Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name start stop reference variant type gene_name transcript_name transcript_species transcript_source transcript_version strand transcript_status trv_type c_position amino_acid_change ucsc_cons domain all_domains deletion_substructures transcript_error default_gene_name gene_name_source ensembl_gene_id tier dbSNP GMAF n_ref_count n_alt_count normal_vaf t_ref_count t_alt_count tumor_vaf n_ref_count_val n_alt_count_val normal_vaf_val t_ref_count_val t_alt_count_val tumor_vaf_val CTNND2 0 genome.wustl.edu 37 5 10973228 10973228 + R SNP G G A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 5 10973228 10973228 G A SNP CTNND2 ENST00000495388 human ensembl 74_37 -1 known rna NULL NULL 0.001 - - - no_errors CTNND2 HGNC ENSG00000169862 tier1 - - 17 0 0.00 23 27 54.00 102 0 0.00 56 42 42.86 FLJ40448 0 genome.wustl.edu 37 16 88809844 88809844 + R SNP A A C TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 A A A C A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 16 88809844 88809844 A C SNP FLJ40448 ENST00000333666 human ensembl 74_37 +1 known rna NULL NULL 0.001 - - - no_errors RP5-1142A6.8 Clone_based_vega_gene ENSG00000182376 tier1 - - 43 0 0.00 39 22 36.07 61 0 0.00 31 30 49.18 TRPV6 0 genome.wustl.edu 37 7 142569542 142569542 + Missense_Mutation SNP C C T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 7 142569542 142569542 C T SNP TRPV6 ENST00000359396 human ensembl 74_37 -1 known missense c.2096 p.R699Q 0.904 prints_TRPV6_channel,tigrfam_TRP_channel pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel - no_errors TRPV6 HGNC ENSG00000165125 tier1 - - 66 0 0.00 46 38 45.24 98 0 0.00 50 26 34.21 EIF4A3 0 genome.wustl.edu 37 17 78111251 78111251 + Missense_Mutation SNP G G A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 17 78111251 78111251 G A SNP EIF4A3 ENST00000269349 human ensembl 74_37 -1 known missense c.917 p.S306L 0.986 pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C pfam_D/R_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_R_helicase_DEAD_Q_motif - no_errors EIF4A3 HGNC ENSG00000141543 tier1 - - 37 0 0.00 45 26 36.62 113 0 0.00 44 26 37.14 RNF213 0 genome.wustl.edu 37 17 78337533 78337533 + Missense_Mutation SNP C C T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 17 78337533 78337533 C T SNP RNF213 ENST00000582970 human ensembl 74_37 +1 known missense c.11693 p.S3898F 0.550 superfamily_P-loop_NTPase superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING - no_errors RNF213 HGNC ENSG00000173821 tier1 - - 30 0 0.00 26 26 50.00 38 0 0.00 19 13 40.62 TENM2 0 genome.wustl.edu 37 5 167622271 167622271 + Silent SNP C C T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 5 167622271 167622271 C T SNP TENM2 ENST00000518659 human ensembl 74_37 +1 known silent c.2871 p.Y957 0.435 superfamily_CarboxyPept-like_regulatory,superfamily_ConA-like_lec_gl_sf pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core - no_errors TENM2 HGNC ENSG00000145934 tier1 - - 109 0 0.00 131 81 37.85 108 0 0.00 39 40 50.63 SLC22A8 0 genome.wustl.edu 37 11 62767307 62767307 + Missense_Mutation SNP G G A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 11 62767307 62767307 G A SNP SLC22A8 ENST00000336232 human ensembl 74_37 -1 known missense c.445 p.R149C 0.998 pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp - no_errors SLC22A8 HGNC ENSG00000149452 tier1 - - 70 0 0.00 63 46 41.82 34 0 0.00 12 13 52.00 GRIN3A 0 genome.wustl.edu 37 9 104449124 104449124 + Missense_Mutation SNP C C T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 9 104449124 104449124 C T SNP GRIN3A ENST00000361820 human ensembl 74_37 -1 known missense c.1058 p.R353H 0.139 superfamily_Peripla_BP_I pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt - no_errors GRIN3A HGNC ENSG00000198785 tier1 - - 70 0 0.00 48 62 55.86 140 0 0.00 42 45 51.72 ARHGEF37 0 genome.wustl.edu 37 5 149001584 149001584 + Missense_Mutation SNP G G T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 5 149001584 149001584 G T SNP ARHGEF37 ENST00000333677 human ensembl 74_37 +1 known missense c.1294 p.A432S 1.000 pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain - no_errors ARHGEF37 HGNC ENSG00000183111 tier1 - - 40 0 0.00 44 16 26.67 57 0 0.00 24 11 31.43 ENSG00000249237 0 genome.wustl.edu 37 1 84815493 84815493 + R SNP C C T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 1 84815493 84815493 C T SNP ENSG00000249237 ENST00000505585 human ensembl 74_37 +1 known rna NULL NULL 1.000 - - - no_errors RP11-376N17.4 Clone_based_vega_gene ENSG00000249237 tier1 - - 35 0 0.00 40 33 45.21 75 0 0.00 31 20 39.22 DH14 0 genome.wustl.edu 37 1 225525169 225525169 + Missense_Mutation SNP A A G TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 A A A G A A Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 1 225525169 225525169 A G SNP DH14 ENST00000430092 human ensembl 74_37 +1 known missense c.10003 p.M3335V 0.997 NULL pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Tautomerase/MIF_sf,smart_AAA+_ATPase - no_errors DH14 HGNC ENSG00000185842 tier1 - - 60 0 0.00 58 53 47.75 60 0 0.00 33 27 45.00 TTN 0 genome.wustl.edu 37 2 179598041 179598041 + Missense_Mutation SNP C C T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 2 179598041 179598041 C T SNP TTN ENST00000342992 human ensembl 74_37 -1 known missense c.12247 p.D4083N 1.000 pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom - no_errors TTN HGNC ENSG00000155657 tier1 - - 39 0 0.00 51 20 28.17 124 0 0.00 57 24 29.63 ABCA9 0 genome.wustl.edu 37 17 66988407 66988407 + Missense_Mutation SNP G G A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 17 66988407 66988407 G A SNP ABCA9 ENST00000340001 human ensembl 74_37 -1 known missense c.3625 p.P1209S 1.000 NULL pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like - no_errors ABCA9 HGNC ENSG00000154258 tier1 - - 118 0 0.00 121 66 35.29 139 0 0.00 70 35 33.33 SMOC2 0 genome.wustl.edu 37 6 168999641 168999641 + Missense_Mutation SNP G G A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 6 168999641 168999641 G A SNP SMOC2 ENST00000354536 human ensembl 74_37 +1 known missense c.814 p.V272I 1.000 pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1 pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_EF_hand_dom,pfscan_Thyroglobulin_1 - no_errors SMOC2 HGNC ENSG00000112562 tier1 - - 38 0 0.00 64 38 37.25 41 0 0.00 17 21 55.26 WFIKKN1 0 genome.wustl.edu 37 16 683788 683788 + Missense_Mutation SNP G G A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G A G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 16 683788 683788 G A SNP WFIKKN1 ENST00000319070 human ensembl 74_37 +1 known missense c.1378 p.E460K 0.994 pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m - no_errors WFIKKN1 HGNC ENSG00000127578 tier1 - - 54 0 0.00 56 62 52.54 61 0 0.00 15 10 40.00 ACTN2 0 genome.wustl.edu 37 1 236911194 236911194 + R DEL C C - TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C - C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 1 236911194 236911194 C - DEL ACTN2 ENST00000492101 human ensembl 74_37 +1 known rna NULL NULL 0.000 - - - no_errors ACTN2 HGNC ENSG00000077522 tier1 26 0 0.00 32 20 38.46 166 0 0.00 66 57 46.34 CCDC141 0 genome.wustl.edu 37 2 179721056 179721057 + Frame_Shift_Ins INS - - T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 - - - T - - Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 2 179721056 179721057 - T INS CCDC141 ENST00000420890 human ensembl 74_37 -1 known frame_shift_ins c.2793_2792 p.N931fs 0.999:1.000 NULL pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom - no_errors CCDC141 HGNC ENSG00000163492 tier1 56 0 0.00 60 14 18.92 81 0 0.00 51 16 23.88 NEU4 0 genome.wustl.edu 37 2 242755771 242755771 + Silent SNP G G T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 2 242755771 242755771 G T SNP NEU4 ENST00000325935 human ensembl 74_37 +1 known silent c.129 p.V43 0.872 superfamily_Sialidases superfamily_Sialidases - no_errors NEU4 HGNC ENSG00000204099 tier1 - - 15 0 0.00 24 8 24.24 9 0 0.00 2 3 60.00 DSG2 0 genome.wustl.edu 37 18 29110997 29110997 + Silent SNP C C T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C C T C C Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 18 29110997 29110997 C T SNP DSG2 ENST00000261590 human ensembl 74_37 +1 known silent c.1062 p.V354 1.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin - no_errors DSG2 HGNC ENSG00000046604 tier1 - - 77 0 0.00 111 11 9.02 139 0 0.00 96 10 9.43 OR5M10 0 genome.wustl.edu 37 11 56344977 56344977 + Missense_Mutation SNP G G T TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G G T G G Unknown Valid Somatic Phase_IV WXS Hybrid_Capture_Illumina_Seq Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 11 56344977 56344977 G T SNP OR5M10 ENST00000526812 human ensembl 74_37 -1 known missense c.221 p.S74Y 0.000 pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn - no_errors OR5M10 HGNC ENSG00000254834 tier1 - - 66 0 0.00 89 41 31.06 105 2 1.87 49 22 30.99 PIEZO1 0 genome.wustl.edu 37 16 88800395 88800395 + Missense_Mutation SNP C C G TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 C C Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 16 88800395 88800395 C G SNP PIEZO1 ENST00000301015 human ensembl 74_37 -1 novel missense c.2248 p.E750Q 0.340 NULL pfam_Piezo - no_errors PIEZO1 HGNC ENSG00000103335 tier1 rs202139830 - 28 0 0.00 32 4 11.11 6 0 0.00 4 0 0.00 ZMYM2 0 genome.wustl.edu 37 13 20532979 20532992 + Splice_Site DEL CGGGTGAGGCTTAT CGGGTGAGGCTTAT - TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 CGGGTGAGGCTTAT CGGGTGAGGCTTAT Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 13 20532979 20532992 CGGGTGAGGCTTAT - DEL ZMYM2 ENST00000382869 human ensembl 74_37 +1 known splice_site_del c.1+4_17 e1-1 1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.966:0.904:0.881:0.710:0.606:0.788 - - - no_errors ZMYM2 HGNC ENSG00000121741 tier1 6 0 0.00 2 1 33.33 6 0 0.00 2 1 33.33 BCR 0 genome.wustl.edu 37 22 23658274 23658275 + R INS - - TGC TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 22 23658274 23658275 - TGC INS BCR ENST00000436990 human ensembl 74_37 +1 known rna NULL NULL 0.000:0.000 - - - no_errors BCR HGNC ENSG00000186716 tier1 45 0 0.00 57 7 10.94 0 0 0.00 0 0 0.00 GALNT6 0 genome.wustl.edu 37 12 51785413 51785414 + R INS - - A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 12 51785413 51785414 - A INS GALNT6 ENST00000603203 human ensembl 74_37 -1 known rna NULL NULL 0.001:0.005 - - - no_errors GALNT6 HGNC ENSG00000139629 tier1 20 0 0.00 15 4 21.05 2 0 0.00 1 0 0.00 LOC100508046 0 genome.wustl.edu 37 14 20010278 20010278 + R SNP T T G TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 14 20010278 20010278 T G SNP LOC100508046 ENST00000547584 human ensembl 74_37 +1 known rna NULL NULL 0.002 - - - no_errors RP11-244H18.1 Clone_based_vega_gene ENSG00000258276 tier1 rs201575309 - 18 0 0.00 27 6 18.18 3 0 0.00 6 0 0.00 PPM1B 0 genome.wustl.edu 37 2 44396279 44396280 + R INS - - CGGAGGCGG TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 2 44396279 44396280 - CGGAGGCGG INS PPM1B ENST00000378540 human ensembl 74_37 +1 known rna NULL NULL 1.000:0.999 - - - no_errors PPM1B HGNC ENSG00000138032 tier1 0 0 0.00 0 1 100.00 0 0 0.00 0 1 100.00 SENP3 0 genome.wustl.edu 37 17 7475184 7475184 + R SNP T T A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 T T Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 17 7475184 7475184 T A SNP SENP3 ENST00000578813 human ensembl 74_37 +1 known rna NULL NULL 0.976 - - - no_errors SENP3 HGNC ENSG00000161956 tier1 - - 21 0 0.00 31 8 20.00 1 0 0.00 1 0 0.00 SPEG 0 genome.wustl.edu 37 2 220330668 220330669 + R INS - - GT TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 - - Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 2 220330668 220330669 - GT INS SPEG ENST00000462545 human ensembl 74_37 +1 known rna NULL NULL 0.000:0.003 - - - no_errors SPEG HGNC ENSG00000072195 tier1 20 0 0.00 18 4 18.18 0 0 0.00 0 0 0.00 SIT1 0 genome.wustl.edu 37 9 35649809 35649809 + R SNP G G A TCGA-MJ-A850-01A-11D-A351-09 TCGA-MJ-A850-10A-01D-A351-09 G G Unknown Untested Somatic Phase_IV WXS none Illumina HiSeq d289c714-de51-4192-b307-cf57ec494693 dabaf5ab-f08d-4984-8455-34dbe2b3ee72 9 35649809 35649809 G A SNP SIT1 ENST00000474403 human ensembl 74_37 -1 known rna NULL NULL 0.002 - - - no_errors SIT1 HGNC ENSG00000137078 tier1 - - 59 0 0.00 91 8 8.08 50 0 0.00 27 2 6.90