Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CROCCP3 0 broad.mit.edu 37 1 16812950 16812950 + RNA SNP A A G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . CAGGTCACTTTGC 57 8 0.14 51 1 0.0196078431 5 1 0.20 LPHN2 23266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 82436031 82436031 + Missense_Mutation SNP T T A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_012302 exon14 c.T2716A p.F906I CTACACTTTTTCT 85 12 0.14 110 0 0 7 0 0.00 WDR63 126820 mdanderson.org 37 1 85573833 85573833 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_145172 exon15 c.G1671T p.L557L GCATCTGGATCTC 49 3 0.06 40 0 0 0 0 SPRR1B 6699 broad.mit.edu;mdanderson.org 37 1 153005016 153005016 + Silent SNP C C T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c SPRR1B,NS,carcinoma,0,1 SPRR1B NM_003125 exon2 c.C195T p.C65C GCCATGCCACCCC 80 4 0.05 89 0 0 18 1 0 0 OR10J1 26476 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 159410279 159410279 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c OR10J1,NS,carcinoma,+1,1 OR10J1 NM_012351 exon1 c.G731A p.R244Q AGGGCCGGAAGAA 105 6 0.06 108 1 0.0092592593 1 1 0 0 HLX 3142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 221054636 221054636 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_021958 exon2 c.C693G p.N231K CATTAACGAGGCT 118 18 0.15 147 0 0 15 0 0.00 ARID4B 51742 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235345007 235345007 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . ARID4B NM_016374 exon20 c.G3227C p.G1076A AGCTCCCCAGCAA 59 10 0.17 86 1 0.011627907 142 63 17 0.27 TET1 80312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70412305 70412305 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_030625 exon6 c.C4415G p.T1472S TGTACACCGGTAA 66 12 0.18 72 0 0 69 23 0.33 LGI1 9211 broad.mit.edu 37 10 95553006 95553006 + Missense_Mutation SNP A A G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . LGI1 NM_005097 exon7 c.A737G p.N246S ATTTGAATGATGA 90 4 0.04 73 0 0 69 0 0 MKI67 4288 broad.mit.edu;mdanderson.org 37 10 129905196 129905196 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . MKI67 NM_002417 exon13 c.C4908A p.S1636S CCCCAGGGATGTC 156 6 0.04 139 0 0 363 81 0 0.00 RASSF7 8045 mdanderson.org 37 11 561874 561874 + Missense_Mutation SNP G G A rs371827786 TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001143994 exon2 c.G106A p.A36T GTCATCGCACTAG 39 3 0.08 41 0 0 30 0 0.00 SLC25A22 79751 mdanderson.org 37 11 791955 791955 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001191060 exon10 c.C932A p.A311E GACTCCGCGATGC 22 2 0.09 22 0 0 93 0 0.00 TSPAN4 7106 mdanderson.org 37 11 864454 864454 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001025237 exon5 c.G273T p.L91L GCTGCTGCTGGTG 44 3 0.07 40 0 0 212 0 0.00 DCHS1 8642 mdanderson.org 37 11 6653426 6653426 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_003737 exon6 c.C3317A p.S1106Y TCCTCAGACAAGC 49 3 0.06 78 0 0 17 0 0.00 ABCC8 6833 bcgsc.ca 37 11 17464362 17464362 + Missense_Mutation SNP T T C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . ABCC8 NM_000352 exon10 c.A1535G p.Y512C CAGGCGTACAGCT 38 0 0.00 56 0 0 170 0 0 BCL9L 283149 mdanderson.org 37 11 118771819 118771819 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_182557 exon6 c.C2633A p.P878H CTCATGGGCATTG 47 3 0.06 62 0 0 13 0 0.00 SLC37A2 219855 mdanderson.org 37 11 124951662 124951662 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_198277 exon9 c.G745T p.E249X CCAGCTGAGAACC 37 3 0.08 71 0 0 19 0 0.00 KRT74 121391 mdanderson.org 37 12 52967458 52967458 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_175053 exon1 c.G104T p.C35F GCTGCACAGTAAG 46 3 0.07 67 0 0 0 0 ANKS1B 56899 broad.mit.edu;mdanderson.org 37 12 100200303 100200303 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . ANKS1B NM_152788 exon4 c.C548A p.A183E GGATGTGCACTGA 113 5 0.04 149 0 0 180 0 0 UBE3B 89910 hgsc.bcm.edu 37 12 109972569 109972569 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c UBE3B,colon,carcinoma,0,1 UBE3B NM_130466 exon28 c.G3189T p.T1063T GAACACGGGCTTT 65 3 0.05 61 0 0 0 1 105 0 0.00 MED13L 23389 mdanderson.org 37 12 116420941 116420941 + Missense_Mutation SNP A A G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c MED13L,NS,carcinoma,0,1 MED13L NM_015335 exon21 c.T4936C p.S1646P CCTGTGAGGGCTG 57 3 0.05 74 0 0 0 1 36 0 0.00 PXN 5829 mdanderson.org 37 12 120659472 120659472 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001243756 exon6 c.C785A p.A262D CTGGTGGCAGAGG 14 2 0.14 26 0 0 135 0 0.00 ANKRD20A19P 0 broad.mit.edu 37 13 24519964 24519964 + RNA SNP G G A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TTGACAGCCGCCC 51 3 0.06 56 0 0 0 0 STARD13 90627 mdanderson.org 37 13 33701523 33701523 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_178006 exon6 c.C1909A p.H637N AGCCGTGCTTGTT 21 2 0.10 27 0 0 6 0 0.00 PROZ 8858 mdanderson.org 37 13 113813044 113813044 + Missense_Mutation SNP G G T rs1885956 bycluster;byhapmap;alternate_allele TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001256134 exon1 c.G70T p.A24S CCCTCAGGTAGGC 29 3 0.10 23 0 0 0 0 CUL4A 8451 bcgsc.ca 37 13 113898807 113898807 + Missense_Mutation SNP A A T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . CUL4A NM_001008895 exon12 c.A1312T p.I438F ATCATGATCCTGT 150 0 0.00 213 0 0 50 68 0 0.00 . 28444 bcgsc.ca 37 14 106691797 106691797 + RNA SNP T T G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TATATGTAACTAC 195 0 0.00 157 0 0 159 4 0.03 SLC12A6 9990 mdanderson.org 37 15 34547512 34547512 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_133647 exon7 c.C827A p.T276N AATGTGGTACCAA 47 3 0.06 45 0 0 20 0 0.00 ATP8B4 79895 broad.mit.edu 37 15 50223331 50223331 + Missense_Mutation SNP T T C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . ATP8B4 NM_024837 exon16 c.A1627G p.R543G ACATCCTTTTTCT 165 3 0.02 148 0 0 173 1 0 0.00 USP8 9101 mdanderson.org 37 15 50733583 50733583 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001128610 exon3 c.G142T p.E48X ACAGCAGAAGAAT 45 3 0.07 42 0 0 57 0 0.00 HERC1 8925 mdanderson.org 37 15 63958659 63958659 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_003922 exon41 c.C8219A p.P2740Q CTGCTTGGGTCTG 51 3 0.06 56 0 0 17 0 0.00 HCN4 10021 mdanderson.org 37 15 73660063 73660063 + Silent SNP C C A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_005477 exon1 c.G549T p.S183S GTCCACCGAGGGC 16 2 0.13 16 0 0 4 0 0.00 PKD1 5310 mdanderson.org 37 16 2143982 2143982 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001009944 exon36 c.C10651A p.P3551T AGGCCGGCAGCAG 16 2 0.13 31 0 0 27 0 0.00 GLYR1 84656 mdanderson.org 37 16 4855285 4855285 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_032569 exon16 c.C1614A p.D538E AGACTGGTCCAGC 50 3 0.06 48 0 0 105 0 0.00 GPRC5B 51704 mdanderson.org 37 16 19871856 19871856 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_016235 exon4 c.C1178A p.A393D GGCGGAGCAGTTG 53 3 0.06 62 0 0 140 0 0.00 SMPD3 55512 mdanderson.org 37 16 68405129 68405129 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_018667 exon3 c.C956A p.A319D CTGTTGGCACCTG 35 3 0.09 34 0 0 1 0 0.00 ZC3H18 124245 broad.mit.edu 37 16 88664670 88664670 + Missense_Mutation SNP A A C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c ZC3H18,NS,carcinoma,+1,1 ZC3H18 NM_144604 exon4 c.A773C p.D258A AAGCCGACCCCTT 45 14 0.31 54 9 0.1666666667 90 1 84 6 0.07 C1QBP 708 hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 17 5336638 5336638 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001212 exon5 c.C674T p.T225I TTGAGTGTATAAT 130 11 0.08 136 0 0 1771 328 0.19 ANKRD13B 124930 mdanderson.org 37 17 27936112 27936112 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_152345 exon6 c.G574T p.A192S ACAAGCGCCGTGG 44 3 0.07 34 0 0 0 0 RHOT1 55288 broad.mit.edu;ucsc.edu;mdanderson.org 37 17 30536465 30536465 + Splice_Site SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . RHOT1 NM_001033568 exon19 c.1835+1G>T . TGCTTTGTAAGTT 34 4 0.12 31 0 0 69 0 0 ERBB2 2064 broad.mit.edu 37 17 37884152 37884152 + Missense_Mutation SNP A A C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . ERBB2 NM_004448 exon27 c.A3623C p.H1208P AGCCCCACCCTCC 123 10 0.08 101 6 0.0594059406 429 71 2 0.03 LUC7L3 51747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48821082 48821082 + Missense_Mutation SNP T T A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_006107 exon6 c.T442A p.S148T TTAGGGTCTGAAG 135 24 0.18 139 0 0 463 107 0.23 GGA3 23163 mdanderson.org 37 17 73236094 73236094 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_138619 exon13 c.C1359A p.S453S GCTTGAGGAGGGG 43 3 0.07 43 0 0 112 0 0.00 DOHH 83475 mdanderson.org 37 19 3496779 3496779 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c DOHH,NS,carcinoma,+2,1 DOHH NM_001145165 exon2 c.C34A p.Q12K GCGTCTGCCCGAT 33 3 0.09 18 0 0 2 1 95 0 0.00 SAFB 6294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 5667118 5667118 + Missense_Mutation SNP G G T rs201604799 by1000genomes;alternate_allele TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_002967 exon18 c.G2396T p.G799V GCTGGGGGGGCTA 126 25 0.20 124 0 0 434 134 0.31 SLC25A23 79085 mdanderson.org 37 19 6442129 6442129 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_024103 exon10 c.C1264A p.L422I GACGTAGCAGACC 44 3 0.07 43 0 0 48 0 0.00 CAMSAP3 57662 mdanderson.org 37 19 7677030 7677030 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001080429 exon13 c.G1732T p.V578L AAGGCGGTGGCTT 39 3 0.08 34 0 0 48 0 0.00 CBLC 23624 mdanderson.org 37 19 45284237 45284237 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_012116 exon2 c.G429T p.K143N GGGAAAGTACTGT 48 3 0.06 55 0 0 4 0 0.00 SSC5D 284297 mdanderson.org 37 19 56028595 56028595 + Silent SNP C C T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001144950 exon14 c.C2952T p.S984S AGGTTCCCCGAGG 22 2 0.09 9 0 0 0 0 ANKRD36BP2 0 broad.mit.edu 37 2 89088242 89088243 + RNA INS - - T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . TTTTTTCTTTTTT 7 3 0.43 7 0 0 0 0 FSIP2 401024 broad.mit.edu 37 2 186680198 186680198 + Splice_Site SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . FSIP2 NM_173651 exon19 c.G20693T p.G6898V CTACTGGGTATAT 310 5 0.02 307 0 0 251 0 0 NBEAL1 65065 broad.mit.edu 37 2 204000666 204000666 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . NBEAL1 NM_001114132 exon27 c.G3993T p.L1331F GAGTTTGGAGGAT 303 6 0.02 304 0 0 266 0 0 TMEM74B 55321 mdanderson.org 37 20 1164436 1164436 + Missense_Mutation SNP C C T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_018354 exon1 c.G10A p.A4T CCTGTGCTGGTGG 35 4 0.11 44 1 0.0227272727 4 0 0.00 PYGB 5834 mdanderson.org 37 20 25262727 25262727 + Missense_Mutation SNP A A C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_002862 exon12 c.A1462C p.T488P GGCATCACCCCCC 49 19 0.39 40 7 0.175 980 246 0.25 DLGAP4 22839 broad.mit.edu 37 20 35075236 35075236 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c DLGAP4,colon,carcinoma,+1,1 DLGAP4 NM_014902 exon6 c.G1544T p.R515L ACCTGCGTGCCAT 107 4 0.04 122 0 0 111 1 20 0 0.00 LAMA5 3911 mdanderson.org 37 20 60903333 60903333 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_005560 exon35 c.C4616A p.T1539K GGGTCTGTGAGCT 36 3 0.08 69 0 0 65 0 0.00 SREBF2 6721 mdanderson.org 37 22 42293166 42293166 + Splice_Site SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_004599 exon14 c.2605+1G>T . CCCTGGGTAAGCA 41 3 0.07 42 0 0 4 0 0.00 FBLN2 2199 mdanderson.org 37 3 13655520 13655520 + Missense_Mutation SNP C C T rs148310871 bycluster;by1000genomes TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c FBLN2_ENST00000492059,colon,carcinoma,-1,1 FBLN2_ENST00000492059 NM_001998 exon5 c.C1585T p.R529W CGCGTGCGGGCCG 42 3 0.07 32 0 0 0 -1 1 32 0 0.00 ACVR2B 93 bcgsc.ca 37 3 38518867 38518867 + Missense_Mutation SNP C C T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . ACVR2B NM_001106 exon2 c.C142T p.R48C CTGGAGCGCTGCG 61 0 0.00 80 0 0 88 13 0 0.00 TKT 7086 mdanderson.org 37 3 53275169 53275169 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001135055 exon3 c.C318A p.D106E GTCCAAGTCGGAG 36 3 0.08 16 0 0 1038 0 0.00 MAGI1 9223 hgsc.bcm.edu 37 3 65425594 65425594 + Silent SNP C C T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c MAGI1_ENST00000402939,NS,carcinoma,0,9 MAGI1_ENST00000402939 NM_001033057 exon9 c.G1230A p.Q410Q CTGTTGCTGCTGC 40 10 0.25 28 1 0.0357142857 0 9 7 0 0.00 MED12L 116931 broad.mit.edu;ucsc.edu;mdanderson.org 37 3 151093929 151093929 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . MED12L NM_053002 exon26 c.G3875A p.C1292Y TTATCTGTTATCC 78 12 0.15 66 1 0.0151515152 271 7 0 0.00 DSPP 1834 bcgsc.ca 37 4 88536118 88536118 + Silent SNP T T C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . DSPP NM_014208 exon5 c.T2304C p.S768S CAGCAGTGATAGC 85 1 0.01 88 0 0 174 0 0 SEC24B 10427 mdanderson.org 37 4 110460718 110460718 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_006323 exon24 c.G3694T p.D1232Y TCCAGAGATGAGA 40 3 0.08 67 0 0 47 0 0.00 PLEKHG4B 153478 mdanderson.org 37 5 143516 143516 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_052909 exon3 c.G641T p.R214I ATGGCAGAGCAGT 33 3 0.09 45 0 0 26 0 0.00 BRD9 65980 mdanderson.org 37 5 884147 884147 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c BRD9_ENST00000467963,NS,carcinoma,+1,4 BRD9_ENST00000467963 NM_023924 exon8 c.C872A p.T291K CTGTCCGTCAAGC 52 3 0.06 48 0 0 1 4 72 0 0.00 FBN2 2201 mdanderson.org 37 5 127623058 127623058 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001999 exon54 c.C6822A p.S2274S TTCATAGGACCCA 52 3 0.06 66 0 0 0 0 DEK 7913 bcgsc.ca 37 6 18264096 18264096 + Missense_Mutation SNP C C G rs147127829 bycluster;byfrequency;by1000genomes TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . DEK NM_003472 exon2 c.G123C p.E41D CTCCTCCTCGTCG 103 4 0.04 113 0 0 31 144 0 0.00 HIST1H2AI 8329 broad.mit.edu 37 6 27776148 27776148 + Missense_Mutation SNP C C T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . HIST1H2AI NM_003509 exon1 c.C161T p.A54V TGGCGGCGGTGCT 137 14 0.10 131 0 0 9 41 7 0.17 COL11A2 1302 mdanderson.org 37 6 33140407 33140407 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_080680 exon39 c.C2798T p.A933V TCTCCTGCTGCTC 40 3 0.08 33 0 0 0 0 B3GALT4 8705 bcgsc.ca 37 6 33245604 33245604 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . B3GALT4 NM_003782 exon1 c.G408T p.G136G CCAGGGGGATATC 40 0 0.00 44 0 0 30 16 0 0.00 ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33652420 33652420 + Missense_Mutation SNP C C G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_002224 exon38 c.C5092G p.R1698G CAGAACCGGAAGT 98 20 0.20 121 0 0 137 31 0.23 ZNF76 7629 mdanderson.org 37 6 35259494 35259494 + Missense_Mutation SNP A A G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_003427 exon9 c.A911G p.N304S ATAAGAATCACGT 18 3 0.17 26 0 0 60 0 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72669366 72669367 + RNA INS - - T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . CCCACAATTTTTT 6 3 0.50 5 0 0 0 0 ANKIB1 54467 mdanderson.org 37 7 91991528 91991528 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_019004 exon10 c.G1427T p.C476F AGCCTTGTGACTG 52 3 0.06 37 0 0 73 0 0.00 ATP5J2-PTCD1 100526740 mdanderson.org 37 7 99032854 99032854 + Silent SNP C C A rs373379334 alternate_allele TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001198879 exon3 c.G159T p.V53V GAGTCTCACGAAG 14 2 0.14 16 0 0 77 0 0.00 FLNC 2318 broad.mit.edu;ucsc.edu 37 7 128490068 128490068 + Silent SNP A A G novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . FLNC NM_001458 exon31 c.A5238G p.E1746E CTCTGAAGTGCCA 16 4 0.25 13 0 0 339 9 0 0.00 KCP 375616 broad.mit.edu 37 7 128548294 128548316 + RNA DEL AAGAAAGAAAGAAGAAAGAAAGA AAGAAAGAAAGAAGAAAGAAAGA - rs139059512 by1000genomes;alternate_allele TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 AAGAAAGAAAGAAGAAAGAAAGA AAGAAAGAAAGAAGAAAGAAAGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . KCP . . . . GAAAGGAAGAAAG 5 0 0.00 6 0 0 16 0 0 DUSP4 1846 mdanderson.org 37 8 29207576 29207576 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001394 exon1 c.C220T p.R74W GCCGCCGCACGAT 43 3 0.07 33 0 0 10 0 0.00 UBR5 51366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 103277378 103277378 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_015902 exon53 c.G7551T p.R2517S GCCAGGCCTTGGA 155 16 0.10 115 0 0 124 20 0.16 ADCY8 114 mdanderson.org 37 8 131880105 131880105 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001115 exon9 c.C2197A p.L733I AAGGAAGCAAACT 41 3 0.07 43 0 0 0 0 RHPN1 114822 mdanderson.org 37 8 144462334 144462334 + Missense_Mutation SNP G G A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_052924 exon10 c.G1205A p.R402H AGGAGCGCAGGCA 28 3 0.11 21 0 0 9 0 0.00 LOC642236 0 bcgsc.ca 37 9 68433564 68433564 + RNA SNP C C A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . CATTTTCCCCTAA 149 9 0.06 129 2 0.015503876 0 0 LOC100132077 0 broad.mit.edu 37 9 97108464 97108464 + RNA DEL T T - novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . ACAATCTTTTTTT 14 5 0.36 15 0 0 0 0 ZNF782 158431 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 99581871 99581871 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001001662 exon6 c.G434T p.C145F CCCTGGCAAGCAG 56 5 0.09 64 0 0 7 2 0.29 TTF1 7270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135275424 135275424 + Missense_Mutation SNP T T C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_007344 exon3 c.A1589G p.Q530R TCACCTTGTGCTT 148 31 0.21 149 0 0 42 13 0.31 DDX31 64794 broad.mit.edu 37 9 135537931 135537931 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . DDX31 NM_022779 exon2 c.C542A p.P181Q TTCTTTGGAGAAA 144 5 0.03 148 1 0.0067567568 76 66 0 0.00 NOTCH1 4851 mdanderson.org 37 9 139399468 139399468 + Missense_Mutation SNP G G T rs370713185 alternate_allele TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c NOTCH1_ENST00000277541,NS,lymphoid_neoplasm,0,2 NOTCH1_ENST00000277541 NM_017617 exon26 c.C4675A p.L1559M AGTCCAGCCCGTC 44 4 0.09 44 0 0 0 2 29 0 0.00 TPRN 286262 mdanderson.org 37 9 140094386 140094386 + Missense_Mutation SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_001128228 exon1 c.C778A p.H260N GCGGGTGGAGGGA 26 2 0.08 12 0 0 15 0 0.00 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 2573 2573 + RNA SNP G G A rs28683810 TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . . . . . GGCCGCGGTACCC 48 9 0.19 49 0 0 0 0 NAP1L3 4675 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 92927246 92927246 + Missense_Mutation SNP G G C novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . NAP1L3 NM_004538 exon1 c.C1058G p.P353R CTTACAGGCTGGC 114 30 0.26 98 1 0.0102040816 81 20 6 0.30 PNCK 139728 broad.mit.edu 37 X 152939604 152939604 + Silent SNP G G T novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . PNCK NM_001039582 exon1 c.C27A p.A9A TGACCCGGCCACT 54 4 0.07 32 0 0 70 1 0 0.00 ABCD1 215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 152991228 152991228 + Missense_Mutation SNP C C A novel TCGA-2G-AAFG-01A-11D-A42Y-10 TCGA-2G-AAFG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq bb18732a-4468-45f8-b285-a159c6251ec5 b3717c8e-343c-48c0-8d20-5035da43230c . . NM_000033 exon1 c.C507A p.H169Q GGCCCACGCCTAC 61 10 0.16 58 0 0 41 9 0.22