Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CASZ1 54897 mdanderson.org 37 1 10699456 10699456 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001079843 exon21 c.C4823A p.P1608H GGCGCGGGGCCCT 44 3 0.07 39 0 0 0 0 TCHH 7062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152082981 152082981 + Silent SNP C C T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_007113 exon3 c.G2712A p.Q904Q CAGCAGCTGCTGT 131 16 0.12 140 0 0 0 0 MCM10 55388 hgsc.bcm.edu 37 10 13230971 13230971 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_182751 exon10 c.G1309T p.G437X TCTGGAGGACGAA 100 4 0.04 84 0 0 20 0 0.00 ZEB1 6935 mdanderson.org 37 10 31816109 31816109 + Missense_Mutation SNP G G A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001174096 exon9 c.G3295A p.A1099T GACAGGGCTGAAA 16 2 0.13 20 0 0 36 0 0.00 KIF5B 3799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 32323677 32323677 + Missense_Mutation SNP T T C novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_004521 exon11 c.A1052G p.N351S ATCTTATTTTTTT 158 11 0.07 157 0 0 148 33 0.22 GDF10 2662 mdanderson.org 37 10 48438614 48438614 + Missense_Mutation SNP C C T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_004962 exon1 c.G97A p.G33S GGCTGCCGGCCAC 23 2 0.09 22 0 0 0 0 VDAC2 7417 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 76970938 76970938 + Missense_Mutation SNP T T A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_003375 exon2 c.T22A p.C8S CAGACTTGCGCGC 119 16 0.13 126 0 0 97 23 0.24 ECHS1 1892 mdanderson.org 37 10 135180455 135180455 + Nonsense_Mutation SNP G G T rs200293355 bycluster;by1000genomes;alternate_allele TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f ECHS1,colon,carcinoma,0,1 ECHS1 NM_004092 exon5 c.C557A p.S186X GCCAGCGACTTCC 44 3 0.07 26 0 0 0 1 396 0 0.00 NLRP6 171389 mdanderson.org 37 11 281438 281438 + Silent SNP A A G novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_138329 exon4 c.A1704G p.S568S GGTTTCAGAGCGT 53 4 0.08 46 0 0 2 0 0.00 OR51G2 81282 mdanderson.org 37 11 4936427 4936427 + Missense_Mutation SNP C C A rs374071063 alternate_allele TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001005238 exon1 c.G467T p.R156L ACACTACGACCCA 53 3 0.06 42 0 0 0 0 COMMD9 29099 hgsc.bcm.edu;mdanderson.org 37 11 36310946 36310946 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_014186 exon1 c.C17A p.A6E TGCTCCGCTGTCA 53 4 0.08 64 0 0 42 0 0.00 IFT46 56912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 118416169 118416169 + Silent SNP G G A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_020153 exon12 c.C927T p.S309S ATGGAGGGACTGG 94 10 0.11 109 0 0 95 20 0.21 PHLDB1 23187 mdanderson.org 37 11 118514575 118514575 + Missense_Mutation SNP G G T rs145786415 bycluster;alternate_allele TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001144758 exon14 c.G2935T p.G979C CGCAGCGGCCCCC 54 3 0.06 57 0 0 66 0 0.00 TECTA 7007 broad.mit.edu 37 11 120989053 120989053 + Silent SNP T T C novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . TECTA NM_005422 exon6 c.T829C p.L277L GATGACTTGAACT 130 4 0.03 127 0 0 329 2 0 0.00 KRT73 319101 mdanderson.org 37 12 53002214 53002214 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f KRT73,right_lower_lobe,carcinoma,0,1 KRT73 NM_175068 exon9 c.C1389A p.A463A CATCCCGGCCATG 39 3 0.08 42 0 0 0 1 0 0 RAP1B 5908 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 69050092 69050092 + Missense_Mutation SNP A A G rs372360254 TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001010942 exon6 c.A331G p.M111V GTTCCAATGATTC 200 16 0.08 222 0 0 96 18 0.19 KCTD12 115207 mdanderson.org 37 13 77459340 77459340 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_138444 exon1 c.C944A p.T315N TAGCTGGTCCAGA 43 3 0.07 48 0 0 51 0 0.00 . 0 broad.mit.edu 37 14 20146543 20146544 + RNA INS - - GTCCC novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . . . . . CTCAGCAGAACAG 8 5 0.63 1 0 0 0 0 NIN 51199 mdanderson.org 37 14 51210176 51210176 + Missense_Mutation SNP C C A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_020921 exon24 c.G5259T p.Q1753H CGCACTCTGATGT 102 5 0.05 100 0 0 26 0 0.00 TSHR 7253 mdanderson.org 37 14 81534631 81534631 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f TSHR_ENST00000554435,NS,carcinoma,+1,2 TSHR_ENST00000554435 NM_001018036 exon3 c.G276T p.L92L GCAGCTGGAATCA 50 3 0.06 57 0 0 1 2 1 0 0.00 C15orf56 644809 mdanderson.org 37 15 40544585 40544585 + Silent SNP A A G novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001039905 exon2 c.T387C p.L129L GAGGCGAAGGGCG 18 3 0.17 12 1 0.0833333333 0 0 RFX7 64864 broad.mit.edu 37 15 56388298 56388298 + Missense_Mutation SNP G G T rs202048055 bycluster;alternate_allele TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . RFX7 NM_022841 exon9 c.C1628A p.T543K GATGATGTTTCGG 143 6 0.04 120 0 0 170 22 0 0.00 CASKIN1 57524 mdanderson.org 37 16 2229742 2229742 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_020764 exon18 c.C3627A p.P1209P CAATGGGGGTAGG 12 2 0.17 18 0 0 0 0 ABCA3 21 mdanderson.org 37 16 2339582 2339582 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001089 exon20 c.C2553A p.A851A CTGGATGGCCTGG 52 3 0.06 43 0 0 26 0 0.00 C16orf96 342346 broad.mit.edu 37 16 4630064 4630064 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . C16orf96 NM_001145011 exon7 c.G2290T p.D764Y ATGAAGGATCGCT 121 4 0.03 129 0 0 28 2 0 0.00 DNAH3 55567 hgsc.bcm.edu;broad.mit.edu 37 16 21073932 21073932 + Silent SNP C C T rs374099468 TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_017539 exon25 c.G3591A p.P1197P CAAGTGCGGCTGC 118 5 0.04 121 0 0 1 0 0.00 DOC2B 8447 broad.mit.edu 37 17 31199 31199 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . DOC2B NM_003585 exon1 c.72delC p.P24fs GGGGCCGGGGCAC 6 2 0.33 8 0 0 6 0 0 LRRC37BP1 147172 hgsc.bcm.edu 37 17 28960994 28960994 + RNA SNP T T C novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . . . . . TTTCTTTTTTTTT 84 4 0.05 68 0 0 2 0 0.00 ATP8B1 5205 mdanderson.org 37 18 55335769 55335769 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_005603 exon19 c.C2101A p.L701M CTCCCAGGAGCTA 61 3 0.05 68 0 0 11 0 0.00 TNFRSF11A 8792 mdanderson.org 37 18 60036584 60036584 + Silent SNP T T C novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_003839 exon9 c.T1434C p.L478L GGGCCTTCCCCCT 16 2 0.13 30 1 0.0333333333 1 0 0.00 SH3GL1 6455 mdanderson.org 37 19 4362649 4362649 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_003025 exon8 c.C813A p.S271S CCCGTTGGACTGC 48 3 0.06 42 0 0 74 0 0.00 ZNRF4 148066 mdanderson.org 37 19 5455601 5455601 + Silent SNP G G A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_181710 exon1 c.G99A p.L33L TCAACTGCCCTCG 35 3 0.09 47 0 0 0 0 GRAMD1A 57655 mdanderson.org 37 19 35504213 35504213 + Silent SNP G G A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_020895 exon8 c.G660A p.E220E CTCAGAGCTGGGC 53 3 0.06 67 0 0 181 0 0.00 KIAA1211L 343990 mdanderson.org 37 2 99439368 99439368 + Silent SNP C C T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_207362 exon7 c.G1368A p.P456P AGGCGCCGGCCCT 18 2 0.11 18 0 0 2 0 0.00 KCNJ3 3760 mdanderson.org 37 2 155555973 155555973 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001260509 exon1 c.G686T p.R229L AGATTCGCTGCAA 15 2 0.13 10 0 0 0 0 GBX2 2637 mdanderson.org 37 2 237076461 237076461 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001485 exon1 c.C154A p.P52T CTACCGGCCGGTA 42 3 0.07 36 0 0 10 0 0.00 ISM1 140862 broad.mit.edu;mdanderson.org 37 20 13260477 13260477 + Missense_Mutation SNP C C T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . ISM1 NM_080826 exon3 c.C575T p.P192L TCAACCCCCCCAG 56 5 0.09 54 0 0 41 0 0 RRBP1 6238 bcgsc.ca 37 20 17640067 17640067 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . RRBP1 . . . . CCCCTCGGCCTTC 57 7 0.12 49 3 0.0612244898 157 130 0 0.00 TTLL3 26140 broad.mit.edu 37 3 9852059 9852060 + In_Frame_Ins INS - - GAT rs34761997 bycluster;by1000genomes TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . TTLL3 NM_001025930 exon1 c.369_370insGAT p.L123delinsLD GGTCCTCGACCCC 11 6 0.55 6 0 0 51 1 0 0.00 TKT 7086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 53264545 53264545 + Silent SNP G G C novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001258028 exon9 c.C1059G p.S353S GAAGGTGGAATTT 153 10 0.07 157 0 0 790 226 0.29 SLC9C1 285335 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 3 111997684 111997684 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f SLC9A10,NS,carcinoma,-2,1 SLC9A10 NM_183061 exon4 c.C210A p.A70A TTGTATGGCGTTT 61 3 0.05 81 0 0 -2 1 1 0 0.00 KIT 3815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 55599320 55599320 + Missense_Mutation SNP G G T rs121913506 bycluster TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f KIT,colon,carcinoma,0,932 KIT NM_000222 exon17 c.G2446T p.D816Y GCCAGAGACATCA 83 10 0.12 87 0 0 0 932 378 205 0.54 . 0 broad.mit.edu 37 4 68311813 68311814 + RNA INS - - ACCGCCACCGCC rs141262603 bycluster;by1000genomes TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . . . . . TACCGCTACCGCC 6 2 0.33 4 0 0 1 0 0.00 BMP2K 55589 mdanderson.org 37 4 79792130 79792130 + Silent SNP A A G novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_017593 exon11 c.A1425G p.Q475Q GCAGCAACAGCAA 26 4 0.15 18 0 0 7 0 0.00 DSPP 1834 bcgsc.ca 37 4 88537285 88537285 + Silent SNP C C T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . DSPP NM_014208 exon5 c.C3471T p.S1157S CAGCAGCGACAGC 150 7 0.05 129 2 0.015503876 174 0 0 CENPE 1062 broad.mit.edu 37 4 104054015 104054015 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . CENPE NM_001813 exon42 c.C6759A p.S2253R CTTTATGCTAGGG 201 5 0.02 165 0 0 253 38 0 0.00 NAA15 80155 broad.mit.edu 37 4 140264029 140264029 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . NAA15 NM_057175 exon5 c.G452T p.W151L CATCATGGATTGG 190 4 0.02 188 0 0 88 61 0 0.00 RAI14 26064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 34823512 34823512 + Missense_Mutation SNP T T C novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001145525 exon17 c.T1574C p.F525S CACATTTCCACGA 126 12 0.10 106 0 0 44 22 0.50 IQGAP2 10788 mdanderson.org 37 5 75969834 75969834 + Silent SNP C C A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f IQGAP2,NS,malignant_melanoma,+1,1 IQGAP2 NM_006633 exon26 c.C3267A p.P1089P ATTCCCCGATGCA 82 4 0.05 82 0 0 1 1 35 0 0.00 SNCAIP 9627 broad.mit.edu 37 5 121758672 121758672 + Silent SNP G G A rs147854746 bycluster;by1000genomes TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f SNCAIP_ENST00000503116,NS,malignant_melanoma,+1,3 SNCAIP NM_005460 exon4 c.G240A p.S80S GGTTTCGCCACTG 234 5 0.02 240 0 0 308 3 1 0 0.00 OR2Y1 134083 mdanderson.org 37 5 180166238 180166238 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001001657 exon1 c.C821A p.A274D AAAAGGGCAACAA 48 3 0.06 61 0 0 0 0 HIST1H2BO 8348 mdanderson.org 37 6 27861278 27861278 + Missense_Mutation SNP A A G novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_003527 exon1 c.A38G p.K13R CCAAAAAGGGCTC 54 3 0.06 86 0 0 3 0 0.00 TSPYL4 23270 mdanderson.org 37 6 116574167 116574167 + Silent SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_021648 exon1 c.C1005A p.G335G GTCTTGGCCTCGG 138 5 0.04 151 0 0 57 0 0.00 IRF5 3663 mdanderson.org 37 7 128588820 128588820 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_001098629 exon9 c.G1493T p.G498V GAGCAGGCCTTGG 37 3 0.08 45 0 0 58 0 0.00 PIGO 84720 mdanderson.org 37 9 35090665 35090665 + Silent SNP A A G novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_032634 exon8 c.T2652C p.P884P AGTAAAAGGACCT 55 3 0.05 41 0 0 93 0 0.00 PALM2-AKAP2 445815 mdanderson.org 37 9 112899361 112899361 + Nonsense_Mutation SNP A A T rs4978872 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_007203 exon8 c.A1537T p.K513X CTGCAGAAGCAGT 96 3 0.03 98 0 0 11 0 0.00 SETX 23064 mdanderson.org 37 9 135152534 135152534 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_015046 exon22 c.C6848A p.T2283K GCTTCTGTCTGTC 52 4 0.08 57 3 0.0526315789 68 0 0.00 MRPS2 51116 mdanderson.org 37 9 138392585 138392585 + Missense_Mutation SNP G G A novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_016034 exon1 c.G29A p.R10Q TGCCCCGAATACT 23 2 0.09 27 0 0 105 0 0.00 OBP2A 29991 mdanderson.org 37 9 138441166 138441166 + Missense_Mutation SNP T T C rs3178142 TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_014582 exon6 c.T503C p.L168P GCGTTCTCGAACA 58 4 0.07 61 0 0 0 0 CXorf36 79742 mdanderson.org 37 X 45017126 45017126 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . . NM_176819 exon3 c.C506A p.A169D GGGCTGGCCAGGC 35 3 0.09 36 0 0 7 0 0.00 GRIPAP1 56850 broad.mit.edu 37 X 48839806 48839806 + Missense_Mutation SNP G G T novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . GRIPAP1 NM_020137 exon16 c.C1319A p.T440K TGCAGCGTTTCCA 62 3 0.05 59 2 0.0338983051 128 133 0 0.00 BCORL1 63035 broad.mit.edu 37 X 129148078 129148078 + Missense_Mutation SNP A A C novel TCGA-2G-AAF1-01A-11D-A42Y-10 TCGA-2G-AAF1-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f38df192-f4ad-456a-9d0b-99441d9cbb8e 1ff85e50-57f2-47c5-a2d2-3c5b3d907a8f . BCORL1 NM_021946 exon3 c.A1330C p.T444P GTGCTGACCCCGA 63 16 0.25 66 15 0.2272727273 213 7 0 0.00