	37	17	40695606	40695606	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	17	40695606	40695606	A	G	SNP	GLU	ENST00000225927	human	ensembl	74_37	+1	known	missense	c.1582	p.S528G	0.010	pfam_GLU_tim-barrel	pfam_GLU_tim-barrel,superfamily_Glycoside_hydrolase_SF	-	no_errors	GLU	HGNC	ENSG00000108784	tier1	-	-	42	0	0.00	20	5	20.00	62	0	0.00	30	13	30.23
RASGEF1C	0	genome.wustl.edu	37	5	179542375	179542375	+	R	SNP	C	C	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	5	179542375	179542375	C	A	SNP	RASGEF1C	ENST00000519456	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	tier1	-	-	34	0	0.00	42	6	12.50	65	0	0.00	116	17	12.69
FANCM	0	genome.wustl.edu	37	14	45633722	45633722	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	14	45633722	45633722	G	C	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.1742	p.R581P	1.000	superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_D/R_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	tier1	-	-	91	0	0.00	84	25	22.94	129	0	0.00	118	30	20.27
ZNF512	0	genome.wustl.edu	37	2	27822468	27822468	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	2	27822468	27822468	C	G	SNP	ZNF512	ENST00000355467	human	ensembl	74_37	+1	known	missense	c.296	p.A99G	0.235	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943	tier1	-	-	97	0	0.00	39	10	20.41	124	0	0.00	70	14	16.47
DPYSL5	0	genome.wustl.edu	37	2	27167529	27167529	+	Silent	SNP	A	A	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	2	27167529	27167529	A	G	SNP	DPYSL5	ENST00000288699	human	ensembl	74_37	+1	known	silent	c.1446	p.L482	0.995	superfamily_Metal-dep_hydrolase_composite	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL5	HGNC	ENSG00000157851	tier1	-	-	95	0	0.00	37	15	28.85	58	0	0.00	44	14	24.14
ZC3H15	0	genome.wustl.edu	37	2	187370520	187370520	+	Silent	SNP	T	T	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	2	187370520	187370520	T	C	SNP	ZC3H15	ENST00000337859	human	ensembl	74_37	+1	known	silent	c.918	p.D306	0.998	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H15	HGNC	ENSG00000065548	tier1	-	-	87	0	0.00	42	25	37.31	111	0	0.00	73	24	24.74
MOV10L1	0	genome.wustl.edu	37	22	50558966	50558966	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	22	50558966	50558966	A	G	SNP	MOV10L1	ENST00000262794	human	ensembl	74_37	+1	known	missense	c.1490	p.Q497R	0.868	NULL	superfamily_P-loop_NTPase,superfamily_-bd_OB-fold	-	no_errors	MOV10L1	HGNC	ENSG00000073146	tier1	-	-	100	0	0.00	38	16	29.63	163	0	0.00	110	37	25.17
GATA1	0	genome.wustl.edu	37	X	48651599	48651599	+	Silent	SNP	T	T	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	X	48651599	48651599	T	C	SNP	GATA1	ENST00000376670	human	ensembl	74_37	+1	known	silent	c.765	p.G255	0.957	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA1	HGNC	ENSG00000102145	tier1	-	-	86	0	0.00	37	7	15.91	69	1	1.43	47	22	31.88
TOR1A	0	genome.wustl.edu	37	9	132580862	132580862	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	9	132580862	132580862	C	T	SNP	TOR1A	ENST00000351698	human	ensembl	74_37	-1	known	missense	c.685	p.E229K	1.000	superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1A	HGNC	ENSG00000136827	tier1	-	-	92	0	0.00	51	23	31.08	112	0	0.00	79	42	34.71
CYP4F11	0	genome.wustl.edu	37	19	16024597	16024597	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	19	16024597	16024597	C	T	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	missense	c.1520	p.R507H	0.800	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903	tier1	-	-	79	0	0.00	27	12	30.77	39	0	0.00	33	10	23.26
FBLN2	0	genome.wustl.edu	37	3	13611824	13611824	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	3	13611824	13611824	G	C	SNP	FBLN2	ENST00000535798	human	ensembl	74_37	+1	known	missense	c.47	p.R16T	0.004	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	tier1	-	-	35	0	0.00	19	6	24.00	96	0	0.00	66	24	26.37
STT3A	0	genome.wustl.edu	37	11	125472725	125472725	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	11	125472725	125472725	A	C	SNP	STT3A	ENST00000392708	human	ensembl	74_37	+1	known	missense	c.299	p.Y100S	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3A	HGNC	ENSG00000134910	tier1	-	-	59	0	0.00	32	8	20.00	83	0	0.00	75	26	25.74
LZTR1	0	genome.wustl.edu	37	22	21336825	21336825	+	Silent	SNP	G	G	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	22	21336825	21336825	G	C	SNP	LZTR1	ENST00000215739	human	ensembl	74_37	+1	known	silent	c.165	p.R55	0.999	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_Kelch_1,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	LZTR1	HGNC	ENSG00000099949	tier1	-	-	141	0	0.00	76	24	24.00	51	0	0.00	25	15	37.50
CPT2	0	genome.wustl.edu	37	1	53668131	53668131	+	R	SNP	C	C	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	1	53668131	53668131	C	A	SNP	CPT2	ENST00000468572	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CPT2	HGNC	ENSG00000157184	tier1	-	-	75	0	0.00	20	7	25.93	109	0	0.00	68	19	21.84
SEC24A	0	genome.wustl.edu	37	5	134050773	134050773	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	5	134050773	134050773	A	T	SNP	SEC24A	ENST00000398844	human	ensembl	74_37	+1	known	missense	c.2787	p.Q929H	1.000	pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom	-	no_errors	SEC24A	HGNC	ENSG00000113615	tier1	-	-	77	0	0.00	38	29	43.28	119	0	0.00	145	47	24.35
SCN7A	0	genome.wustl.edu	37	2	167263047	167263047	+	Silent	SNP	C	C	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	2	167263047	167263047	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	silent	c.4092	p.K1364	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	tier1	-	-	70	0	0.00	25	17	40.48	78	0	0.00	70	19	21.11
GVINP1	0	genome.wustl.edu	37	11	6739019	6739019	+	R	SNP	T	T	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	11	6739019	6739019	T	C	SNP	GVINP1	ENST00000526769	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	GVINP1	HGNC	ENSG00000254838	tier1	-	-	21	0	0.00	8	3	27.27	108	0	0.00	73	29	28.43
GRIK3	0	genome.wustl.edu	37	1	37267481	37267481	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	1	37267481	37267481	T	G	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	missense	c.2731	p.S911R	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	tier1	-	-	30	0	0.00	13	4	23.53	16	0	0.00	30	11	26.83
IL37	0	genome.wustl.edu	37	2	113676368	113676368	+	Silent	SNP	C	C	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	2	113676368	113676368	C	A	SNP	IL37	ENST00000263326	human	ensembl	74_37	+1	known	silent	c.639	p.P213	0.000	NULL	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1,prints_IL-1RA/IL-36	-	no_errors	IL37	HGNC	ENSG00000125571	tier1	-	-	25	0	0.00	13	9	40.91	140	0	0.00	84	41	32.80
CTDSPL2	0	genome.wustl.edu	37	15	44811494	44811494	+	Splice_Site	SNP	G	G	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	15	44811494	44811494	G	T	SNP	CTDSPL2	ENST00000260327	human	ensembl	74_37	+1	known	splice_site	c.1239+1	e10+1	1.000	-	-	-	no_errors	CTDSPL2	HGNC	ENSG00000137770	tier1	-	-	114	0	0.00	46	24	34.29	67	0	0.00	34	14	29.17
CD81	0	genome.wustl.edu	37	11	2417894	2417894	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	11	2417894	2417894	G	C	SNP	CD81	ENST00000263645	human	ensembl	74_37	+1	known	missense	c.598	p.G200R	0.081	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD81	HGNC	ENSG00000110651	tier1	-	-	49	0	0.00	26	11	29.73	36	0	0.00	13	7	35.00
ARHGAP10	0	genome.wustl.edu	37	4	148876500	148876500	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	4	148876500	148876500	A	T	SNP	ARHGAP10	ENST00000336498	human	ensembl	74_37	+1	known	missense	c.1425	p.L475F	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP10	HGNC	ENSG00000071205	tier1	-	-	51	0	0.00	68	9	11.69	138	0	0.00	136	23	14.47
ITPR3	0	genome.wustl.edu	37	6	33646250	33646250	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	6	33646250	33646250	A	G	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.3701	p.K1234R	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433	tier1	-	-	37	0	0.00	22	16	42.11	30	0	0.00	20	15	42.86
ELAC2	0	genome.wustl.edu	37	17	12906831	12906832	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	17	12906831	12906832	CA	-	DEL	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	frame_shift_del	c.1044_1043	p.V348fs	0.933:0.932	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744	tier1			85	0	0.00	45	30	40.00	56	0	0.00	50	41	45.05
ENSG00000268985	0	genome.wustl.edu	37	19	17120142	17120143	+	R	DEL	AC	AC	-			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	19	17120142	17120143	AC	-	DEL	ENSG00000268985	ENST00000595134	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991:0.989	-	-	-	no_errors	CTD-2528A14.1	Clone_based_vega_gene	ENSG00000268985	tier1			76	0	0.00	38	12	24.00	102	0	0.00	74	16	17.78
MORC3	0	genome.wustl.edu	37	21	37741363	37741363	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	21	37741363	37741363	C	-	DEL	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	frame_shift_del	c.1697	p.S566fs	0.728	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256	tier1			42	0	0.00	35	4	10.26	57	0	0.00	55	7	11.29
COL11A2	0	genome.wustl.edu	37	6	33156189	33156189	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	6	33156189	33156189	G	C	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.556	p.H186D	0.941	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	-	-	55	0	0.00	20	11	35.48	67	0	0.00	61	4	6.15
BRDT	0	genome.wustl.edu	37	1	92470012	92470012	+	Silent	SNP	C	C	G			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	1	92470012	92470012	C	G	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	silent	c.2430	p.G810	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948	tier1	-	-	65	0	0.00	39	4	9.30	75	1	1.30	47	4	7.84
ZIC4	0	genome.wustl.edu	37	3	147124340	147124340	+	R	SNP	A	A	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	3	147124340	147124340	A	C	SNP	ZIC4	ENST00000464144	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ZIC4	HGNC	ENSG00000174963	tier1	-	-	103	0	0.00	61	7	10.29	111	0	0.00	140	14	9.09
TACSTD2	0	genome.wustl.edu	37	1	59041881	59041898	+	In_Frame_Del	DEL	CTCCCCCAGTTCCTTGAT	CTCCCCCAGTTCCTTGAT	-			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	CTCCCCCAGTTCCTTGAT	CTCCCCCAGTTCCTTGAT	CTCCCCCAGTTCCTTGAT	-	CTCCCCCAGTTCCTTGAT	CTCCCCCAGTTCCTTGAT	Unknown	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	1	59041881	59041898	CTCCCCCAGTTCCTTGAT	-	DEL	TACSTD2	ENST00000371225	human	ensembl	74_37	-1	known	in_frame_del	c.948_931	p.IKELGE311in_frame_del	0.999:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.935:0.910:0.989:0.996:0.994:0.999:0.999:0.998:0.997:0.993	NULL	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	TACSTD2	HGNC	ENSG00000184292	tier1			105	0	0.00	94	7	6.93	105	0	0.00	94	7	6.93
ENSG00000221319	0	genome.wustl.edu	37	20	29637246	29637247	+	R	DEL	TA	TA	-			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	20	29637246	29637247	TA	-	DEL	ENSG00000221319	ENST00000408392	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.029:0.028	-	-	-	no_errors	AL441988.1	Clone_based_ensembl_gene	ENSG00000221319	tier1			128	0	0.00	71	24	25.26	17	0	0.00	3	0	0.00
CTAGE9	0	genome.wustl.edu	37	6	132031121	132031121	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	6	132031121	132031121	T	C	SNP	CTAGE9	ENST00000314099	human	ensembl	74_37	-1	known	missense	c.1037	p.D346G	0.942	NULL	NULL	-	no_errors	CTAGE9	HGNC	ENSG00000236761	tier1	-	-	55	0	0.00	32	7	17.95	0	0	0.00	0	1	100.00
DNM1P47	0	genome.wustl.edu	37	15	102294602	102294602	+	R	SNP	C	C	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	15	102294602	102294602	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	61	0	0.00	40	5	11.11	0	0	0.00	0	0	0.00
ENSG00000238411	0	genome.wustl.edu	37	21	9683195	9683195	+	R	SNP	G	G	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	21	9683195	9683195	G	A	SNP	ENSG00000238411	ENST00000459169	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002	-	-	-	no_errors	CR381670.1	Clone_based_ensembl_gene	ENSG00000238411	tier1	-	-	14	0	0.00	11	6	35.29	0	0	0.00	0	0	0.00
GOLGA6L4	0	genome.wustl.edu	37	15	82932257	82932288	+	R	DEL	ACACAAATAAATTTAAACTATAAATTAGAAAC	ACACAAATAAATTTAAACTATAAATTAGAAAC	-			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	ACACAAATAAATTTAAACTATAAATTAGAAAC	ACACAAATAAATTTAAACTATAAATTAGAAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	15	82932257	82932288	ACACAAATAAATTTAAACTATAAATTAGAAAC	-	DEL	GOLGA6L4	ENST00000560844	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.140:0.148:0.154:0.160:0.165:0.169:0.172:0.175:0.177:0.178:0.179:0.179:0.180:0.179:0.135:0.131:0.126:0.121:0.112:0.097:0.077:0.050:0.041:0.040:0.045:0.047:0.048:0.046:0.049:0.052:0.050:0.046	-	-	-	no_errors	RP13-996F3.5	Clone_based_vega_gene	ENSG00000215749	tier1			0	0	0.00	0	0	0.00	0	0	0.00	0	0	0.00
LDLRAD4	0	genome.wustl.edu	37	18	13387561	13387561	+	R	SNP	C	C	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	18	13387561	13387561	C	A	SNP	LDLRAD4	ENST00000590371	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.925	-	-	-	no_errors	LDLRAD4	HGNC	ENSG00000168675	tier1	-	-	41	0	0.00	13	3	18.75	2	0	0.00	0	0	0.00
MN1	0	genome.wustl.edu	37	22	28194945	28194945	+	Silent	SNP	C	C	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	22	28194945	28194945	C	T	SNP	MN1	ENST00000302326	human	ensembl	74_37	-1	known	silent	c.1587	p.Q529	0.972	NULL	NULL	-	no_errors	MN1	HGNC	ENSG00000169184	tier1	-	-	61	0	0.00	18	9	33.33	0	0	0.00	6	0	0.00
SSX1	0	genome.wustl.edu	37	X	48125797	48125797	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	X	48125797	48125797	G	T	SNP	SSX1	ENST00000376919	human	ensembl	74_37	+1	known	missense	c.542	p.S181I	0.735	pfam_SSXRD_motif	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX1	HGNC	ENSG00000126752	tier1	-	-	353	0	0.00	140	81	36.65	2	0	0.00	6	1	14.29
UMODL1	0	genome.wustl.edu	37	21	43531405	43531405	+	Silent	SNP	G	G	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	21	43531405	43531405	G	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	silent	c.2073	p.R691	0.000	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398	tier1	-	-	24	0	0.00	16	4	20.00	3	0	0.00	0	1	100.00
C7orf10	0	genome.wustl.edu	37	7	40277290	40277290	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	7	40277290	40277290	G	A	SNP	C7orf10	ENST00000309930	human	ensembl	74_37	+1	known	missense	c.562	p.A188T	1.000	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600	tier1	-	-	47	0	0.00	26	4	12.90	109	0	0.00	111	2	1.77
TEKT3	0	genome.wustl.edu	37	17	15215789	15215789	+	Silent	SNP	C	C	T			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	17	15215789	15215789	C	T	SNP	TEKT3	ENST00000338696	human	ensembl	74_37	-1	known	silent	c.888	p.V296	1.000	pfam_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT3	HGNC	ENSG00000125409	tier1	-	-	40	0	0.00	32	7	17.95	62	0	0.00	74	2	2.63
RNPC3	0	genome.wustl.edu	37	1	104076466	104076467	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A7EL-01A-12D-A36J-09	TCGA-DX-A7EL-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ac690007-d6de-4a5c-b7fc-72c128815ebe	26b5714d-b99a-4e34-9e74-e7746a0bd867	1	104076466	104076467	-	A	INS	RNPC3	ENST00000423855	human	ensembl	74_37	+1	known	frame_shift_ins	c.346_347	p.K120fs	0.748:0.784	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RNPC3	HGNC	ENSG00000185946	tier1			46	0	0.00	31	6	16.22	23	0	0.00	22	2	8.33