Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
MATN1	4146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	31196429	31196429	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	CGGCACGGTTGTG		86	15	0.17	69	0	0				0	0				
GPBP1L1	60313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46124749	46124749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_021639	exon4	c.A11C	p.H4P	AAATCATGCTGCG		85	8	0.09	46	0	0				248	69	0.28			
LPPR5	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	99470160	99470160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001037317	exon1	c.C68T	p.T23M	ATCACCGTCCCTG		134	21	0.16	165	0	0				0	0				
PHGDH	26227	mdanderson.org	37	1	120277316	120277316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006623	exon6	c.G570T	p.Q190H	TCAGCAGCTGCCC		36	3	0.08	51	0	0				560	0	0.00			
BCL9	607	broad.mit.edu	37	1	147092151	147092151	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	BCL9	NM_004326	exon8	c.T2190C	p.S730S	CAACTCTCAGATG		145	3	0.02	86	0	0		150		42	0	0.00			
RUSC1	23623	broad.mit.edu	37	1	155292770	155292770	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	RUSC1	NM_001105204	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG		36	17	0.47	36	10	0.2777777778		85		0	0				
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197115320	197115320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001206846	exon1	c.C248A	p.P83Q	GCGGCCGGGAAGT		106	20	0.19	71	0	0				5	3	0.60			
FRMD4A	55691	mdanderson.org	37	10	13698833	13698833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	FRMD4A,colon,carcinoma,0,1	FRMD4A	NM_018027	exon22	c.C2756A	p.A919E	CGGCCCGCGCCCT		18	2	0.11	20	0	0		0	1	0	0				
ARMC3	219681	broad.mit.edu	37	10	23270572	23270572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	ARMC3	NM_173081	exon10	c.G1118A	p.R373Q	AGGTACGGGAAGC		44	9	0.20	71	2	0.0281690141		102		0	0				
RTKN2	219790	broad.mit.edu	37	10	63995874	63995874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	RTKN2	NM_145307	exon6	c.C637A	p.L213I	CTTGAAGCACTGA		88	4	0.05	98	0	0		68		4	0	0.00			
MUC2	4583	mdanderson.org	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC		23	3	0.13	25	1	0.04				0	0				
MUC2	4583	mdanderson.org	37	11	1093324	1093324	+	Missense_Mutation	SNP	G	G	A	rs201143282		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2	MUC2_ENST00000441003	NM_002457	exon30	c.G5143A	p.G1715S	CCCACCGGCACAC		29	2	0.07	34	0	0		0	2	0	0				
NUMA1	4926	mdanderson.org	37	11	71715103	71715103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006185	exon26	c.C6166T	p.P2056S	TCTTGGGTGTGTT		67	7	0.10	55	0	0				198	29	0.15			
DSCAML1	57453	mdanderson.org	37	11	117329471	117329471	+	Missense_Mutation	SNP	G	G	T	rs150682070	bycluster;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_020693	exon19	c.C3747A	p.D1249E	CTCACCGTCCTCC		23	3	0.13	29	0	0				0	0				
BSX	390259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	122848423	122848423	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001098169	exon3	c.C636G	p.T212T	TGGCTCGGTCAGC		30	8	0.27	39	0	0				0	0				
OR10S1	219873	mdanderson.org	37	11	123847415	123847415	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001004474	exon1	c.C984T	p.S328S	GGGTGGGCTGCCT		35	3	0.09	42	0	0				0	0				
ST14	6768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	130068300	130068300	+	Silent	SNP	C	C	T	rs367833176		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	ST14,caecum,carcinoma,0,1	ST14	NM_021978	exon13	c.C1557T	p.D519D	CAGCGACGAGCAG		116	7	0.06	115	0	0		0	1	61	10	0.16			
NANOG	79923	broad.mit.edu	37	12	7947397	7947397	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	NANOG	NM_024865	exon4	c.C624G	p.N208K	GAGCAACCAGACC		310	29	0.09	202	0	0		30		882	119	0.13			
TAS2R46	259292	hgsc.bcm.edu	37	12	11214498	11214498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_176887	exon1	c.A396G	p.I132M	CAATAGTATCACC		144	7	0.05	102	0	0				0	0				
LTB4R2	56413	mdanderson.org	37	14	24780818	24780818	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_019839	exon2	c.G948T	p.G316G	CCGAGGGGGCGGC		20	3	0.15	30	0	0				4	0	0.00			
NKX2-1	7080	bcgsc.ca	37	14	36988452	36988452	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	NKX2-1	NM_001079668	exon2	c.G201A	p.P67P	CGCCAGCGGAGCC		51	4	0.08	61	0	0		21		0	0				
SLC8A3	6547	mdanderson.org	37	14	70512975	70512975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_183002	exon8	c.A2473G	p.T825A	TGCCCGTCACGTT		50	3	0.06	75	0	0				0	0				
RIN3	79890	mdanderson.org	37	14	93118316	93118316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_024832	exon6	c.G922T	p.A308S	GCCCCTGCCTGTC		29	3	0.10	22	0	0				3	0	0.00			
LOC727924	0	broad.mit.edu	37	15	22332432	22332432	+	RNA	SNP	C	C	T	rs376977769		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	TTCTAACGTGACA		40	3	0.08	46	2	0.0434782609				0	0				
LOC727924	0	broad.mit.edu	37	15	22332442	22332442	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	ACAGAACTTGTTC		44	3	0.07	52	2	0.0384615385				0	0				
.	388112	bcgsc.ca	37	15	35377147	35377147	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	GGAGGAAGGAAGA		77	12	0.16	90	1	0.0111111111				511	448	0.88			
TCF12	6938	mdanderson.org	37	15	57574716	57574716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_207037	exon20	c.G2052T	p.E684D	GGCAGAGCCGCCA		28	3	0.11	40	0	0				20	0	0.00			
ACAN	176	hgsc.bcm.edu	37	15	89399983	89399983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	AGC1,NS,carcinoma,+2,4	AGC1	NM_001135	exon12	c.G4167T	p.E1389D	AGTAGAGGACATC		55	3	0.05	49	2	0.0408163265		2	4	3	0	0.00			
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3367499	3367499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_153028	exon6	c.C521G	p.S174C	TTAGCTCTGACCT		195	37	0.19	146	0	0				100	32	0.32			
CAPNS2	84290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55601279	55601279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032330	exon1	c.T611A	p.M204K	GAGATATGGATTT		131	19	0.15	119	0	0				0	0				
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	76555039	76555039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	CNTNAP4_ENST00000478060,NS,carcinoma,-1,2	CNTNAP4_ENST00000478060	NM_138994	exon15	c.T2149C	p.S717P	ACAGGATCATTTT		76	25	0.33	73	1	0.0136986301		-1	2	0	0				
CPNE7	27132	bcgsc.ca	37	16	89643986	89643986	+	Missense_Mutation	SNP	G	G	A	rs369719899		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	CPNE7	NM_153636	exon2	c.G214A	p.V72M	CATCCCGTGTTCT		58	4	0.07	61	0	0		56		7	0	0.00			
RPL26	6154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8280958	8280958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_000987	exon4	c.G362T	p.R121L	GCTTTCCGTTCGA		10	4	0.40	15	0	0				11087	3407	0.31			
MYH10	4628	mdanderson.org	37	17	8526560	8526560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_005964	exon2	c.C5A	p.A2E	CTCTGCGCCATTG		39	3	0.08	34	0	0				32	0	0.00			
TVP23C	0	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA		157	4	0.03	168	3	0.0178571429				40	8	0.20	rescued with RNA-seq		
THRA	7067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38244622	38244622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	THRA_ENST00000450525,NS,carcinoma,0,1	THRA_ENST00000450525	NM_001190918	exon8	c.G851A	p.R284Q	TCAAGCGGGAGCA		62	14	0.23	58	0	0		0	1	18	5	0.28			
ITGA2B	3674	mdanderson.org	37	17	42460945	42460945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_000419	exon12	c.C1126A	p.L376I	GCAGGAGGCTGGG		47	3	0.06	58	0	0				7	0	0.00			
CRHR1	1394	mdanderson.org	37	17	43898754	43898754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001145148	exon4	c.G275T	p.S92I	ATGGCAGCTGGGC		32	3	0.09	32	0	0				0	0				
.	0	broad.mit.edu	37	17	55867021	55867021	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	GAACCTCCAAACA		5	2	0.40	6	0	0				0	0				
PTPRS	5802	mdanderson.org	37	19	5212050	5212050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002850	exon32	c.C4981A	p.L1661I	CATAGAGGCTGCG		35	3	0.09	44	0	0				46	0	0.00			
MAP1S	55201	broad.mit.edu;mdanderson.org	37	19	17838362	17838362	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	MAP1S	NM_018174	exon5	c.C2169A	p.G723G	GCGTGGCCCCCGG		28	9	0.32	23	0	0		74		67	30	0.45			
KLHL26	55295	mdanderson.org	37	19	18779747	18779747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	KLHL26,NS,carcinoma,0,1	KLHL26	NM_018316	exon3	c.G1540T	p.G514W	GCCCTCGGGGGCC		18	2	0.11	19	0	0		0	1	4	2	0.50			
LOC100996307	0	broad.mit.edu	37	19	42988997	42988997	+	RNA	DEL	A	A	-	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	TTTCTTAAAAAAA		7	3	0.43	4	0	0				0	0				
ALDH16A1	126133	mdanderson.org	37	19	49971739	49971739	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_153329	exon15	c.G2040T	p.L680L	GTCCCTGCTGGCT		18	2	0.11	13	0	0				141	0	0.00			
FCGRT	2217	mdanderson.org	37	19	50028780	50028780	+	Missense_Mutation	SNP	C	C	T	rs200666118	bycluster;by1000genomes	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	FCGRT,NS,carcinoma,0,1	FCGRT	NM_004107	exon5	c.C938T	p.A313V	CGGCAGCGGCTGT		40	3	0.08	42	0	0	0	0	1	308	0	0.00			
MYH14	79784	mdanderson.org	37	19	50781397	50781397	+	Missense_Mutation	SNP	C	C	T	rs372367091		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001145809	exon30	c.C3883T	p.R1295W	GAGCTGCGGGCAG		35	3	0.09	32	0	0				10	0	0.00			
KLK7	5650	mdanderson.org	37	19	51485168	51485168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	KLK7,colon,carcinoma,+2,1	KLK7	NM_139277	exon3	c.C76A	p.Q26K	CACCCTGGGCTGG		48	3	0.06	58	1	0.0172413793		2	1	0	0				
ZNF497	162968	mdanderson.org	37	19	58867669	58867669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_198458	exon3	c.G1333T	p.A445S	AGTGGGCGCAGAC		30	3	0.10	28	0	0				2	0	0.00			
MYADML	151325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	33952333	33952333	+	RNA	SNP	G	G	A	rs77831373	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	GAGGACGGACAGC		33	9	0.27	30	0	0				0	0				
RANBP2	5903	broad.mit.edu	37	2	109382805	109382805	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	RANBP2	NM_006267	exon20	c.5810delT	p.I1937fs	GTGTGATTTTTGG		1320	7	0.01	1255	0	0		488		23	0	0.00			
EPB41L5	57669	mdanderson.org	37	2	120844774	120844774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001184938	exon11	c.G831T	p.K277N	TTTTAAGAAGAAT		48	3	0.06	56	0	0				23	0	0.00			
LCT	3938	mdanderson.org	37	2	136545926	136545926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002299	exon17	c.C5752A	p.Q1918K	CCTGTTGGCTTCG		45	3	0.07	54	0	0				2	0	0.00			
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	167085326	167085326	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_002977	exon22	c.G4048C	p.A1350P	GACTTGCAGGAAA		111	6	0.05	111	0	0				0	0				
TTN	7273	bcgsc.ca	37	2	179480494	179480494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	TTN	NM_001267550	exon258	c.C48334A	p.L16112I	ATTCTAGATCAGT		161	6	0.04	146	0	0		18412		1	0	0.00			
GULP1	51454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189452633	189452633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_016315	exon11	c.C800T	p.A267V	GAGCAGCAGATTT		289	48	0.17	317	0	0				14	4	0.29			
VSX1	30813	mdanderson.org	37	20	25060101	25060101	+	Silent	SNP	G	G	T	rs199995626	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001256271	exon2	c.C474A	p.T158T	GCCCAAGGTGGGG		52	3	0.06	60	0	0				0	0				
ZNF831	128611	mdanderson.org	37	20	57767767	57767767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_178457	exon1	c.G1693T	p.A565S	AGACAGGCCGCGG		21	2	0.10	22	0	0				0	0				
ADAMTS5	11096	mdanderson.org	37	21	28338584	28338584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_007038	exon1	c.C127A	p.P43T	GGCGGGGCTGGGC		17	2	0.12	23	0	0				0	0				
DEPDC5	9681	broad.mit.edu	37	22	32302245	32302245	+	Missense_Mutation	SNP	G	G	A	rs370366925		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	DEPDC5_ENST00000535622,NS,carcinoma,0,1	DEPDC5	NM_001242896	exon43	c.G4574A	p.R1525Q	AGCAGCGGCGGCG		193	5	0.03	178	0	0		266	1	38	2	0.05	rescued with RNA-seq		
SLC6A6	6533	hgsc.bcm.edu	37	3	14508094	14508094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	SLC6A6,NS,malignant_melanoma,0,2	SLC6A6	NM_003043	exon7	c.C803T	p.P268L	CGCTGCCGGGCGC		31	2	0.06	36	0	0		0	2	20	0	0.00			
SUCLG2	8801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	67578573	67578573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	SUCLG2_ENST00000493112,NS,carcinoma,0,3	SUCLG2_ENST00000493112	NM_001177599	exon4	c.G400A	p.G134S	TCACACCTTCTTT		72	7	0.10	75	0	0		0	3	17	6	0.35			
CHMP2B	25978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	87289878	87289878	+	Missense_Mutation	SNP	C	C	G	rs138886714	bycluster;byfrequency;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_014043	exon2	c.C64G	p.R22G	GAGTTACGAGGTA		252	52	0.21	281	0	0				81	17	0.21			
DIRC2	84925	hgsc.bcm.edu	37	3	122579034	122579034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032839	exon7	c.C1123A	p.L375I	ACACACCTACCTT		124	5	0.04	122	0	0				47	0	0.00			
PLXNA1	5361	mdanderson.org	37	3	126734047	126734047	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_032242	exon14	c.G2898T	p.V966V	CCGTGTGAGCCCC		45	3	0.07	51	0	0				12	0	0.00			
GFM1	85476	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	158376767	158376767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_024996	exon9	c.G1140T	p.K380N	AAAGAAGGGTGAC		70	5	0.07	58	0	0				42	0	0.00			
KLB	152831	bcgsc.ca	37	4	39448347	39448347	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	KLB	NM_175737	exon4	c.C2001A	p.A667A	GACGGCCGAGGCC		42	4	0.10	34	0	0		95		0	0				
BMP2K	55589	broad.mit.edu	37	4	79793947	79793947	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	BMP2K	NM_017593	exon13	c.C1788T	p.A596A	TAGTGCCAATAGG		109	5	0.05	154	0	0		169		3	0	0.00			
CYP2U1	113612	mdanderson.org	37	4	108853024	108853024	+	Silent	SNP	G	G	T	rs145192019	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_183075	exon1	c.G225T	p.V75V	TCACGTGCTGCTG		20	2	0.10	39	0	0				1	0	0.00			
TAS2R1	50834	mdanderson.org	37	5	9629567	9629567	+	Missense_Mutation	SNP	G	G	T	rs185412063	bycluster;by1000genomes	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_019599	exon1	c.C578A	p.A193D	AAAACAGCAAAAA		44	3	0.07	57	0	0	0.001			0	0				
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138713761	138713761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_152685	exon12	c.G1368A	p.M456I	GGAGTTCATGTCC		83	14	0.17	76	0	0				1	0	0.00			
PCDHB13	56123	mdanderson.org	37	5	140595340	140595340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	PCDHB13,NS,neuroblastoma,-2,1	PCDHB13	NM_018933	exon1	c.G1645T	p.V549L	GTGCGCGTGGTGG		44	3	0.07	24	0	0		-2	1	1	0	0.00			
PCDHGA9	56107	bcgsc.ca;mdanderson.org	37	5	140782626	140782626	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	PCDHGA9	NM_032089	exon1	c.C107A	p.P36H	CAGTGCCTGAAGA		103	5	0.05	78	0	0		110		0	0				
IRF4	3662	broad.mit.edu;bcgsc.ca	37	6	393255	393255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	IRF4	NM_001195286	exon2	c.G103T	p.G35C	GACAGCGGCAAGT		149	24	0.16	127	1	0.0078740157		65		5	0	0.00			
BAG6	7917	mdanderson.org	37	6	31610608	31610608	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_004639	exon14	c.C1951A	p.Q651K	TCACCTGCAAGAA		33	3	0.09	18	0	0				156	0	0.00			
DDAH2	23564	broad.mit.edu	37	6	31695404	31695404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	DDAH2	NM_013974	exon6	c.C657A	p.D219E	GAGACAGTCAGCA		71	3	0.04	54	0	0		15		162	0	0.00			
MDGA1	266727	mdanderson.org	37	6	37611668	37611668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_153487	exon14	c.C2453A	p.A818E	AACCTTGCACGGT		50	3	0.06	62	0	0				13	0	0.00			
PM20D2	135293	mdanderson.org	37	6	89862893	89862893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001010853	exon3	c.G746T	p.W249L	CAACCTGGAGAGT		45	3	0.07	45	0	0				2	0	0.00			
SOGA3	387104	mdanderson.org	37	6	127836914	127836914	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001012279	exon2	c.C846T	p.N282N	GCCGCCGTTCTTA		16	2	0.13	21	0	0				0	0				
NHSL1	57224	broad.mit.edu;mdanderson.org	37	6	138751679	138751679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	NHSL1	NM_020464	exon5	c.C3815A	p.A1272E	GATCCTGCAGCTC		50	4	0.08	48	0	0		99		13	0	0.00			
MEOX2	4223	mdanderson.org	37	7	15725827	15725827	+	Silent	SNP	C	C	A	rs374499365	alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_005924	exon1	c.G201T	p.G67G	GTGGTGCCCCCTG		53	3	0.06	38	0	0				1	0	0.00			
SEPT7P2	641977	hgsc.bcm.edu	37	7	45798636	45798636	+	RNA	SNP	A	A	G	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	.	.	.	.	ACCCCAAATACAC		45	5	0.11	40	0	0				0	0				
DGKI	9162	broad.mit.edu;mdanderson.org	37	7	137266651	137266651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	DGKI_ENST00000288490,NS,carcinoma,0,2	DGKI	NM_004717	exon15	c.C1587A	p.N529K	GAAGTAGTTATTG		50	3	0.06	44	0	0		335	2	1	0	0.00			
TRIM24	8805	mdanderson.org	37	7	138266446	138266446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_015905	exon17	c.G2723T	p.C908F	AGAAGTGTGAGCG		44	3	0.07	40	0	0				118	0	0.00			
PARP12	64761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	139756947	139756947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_022750	exon3	c.C469T	p.Q157X	AATGTTGGCAAAT		40	11	0.28	44	0	0				29	3	0.10			
LAPTM4B	55353	mdanderson.org	37	8	98817595	98817595	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_018407	exon2	c.G387T	p.V129V	TGCTGTGGTACTG		53	3	0.06	27	0	0				578	0	0.00			
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	116599271	116599271	+	Nonsense_Mutation	SNP	G	G	T	rs142472404	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_014112	exon5	c.C2657A	p.S886X	TCTCCCGATGCAG		67	9	0.13	59	0	0				1	0	0.00			
ANKRD18A	253650	mdanderson.org	37	9	38575566	38575566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_147195	exon15	c.A2871G	p.I957M	GAGTTCTATACTA		31	3	0.10	54	0	0				0	0				
APBA1	320	hgsc.bcm.edu	37	9	72064657	72064657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001163	exon10	c.G2024A	p.G675D	CCCCAGCCAGACT		88	4	0.05	75	0	0				2	0	0.00			
SEMA4D	10507	hgsc.bcm.edu;mdanderson.org	37	9	91994111	91994111	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006378	exon18	c.C2097A	p.P699P	AGGCTTGGGAGGA		60	4	0.07	67	0	0				77	0	0.00			
KIAA1958	158405	mdanderson.org	37	9	115421828	115421828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	KIAA1958,NS,carcinoma,0,1	KIAA1958	NM_133465	exon4	c.G1630T	p.A544S	TGGCAGGCAGGGT		120	5	0.04	129	0	0		0	1	7	0	0.00			
OR1L8	138881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125330483	125330485	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	TCT	TCT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	OR1L8	NM_001004454	exon1	c.273_275del	p.91_92del	AGATGGTCTTCTT		54	10	0.19	68	0	0		90		0	0				
GFI1B	8328	mdanderson.org	37	9	135866307	135866307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_004188	exon7	c.G863T	p.S288I	GCCAGAGCTCCAA		45	3	0.07	58	0	0				0	0				
RALGDS	5900	mdanderson.org	37	9	135984157	135984157	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_006266	exon5	c.C681A	p.Y227X	CTGCACGTAGGCC		38	3	0.08	47	0	0				29	0	0.00			
CT47B1	643311	mdanderson.org	37	X	120009259	120009259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG0-01A-11D-A42Y-10	TCGA-2G-AAG0-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37419ab1-477a-401f-9102-079a57e05b6b	394fde22-74c9-4c8f-9c07-2b22933c92a7	.	.	NM_001145718	exon1	c.C266A	p.P89H	GTCGCGGGCCCGA		37	3	0.08	28	0	0				0	0