Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV C1orf86 199990 broad.mit.edu 37 1 2116938 2116938 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . C1orf86 NM_001146310 exon8 c.G472A p.A158T TGGGGGCGGGAGT 172 5 0.03 235 0 0 20 9 0 0.00 CLCNKA 1187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 16358965 16358965 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_004070 exon18 c.G1873T p.G625C GCCAGGGGCTGCC 122 20 0.16 202 0 0 1 0 0.00 . 0 broad.mit.edu 37 1 152096616 152096617 + RNA DEL TA TA - novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 TA TA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . TATGTGTATATAT 8 3 0.38 4 0 0 0 0 NCSTN 23385 ucsc.edu 37 1 160319987 160319987 + Missense_Mutation SNP A A G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . NCSTN NM_015331 exon5 c.A529G p.S177G GACTTTAGTTTCC 149 1 0.01 105 0 0 64 209 54 0.26 NFASC 23114 hgsc.bcm.edu;broad.mit.edu 37 1 204939861 204939861 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_015090 exon11 c.G1154T p.G385V TGAATGGGGAACC 96 4 0.04 116 0 0 0 0 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 228468319 228468319 + Silent SNP C C T rs186845111 bycluster;by1000genomes;alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001271223 exon35 c.C9306T p.P3102P TGACCCCGAGGCC 45 4 0.09 61 0 0 2 0 0.00 PITRM1 10531 ucsc.edu 37 10 3193470 3193470 + Missense_Mutation SNP T T C novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . PITRM1 NM_014889 exon15 c.A1707G p.I569M GACAGGTATGGTG 71 1 0.01 100 0 0 109 54 8 0.15 CACNB2 783 mdanderson.org 37 10 18629869 18629869 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_201590 exon1 c.G14T p.R5L ACAGACGCCTTAT 49 3 0.06 59 0 0 0 0 EGR2 1959 mdanderson.org 37 10 64573455 64573455 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001136177 exon3 c.C943A p.L315M GTGGCAGGTGGTG 16 2 0.13 27 0 0 3 0 0.00 TRIM8 81603 mdanderson.org 37 10 104416978 104416978 + Missense_Mutation SNP C C A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_030912 exon6 c.C1523A p.P508H TCCCGCCCACACC 35 3 0.09 45 0 0 101 0 0.00 PTDSS2 81490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 490432 490432 + Silent SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_030783 exon12 c.G1314A p.L438L CACATTGAGGTAC 110 21 0.19 207 0 0 49 17 0.35 FBXO3 26273 mdanderson.org 37 11 33780040 33780040 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_012175 exon4 c.G466A p.V156I CAGGAACCACTAA 51 3 0.06 91 0 0 8 0 0.00 C11orf48 79081 mdanderson.org 37 11 62437194 62437194 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_024099 exon3 c.C232A p.P78T CATGGGGCAAATG 136 6 0.04 127 0 0 7 0 0.00 NRXN2 9379 mdanderson.org 37 11 64418974 64418974 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c NRXN2,NS,carcinoma,+2,1 NRXN2 NM_015080 exon14 c.C2671A p.P891T TGTAGGGCTGGCC 52 3 0.06 73 0 0 2 1 9 0 0.00 AP5B1 91056 mdanderson.org 37 11 65545807 65545807 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_138368 exon2 c.C2157A p.R719R GGCAGGGCGGCCA 38 3 0.08 50 0 0 18 0 0.00 LRTOMT 220074 mdanderson.org 37 11 71817127 71817127 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001145308 exon5 c.C229T p.R77W GGGCTGCGGATCG 25 2 0.08 47 0 0 2 0 0.00 DSCAML1 57453 mdanderson.org 37 11 117352815 117352815 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_020693 exon12 c.C2602A p.L868I AGTTTAGCTCCTT 42 3 0.07 113 1 0.0088495575 0 0 OR8D1 283159 mdanderson.org 37 11 124179874 124179874 + Silent SNP A A G rs200912007 by1000genomes TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001002917 exon1 c.T789C p.P263P ACTTGAAGGGGGC 50 3 0.06 105 1 0.0095238095 0 0 0 CACNA1C 775 mdanderson.org 37 12 2774012 2774012 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_199460 exon37 c.G4398T p.W1466C GGCCTGGCAGGAC 25 3 0.12 44 0 0 0 0 CASC1 55259 broad.mit.edu 37 12 25343549 25343549 + Splice_Site DEL T T - novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . CASC1 NM_001082972 exon2 c.194delA p.K65fs CATACCTTTTTTG 3662 7 0.00 440 0 0 146 0 0 YAF2 10138 mdanderson.org 37 12 42631962 42631962 + Silent SNP G G T rs377532776 alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_005748 exon1 c.C21A p.P7P CCTGGTGGGGCTC 47 3 0.06 93 1 0.0107526882 8 0 0.00 EBPL 84650 hgsc.bcm.edu 37 13 50235160 50235160 + Missense_Mutation SNP G G C novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c EBPL,NS,carcinoma,0,9 EBPL NM_032565 exon4 c.C565G p.L189V GTTCTAGCCATGA 74 4 0.05 131 2 0.0152671756 0 9 322 1 0.00 DCT 1638 mdanderson.org 37 13 95121166 95121166 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c DCT_ENST00000446125,colon,carcinoma,0,5 DCT_ENST00000446125 NM_001129889 exon2 c.C429A p.G143G TAAGGCGCCCAAG 51 3 0.06 91 0 0 0 5 0 0 RNF31 55072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24620535 24620535 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_017999 exon9 c.C1684T p.H562Y GATCGTCATGGCA 45 7 0.16 83 0 0 137 44 0.32 TSHR 7253 mdanderson.org 37 14 81422036 81422036 + Silent SNP G G A rs377366847 TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_000369 exon1 c.G12A p.A4A GCCGGCGGACTTG 26 2 0.08 42 0 0 1 0 0.00 C14orf159 80017 broad.mit.edu 37 14 91671092 91671092 + Missense_Mutation SNP A A G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . C14orf159 NM_001102368 exon12 c.A1487G p.K496R AAGTCAAGGAGGC 66 3 0.05 70 0 0 57 58 0 0.00 LOC727924 0 broad.mit.edu 37 15 22332492 22332492 + RNA SNP A A C novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . TCTCTTATTACTA 80 3 0.04 90 1 0.0111111111 0 0 CASC5 57082 broad.mit.edu 37 15 40915174 40915175 + Frame_Shift_Del DEL TA TA - novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 TA TA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . CASC5 NM_170589 exon11 c.2790_2791del p.930_931del TGAAACTATTTTA 169 10 0.06 169 0 0 269 5 0 0.00 RFX7 64864 hgsc.bcm.edu 37 15 56385646 56385646 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_022841 exon9 c.C4280A p.P1427Q AATAATGGGTCAT 97 4 0.04 117 0 0 11 0 0.00 UBL7 84993 mdanderson.org 37 15 74744664 74744664 + Silent SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_201265 exon4 c.G360A p.L120L GCTGTGCAGGGCA 29 3 0.10 41 0 0 154 0 0.00 RRN3P2 0 broad.mit.edu 37 16 29110438 29110438 + RNA SNP T T C novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . AGTATCTTCAGAG 234 6 0.03 288 0 0 2 0 0.00 ADCY7 113 mdanderson.org 37 16 50338324 50338324 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001114 exon10 c.G1422T p.A474A GGACGCGGCCCTG 24 2 0.08 41 0 0 20 0 0.00 AMFR 267 mdanderson.org 37 16 56448166 56448166 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001144 exon2 c.C346A p.Q116K TTACCTGTCTCTC 40 3 0.08 68 0 0 21 0 0.00 CNOT1 23019 mdanderson.org 37 16 58577329 58577329 + Missense_Mutation SNP C C A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_206999 exon31 c.G4616T p.C1539F AAAAAACACACAG 132 17 0.13 138 10 0.0724637681 4 0 0.00 KCTD19 146212 mdanderson.org 37 16 67333331 67333331 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c KCTD19,NS,carcinoma,0,1 KCTD19 NM_001100915 exon6 c.C921A p.I307I GCTCTCGATGCGA 39 3 0.08 95 0 0 0 1 1 0 0.00 GLG1 2734 mdanderson.org 37 16 74516992 74516992 + Nonsense_Mutation SNP G G T rs370503981 alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001145667 exon10 c.C1602A p.Y534X CTCTGTGTATAAA 19 3 0.16 47 0 0 123 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 213 14 0.07 195 7 0.0358974359 58 16 0.28 SREBF1 6720 mdanderson.org 37 17 17716712 17716712 + Missense_Mutation SNP T T C novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001005291 exon19 c.A3274G p.R1092G GCCGCCTCAGACT 26 3 0.12 32 0 0 123 0 0.00 SP6 80320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 45925774 45925774 + Missense_Mutation SNP A A C novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001258248 exon2 c.T22G p.S8A CCAGAGAGCCGCA 45 15 0.33 64 0 0 2 0 0.00 PDK2 5164 mdanderson.org 37 17 48186690 48186690 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_002611 exon10 c.G1009T p.A337S CTCTACGCCAAGT 43 3 0.07 53 0 0 28 0 0.00 CACNA1G 8913 mdanderson.org 37 17 48638948 48638948 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_198387 exon1 c.G128T p.S43I CGGGCAGCGCGGA 13 2 0.15 14 0 0 1 0 0.00 MRC2 9902 mdanderson.org 37 17 60758222 60758222 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_006039 exon17 c.G2535T p.T845T CTCCACGTGGGCG 35 3 0.09 52 0 0 38 0 0.00 HGS 9146 mdanderson.org 37 17 79660778 79660778 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_004712 exon10 c.G836T p.R279M AGGAGAGGCTGGT 21 2 0.10 35 0 0 84 0 0.00 CCDC57 284001 mdanderson.org 37 17 80129588 80129588 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_198082 exon12 c.C1871A p.T624K GTCTCTGTCGAGG 41 3 0.07 31 0 0 8 0 0.00 MYOM1 8736 mdanderson.org 37 18 3173970 3173970 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_003803 exon8 c.C1140A p.R380R GTGGAAGCGAGTC 42 3 0.07 64 0 0 2 0 0.00 ANKRD12 23253 mdanderson.org 37 18 9204531 9204531 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_015208 exon4 c.G293T p.R98M CTTACAGGACATA 23 2 0.09 51 0 0 1 0 0.00 TNPO2 30000 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 12816532 12816532 + Silent SNP G G C novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . TNPO2 NM_013433 exon15 c.C1719G p.L573L GTCCTTGAGCTCA 78 7 0.09 97 1 0.0103092784 108 128 16 0.13 ILVBL 10994 mdanderson.org 37 19 15233976 15233976 + Missense_Mutation SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_006844 exon4 c.C416T p.A139V GACTGAGCCATCT 29 3 0.10 55 0 0 36 0 0.00 . 0 broad.mit.edu 37 19 20262850 20262850 + RNA DEL T T - rs58259738 bycluster TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . TTTTTCTTTTTTT 7 3 0.43 9 0 0 0 0 ATP4A 495 mdanderson.org 37 19 36041523 36041523 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_000704 exon22 c.C3102A p.Y1034X CTAATAGTAGAGT 32 3 0.09 60 0 0 2 0 0.00 IGFLR1 79713 mdanderson.org 37 19 36230690 36230690 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_024660 exon4 c.C642A p.S214S ATGCGAGGAGGAA 45 3 0.07 62 0 0 101 0 0.00 PRR19 284338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42814216 42814216 + Silent SNP C C G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_199285 exon2 c.C480G p.A160A ACAGGCCTTCCCC 38 5 0.13 77 0 0 15 3 0.20 PPP1R12C 54776 mdanderson.org 37 19 55606890 55606890 + Missense_Mutation SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_017607 exon10 c.C1309T p.R437W CTGTCCGCCTTTC 76 4 0.05 104 0 0 180 0 0.00 ZNF628 89887 mdanderson.org 37 19 55995439 55995439 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_033113 exon3 c.G2879T p.G960V CTCCTGGGCTGAC 37 3 0.08 44 0 0 29 0 0.00 ZNF814 730051 bcgsc.ca 37 19 58385788 58385788 + Missense_Mutation SNP A A G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . ZNF814 NM_001144989 exon3 c.T970C p.Y324H ATTCATAAGGTCT 118 8 0.07 103 0 0 93 8 0 0.00 TAF1B 9014 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 10059215 10059215 + Silent SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_005680 exon13 c.C1317T p.D439D TGTCGACAAACCA 85 9 0.11 74 0 0 69 15 0.22 NPAS2 4862 mdanderson.org 37 2 101598761 101598761 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_002518 exon16 c.G1551T p.Q517H CCTGCAGGCCAAT 42 3 0.07 42 0 0 4 0 0.00 SMPD4 55627 mdanderson.org 37 2 130910946 130910946 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_017951 exon18 c.C2088A p.P696P GCAGTCGGGGAGT 47 3 0.06 88 0 0 191 0 0.00 CSRNP3 80034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166532964 166532964 + Missense_Mutation SNP C C A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001172173 exon6 c.C551A p.A184D GAAGAGCTCTGCT 113 21 0.19 114 0 0 1 0 0.00 CASP8 841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 202137405 202137405 + Silent SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001080125 exon4 c.G633A p.L211L CATCCTGGGAGAA 79 13 0.16 89 0 0 53 12 0.23 FRG1B 284802 hgsc.bcm.edu 37 20 29628491 29628491 + RNA SNP A A G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . AATCCCATAGTTG 56 5 0.09 67 0 0 4 0 0.00 SOGA1 140710 bcgsc.ca 37 20 35422416 35422416 + Missense_Mutation SNP G G T rs377708865 alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . SOGA1 NM_080627 exon14 c.C4069A p.R1357S CGGAGCGCATGGC 55 4 0.07 100 0 0 136 16 0 0.00 STK4 6789 mdanderson.org 37 20 43703740 43703740 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c STK4,rectum,carcinoma,0,3 STK4 NM_006282 exon11 c.C1387T p.R463W GAGATCCGGCAGA 51 3 0.06 71 0 0 0 3 14 0 0.00 ZNF217 7764 bcgsc.ca 37 20 52192819 52192819 + Silent SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . ZNF217 NM_006526 exon3 c.G2484A p.G828G TTGGACCCCCACA 53 4 0.08 64 0 0 227 164 0 0.00 PMEPA1 56937 mdanderson.org 37 20 56227187 56227187 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_020182 exon4 c.C786A p.H262Q TGTGTGGTGGAGC 22 3 0.14 42 0 0 32 0 0.00 LAMA5 3911 mdanderson.org 37 20 60889717 60889717 + Missense_Mutation SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_005560 exon61 c.C8261T p.A2754V AGGTCGGCAAGAT 20 2 0.10 41 0 0 115 0 0.00 COL9A3 1299 mdanderson.org 37 20 61468455 61468455 + Missense_Mutation SNP G G T rs190167637 bycluster;by1000genomes;alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001853 exon30 c.G1624T p.A542S TTAGCCGCGCACC 24 3 0.13 26 0 0 32 0 0.00 RUNX1 861 broad.mit.edu;ucsc.edu;mdanderson.org 37 21 36164782 36164782 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . RUNX1 NM_001754 exon9 c.G1093A p.G365S CGATGCCGATGCC 24 3 0.13 60 0 0 687 26 8 0.31 KRTAP10-3 386682 mdanderson.org 37 21 45978322 45978322 + Missense_Mutation SNP A A G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_198696 exon1 c.T277C p.S93P AGGGGGAGGATGT 20 4 0.20 21 3 0.1428571429 0 0 TPTEP1 0 broad.mit.edu 37 22 17118309 17118309 + RNA DEL A A - novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . CCATGTAAAAAAA 12 4 0.33 6 0 0 0 0 ARVCF 421 mdanderson.org 37 22 19965526 19965526 + Silent SNP C C T rs373349214 alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001670 exon8 c.G1653A p.L551L GGCATGCAGGAGC 43 3 0.07 66 0 0 22 0 0.00 OGG1 4968 mdanderson.org 37 3 9792839 9792839 + Silent SNP G G T rs370483342 alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_016821 exon2 c.G348T p.V116V TTCCGTGGACTCC 113 5 0.04 160 0 0 42 0 0.00 RASSF1 11186 mdanderson.org 37 3 50368037 50368037 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_170714 exon6 c.C1010A p.A337D TGCAGGGCCTCTT 32 3 0.09 54 1 0.0185185185 69 0 0.00 FHIT 2272 mdanderson.org 37 3 59908140 59908140 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_002012 exon8 c.C280A p.H94N GAACGTGCTGAAA 53 3 0.06 64 0 0 0 0 GTF2E1 2960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 120469513 120469513 + Missense_Mutation SNP C C G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_005513 exon2 c.C114G p.I38M CTTGATCAGGAAC 113 13 0.12 140 0 0 48 13 0.27 FBXO40 51725 mdanderson.org 37 3 121340831 121340831 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_016298 exon3 c.G555T p.L185L TGGTCTGTCAGCA 75 4 0.05 94 0 0 0 0 ACAD9 28976 mdanderson.org 37 3 128623311 128623311 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_014049 exon11 c.G1112T p.G371V AACCTGGCTTTCC 49 3 0.06 53 0 0 42 0 0.00 HES1 3280 broad.mit.edu;bcgsc.ca 37 3 193854208 193854208 + Silent SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . HES1 NM_005524 exon1 c.G39A p.P13P GTCCCCGGTGGCT 207 15 0.07 293 1 0.0034129693 23 7 0 0.00 AFAP1 60312 mdanderson.org 37 4 7787938 7787938 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001134647 exon12 c.C1513A p.P505T TGCACGGGACATC 47 3 0.06 64 0 0 23 0 0.00 SHROOM3 57619 mdanderson.org 37 4 77676329 77676329 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_020859 exon7 c.G4693T p.E1565X GATCCCGAGGGGC 52 3 0.06 60 0 0 21 0 0.00 INPP4B 8821 mdanderson.org 37 4 143129612 143129612 + Silent SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_003866 exon15 c.G1038A p.L346L TCTTTGCAGATGT 46 3 0.07 61 0 0 4 0 0.00 FAM160A1 729830 mdanderson.org 37 4 152487469 152487469 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001109977 exon4 c.G58T p.V20F CAGGGAGTTGACC 38 3 0.08 58 0 0 6 0 0.00 HCN1 348980 broad.mit.edu 37 5 45353277 45353277 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c HCN1,NS,carcinoma,0,1 HCN1 NM_021072 exon5 c.C1302A p.Y434X TTCATAGTAATCA 59 3 0.05 91 0 0 298 1 0 0 ATP6AP1L 92270 mdanderson.org 37 5 81614037 81614037 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001017971 exon4 c.C593T p.A198V ACACAGCCGAAGA 31 4 0.13 62 0 0 9 0 0.00 BRD8 10902 mdanderson.org 37 5 137502367 137502367 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_006696 exon11 c.C1056A p.T352T AGGTGTGGTGAAC 45 3 0.07 79 0 0 66 0 0.00 PCDHB13 56123 mdanderson.org 37 5 140595252 140595252 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c PCDHB13,NS,carcinoma,+1,1 PCDHB13 NM_018933 exon1 c.G1557T p.L519L GTCTCTGGACTAC 38 3 0.08 48 0 0 1 1 0 0 SCGB3A2 117156 mdanderson.org 37 5 147261032 147261032 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_054023 exon2 c.G79T p.V27L AACAAAGTGCCCC 45 3 0.07 91 0 0 295 0 0.00 HAVCR2 84868 ucsc.edu;bcgsc.ca 37 5 156535962 156535962 + Silent SNP C C G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . HAVCR2 NM_032782 exon1 c.G33C p.L11L CAGCAGCAGGACA 39 4 0.10 80 0 0 56 8 0 0.00 EEF1E1-MUTED 0 hgsc.bcm.edu;bcgsc.ca 37 6 8090389 8090389 + RNA SNP A A T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . TACAGAAAAAAAG 110 21 0.19 125 0 0 19 3 0.16 BAG6 7917 mdanderson.org 37 6 31610631 31610631 + Missense_Mutation SNP A A G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_004639 exon14 c.T1928C p.L643P CCTTGGAGAAAGG 19 2 0.11 27 0 0 106 0 0.00 ZBTB9 221504 mdanderson.org 37 6 33423539 33423539 + Missense_Mutation SNP A A G novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_152735 exon2 c.A662G p.D221G AAGATGATGATGA 37 3 0.08 70 0 0 37 0 0.00 MDN1 23195 mdanderson.org 37 6 90385226 90385226 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_014611 exon78 c.C12718A p.R4240R AGCGCCGCTGTCG 33 3 0.09 49 0 0 50 0 0.00 SEC63 11231 mdanderson.org 37 6 108224139 108224139 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_007214 exon12 c.C1118A p.A373D TGAACGGCCATCT 80 4 0.05 87 0 0 165 0 0.00 GLI3 2737 broad.mit.edu 37 7 42063136 42063136 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . GLI3 NM_000168 exon10 c.C1428A p.V476V ATAGATGACTTCA 161 5 0.03 179 0 0 312 2 0 0.00 SRRT 51593 mdanderson.org 37 7 100481800 100481800 + Missense_Mutation SNP T T G rs201173432 TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001128853 exon6 c.T697G p.F233V GGCTGGTTTGATA 80 13 0.16 91 11 0.1208791209 183 22 0.12 SND1 27044 mdanderson.org 37 7 127631040 127631040 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_014390 exon16 c.G1710T p.L570F AGGCTTGGTGCAG 44 3 0.07 55 0 0 471 1 0.00 TMEM213 155006 mdanderson.org 37 7 138487805 138487805 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001085429 exon3 c.G315T p.L105F GGACTTGCAAGCG 22 2 0.09 21 0 0 0 0 ADCK2 90956 mdanderson.org 37 7 140373183 140373183 + Missense_Mutation SNP G G T rs151015312 alternate_allele TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_052853 exon1 c.G53T p.C18F TGAGGTGCTTCGA 32 3 0.09 70 0 0 14 0 0.00 ADAM2 2515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 39695678 39695678 + Silent SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c ADAM2,NS,carcinoma,0,2 ADAM2 NM_001464 exon1 c.C27T p.S9S GAGCCCGCTGAGC 121 26 0.21 181 0 0 0 2 0 0 . 100419423 bcgsc.ca 37 8 47609548 47609548 + RNA SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . GTTTAAGATTTTA 29 6 0.21 30 0 0 0 0 KCNV1 27012 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 110986360 110986360 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . KCNV1 NM_014379 exon1 c.C258A p.S86R CAGAGGGCTGGGC 50 5 0.10 56 0 0 101 1 0 0.00 IFNA7 3444 ucsc.edu 37 9 21202073 21202073 + Missense_Mutation SNP C C G rs76903863 bycluster;byfrequency TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . IFNA7 NM_021057 exon1 c.G92C p.S31T CGCAGGCTGTGGG 70 8 0.11 114 7 0.0614035088 24 0 0 LRRC19 64922 bcgsc.ca 37 9 26996466 26996466 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . LRRC19 NM_022901 exon4 c.C627A p.P209P GCTGTTGGGGTAG 62 4 0.06 100 0 0 24 0 0 SPATA31D1 389763 broad.mit.edu 37 9 84608661 84608661 + Silent SNP G G A rs375859502 TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c FAM75D4,NS,carcinoma,+1,2 . NM_001001670 exon4 c.G3276A p.P1092P GCCCCCGCCACAC 34 3 0.09 44 0 0 2 0 0 NINJ1 4814 mdanderson.org 37 9 95888707 95888707 + Silent SNP G G A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_004148 exon2 c.C289T p.L97L TGAGCAGCACCCC 41 3 0.07 60 0 0 58 0 0.00 CRB2 286204 mdanderson.org 37 9 126139289 126139289 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_173689 exon13 c.G3806T p.R1269L GGGCCCGGCTGGA 48 3 0.06 75 0 0 3 0 0.00 CELP 0 broad.mit.edu 37 9 135962465 135962465 + RNA DEL T T - novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . . . . . TGCCCCTGTGCCC 7 3 0.43 4 0 0 1 1 1.00 CAMSAP1 157922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 138719406 138719406 + Missense_Mutation SNP C C A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_015447 exon8 c.G1070T p.S357I CGGCTGCTCTTCT 34 11 0.32 37 0 0 14 11 0.79 RBM10 8241 hgsc.bcm.edu 37 X 47030570 47030672 + Frame_Shift_Del DEL GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT - novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT GGAGGAGGAGGAGGATGAGGAGGAGGAGGAGAAGGCCAGTAACATCGTCATGCTGAGGATGCTGCCACAGGCAGCCACTGAGGATGACGTACGTGCCCCCCAT Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . RBM10 NM_001204468 exon4 c.539_627del p.180_209del GGAGGAGGAGGAG 30 0 0.00 48 0 0 117 7 0 0.00 GNL3L 54552 hgsc.bcm.edu 37 X 54578731 54578731 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_001184819 exon13 c.G1188T p.K396N CGGGAAGATCAGC 103 6 0.06 119 0 0 29 0 0.00 DLG3 1741 bcgsc.ca 37 X 69665375 69665375 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . DLG3 NM_021120 exon1 c.G324T p.E108D GCCAGAGTGCACC 35 4 0.11 39 0 0 100 0 0 CENPI 2491 mdanderson.org 37 X 100383722 100383722 + Silent SNP C C A novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_006733 exon11 c.C1092A p.G364G GATGGGCTCAGTG 41 3 0.07 33 0 0 10 0 0.00 RGAG1 57529 mdanderson.org 37 X 109694903 109694903 + Missense_Mutation SNP C C T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . . NM_020769 exon3 c.C1058T p.A353V TGACGGCCCTACC 51 3 0.06 53 0 0 2 0 0.00 KDM5D 8284 bcgsc.ca 37 Y 21878489 21878489 + Missense_Mutation SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c . KDM5D NM_001146705 exon15 c.C1922A p.A641D CAGTCAGCAGTAC 52 4 0.08 103 0 0 40 10 0 0.00 PLCD3 113026 mdanderson.org 37 17 43194020 43194020 + Silent SNP G G T novel TCGA-2G-AAF8-01A-11D-A42Y-10 TCGA-2G-AAF8-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 1d9d2ea5-041f-47bb-b1b5-fc33203bbcda c7318199-b4b8-42bc-865c-20507b465c0c PLCD3_ENST00000322765,NS,carcinoma,0,2 PLCD3_ENST00000322765 . . . . CTCCTCGGGATTT 47 3 0.06 63 0 0 0 2 30 0 0.00