Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
hisequnc2raw	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_raw_counts.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2raw	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_Z_Score.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2raw	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_normalized_log2_PARADIGM.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2raw	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_geneid_transcriptid_mapping.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2raw	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_scaled_estimate.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2raw	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_all.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2raw	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_normalized_log2.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_raw_counts.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_Z_Score.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_normalized_log2_PARADIGM.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_geneid_transcriptid_mapping.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_scaled_estimate.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_all.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes
hisequnc2	SKCM.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.data.txt	gdac.broadinstitute.org_SKCM.Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data.Level_3.2016012800.0.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:10090:56	mRNAseq_Preprocess_2016012800	SKCM.uncv2.mRNAseq_RSEM_normalized_log2.txt	Expression_mRNAseq	Level_3	txt	gdac.broadinstitute.org_SKCM.mRNAseq_Preprocess.Level_3.2016012800.0.0	yes