Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ALDH4A1 8659 hgsc.bcm.edu;mdanderson.org 37 1 19209815 19209815 + Missense_Mutation SNP G G T rs199723895 by1000genomes;alternate_allele TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_003748 exon6 c.C561A p.S187R GGGCACGCTGATG 54 4 0.07 68 0 0 31 0 0.00 CSMD2 114784 mdanderson.org 37 1 34164479 34164479 + Missense_Mutation SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_052896 exon24 c.G3679T p.G1227C AATGACCTTCATC 50 3 0.06 45 0 0 0 0 SZT2 23334 mdanderson.org 37 1 43908278 43908278 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 SZT2_ENST00000562955,NS,carcinoma,0,6 SZT2_ENST00000562955 NM_015284 exon57 c.C7969T p.R2657X CCCGTGCGAGATG 31 3 0.10 36 0 0 0 6 42 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145116193 145116193 + RNA DEL G G - novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . CTGGCTGGGGCAT 8 3 0.38 4 0 0 167 0 0.00 OBSCN 84033 hgsc.bcm.edu 37 1 228465295 228465295 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001271223 exon29 c.G7969T p.E2657X CACGACGAAGTGC 76 23 0.30 72 0 0 8 0 0.00 CCDC6 8030 broad.mit.edu 37 10 61666054 61666054 + Silent SNP A A C novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . CCDC6 NM_005436 exon1 c.T129G p.G43G CTTCCCACCGCCG 33 10 0.30 23 7 0.3043478261 44 7 0 0.00 PIPSL 0 broad.mit.edu 37 10 95718367 95718369 + RNA DEL TTC TTC - novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 TTC TTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . TTTTCTTTCTTTC 14 6 0.43 10 0 0 0 0 WNT8B 7479 mdanderson.org 37 10 102242036 102242036 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_003393 exon6 c.G519T p.K173N GGTGAAGGGCACC 9 2 0.22 9 0 0 0 0 SORCS1 114815 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 108338921 108338921 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . SORCS1 NM_001206572 exon26 c.C3460A p.P1154T CATTGGGCCTGCT 110 7 0.06 95 1 0.0105263158 534 4 0 0.00 EMX2 2018 broad.mit.edu 37 10 119303017 119303017 + Missense_Mutation SNP A A C novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 EMX2,NS,carcinoma,0,1 EMX2 NM_001165924 exon1 c.A239C p.N80T CGCCCAACCCCGC 68 24 0.35 58 9 0.1551724138 25 1 11 1 0.09 CTBP2 1488 bcgsc.ca 37 10 126678129 126678129 + Silent SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . CTBP2 NM_022802 exon9 c.C2916A p.P972P TTTTGTGGGCTGG 62 4 0.06 56 0 0 100 262 0 0.00 ODF3 113746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 199447 199447 + Missense_Mutation SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 ODF3,face,carcinoma,0,1 ODF3 NM_053280 exon6 c.C613A p.R205S GCTGCCCGTGTGG 88 37 0.42 89 0 0 0 1 0 0 MUC6 4588 bcgsc.ca 37 11 1016871 1016871 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . MUC6 NM_005961 exon31 c.C5930A p.P1977H GAGAAGGGACTGC 277 12 0.04 337 4 0.0118694362 408 1 0 0.00 MUC2 4583 mdanderson.org 37 11 1092966 1092966 + Silent SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_002457 exon30 c.C4785A p.T1595T CCCAACCCCAACA 31 2 0.06 30 1 0.0333333333 17 1 0.06 FOLH1 2346 bcgsc.ca 37 11 49204790 49204790 + Silent SNP A A G rs76509850 bycluster;byfrequency TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . FOLH1 NM_004476 exon7 c.T831C p.Y277Y ATAAGCATATTCT 113 6 0.05 136 2 0.0147058824 141 9 0 0.00 . 0 bcgsc.ca 37 11 62815368 62815368 + RNA SNP G G A rs7125680 bycluster;byfrequency;by2hit2allele;byhapmap TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . GGTGCAGCATGCC 30 8 0.27 24 0 0 0 0 ATG2A 23130 mdanderson.org 37 11 64662838 64662838 + Missense_Mutation SNP G G T rs370496305 alternate_allele TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_015104 exon40 c.C5504A p.A1835E CTCCGCGCAGAGC 34 3 0.09 53 0 0 39 0 0.00 ATG2A 23130 mdanderson.org 37 11 64677638 64677638 + Silent SNP A A G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_015104 exon13 c.T1737C p.H579H GTGGCAATGGCAG 42 3 0.07 52 0 0 34 0 0.00 PCNXL3 399909 mdanderson.org 37 11 65394937 65394937 + Missense_Mutation SNP C C T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_032223 exon22 c.C3586T p.P1196S TGCTGCCCCCCAC 50 3 0.06 69 0 0 39 0 0.00 YIF1A 10897 mdanderson.org 37 11 66052939 66052939 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 YIF1A,face,carcinoma,0,1 YIF1A NM_020470 exon6 c.C554A p.A185D AGCAGGGCCAGCA 54 5 0.09 44 0 0 0 1 132 0 0.00 PRB2 653247 broad.mit.edu 37 12 11546214 11546214 + Silent SNP T T G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . PRB2 NM_006248 exon3 c.A798C p.P266P TGGGGGTGGTCCT 596 41 0.07 240 16 0.0666666667 168 0 0 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 25380276 25380276 + Missense_Mutation SNP T T C rs121913240 bycluster TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 KRAS_ENST00000256078,colon,carcinoma,+1,429 KRAS_ENST00000256078 NM_004985 exon3 c.A182G p.Q61R TCCTCTTGACCTG 193 14 0.07 87 0 0 1 429 125 3 0.02 RAPGEF3 10411 mdanderson.org 37 12 48141588 48141588 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001098531 exon14 c.C1380A p.N460K CCTCTTGTTGCAG 25 2 0.08 33 0 0 13 0 0.00 FAM186A 121006 broad.mit.edu 37 12 50746811 50746811 + Silent SNP A A G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . FAM186A NM_001145475 exon4 c.T3804C p.T1268T CTGAGGAGTAAGA 109 6 0.06 85 1 0.0117647059 181 0 0 EIF4B 1975 mdanderson.org 37 12 53416289 53416289 + Missense_Mutation SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 EIF4B,NS,carcinoma,0,1 EIF4B NM_001417 exon6 c.G545A p.R182H ATGATCGTTCTTT 79 4 0.05 77 0 0 0 1 576 0 0.00 MMP19 4327 mdanderson.org 37 12 56232401 56232401 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_002429 exon6 c.C884A p.A295D ATCATGGCATCCA 45 3 0.07 46 0 0 19 0 0.00 AVIL 10677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 58204191 58204191 + Missense_Mutation SNP C C G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_006576 exon6 c.G702C p.K234N TGTAGGCTTGATA 154 51 0.33 138 0 0 2 1 0.50 DPY19L2 283417 bcgsc.ca 37 12 63964599 63964600 + Missense_Mutation DNP TG TG CA novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 TG TG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . DPY19L2 NM_173812 exon20 c.C1938T p.I647V GCTTGATGCTTGC 207 14 0.07 199 2 0.0100502513 97 22 0 0.00 VPS33A 65082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 122734429 122734429 + Missense_Mutation SNP C C T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_022916 exon6 c.G764A p.G255D TGAATGCCATAAA 80 28 0.35 75 0 0 49 4 0.08 RILPL1 353116 mdanderson.org 37 12 123968738 123968738 + Silent SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_178314 exon6 c.C1056A p.G352G CTTGATGCCCGAC 22 2 0.09 14 0 0 42 0 0.00 SCARB1 949 mdanderson.org 37 12 125263108 125263108 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001082959 exon12 c.C1426A p.P476T GGCCTGGCTGGCT 46 3 0.07 38 0 0 53 0 0.00 ADPRHL1 113622 mdanderson.org 37 13 114088091 114088091 + Silent SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 ADPRHL1,caecum,carcinoma,-2,1 ADPRHL1 NM_138430 exon3 c.G471T p.V157V GCACTCCACGCTG 40 3 0.08 58 0 0 -2 1 3 0 0.00 ADAM21P1 0 broad.mit.edu 37 14 70713782 70713782 + RNA SNP A A G rs200469187 TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . CCAGCAAATTTTG 112 10 0.09 91 2 0.021978022 0 0 BCL11B 64919 mdanderson.org 37 14 99641120 99641120 + Missense_Mutation SNP C C T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 BCL11B,NS,carcinoma,0,1 BCL11B NM_138576 exon4 c.G2053A p.A685T GCTTGGCGGCGCT 30 3 0.10 13 0 0 0 1 1 0 0.00 PACS2 23241 mdanderson.org 37 14 105858990 105858990 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001100913 exon23 c.G2290T p.V764L CTGCAGGTGGACT 53 3 0.06 31 0 0 71 0 0.00 RAD51 5888 mdanderson.org 37 15 41021794 41021794 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001164269 exon8 c.G739T p.A247S CACTTGGCCAGGT 67 4 0.06 71 0 0 186 0 0.00 RPAP1 26015 mdanderson.org 37 15 41817286 41817286 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 RPAP1,NS,carcinoma,+2,1 RPAP1 NM_015540 exon15 c.C1978A p.L660M AGGCCAGTTCTTG 50 3 0.06 56 1 0.0178571429 2 1 47 0 0.00 CSPG4 1464 mdanderson.org 37 15 75979730 75979730 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001897 exon3 c.C3676A p.L1226I CTTGTAGGGTGGC 52 3 0.06 59 0 0 44 0 0.00 ACSM2B 348158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 20556521 20556521 + Missense_Mutation SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_182617 exon11 c.G1239T p.R413S TTTGACCCTGATG 63 20 0.32 94 0 0 0 0 LOC100132247 0 bcgsc.ca 37 16 22545897 22545897 + Missense_Mutation SNP G G T rs143579045 bycluster TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 RP11-368J21.2_ENST00000424340,NS,carcinoma,0,4 . NM_001135865 exon7 c.G1593T p.K531N TATCAAGACACCT 42 6 0.14 35 2 0.0571428571 4 187 17 0.09 MYBBP1A 10514 mdanderson.org 37 17 4445103 4445103 + Silent SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 MYBBP1A,bladder,carcinoma,-2,1 MYBBP1A NM_014520 exon23 c.C3171A p.G1057G GACCTGGCCCATC 52 3 0.06 53 0 0 -2 1 109 0 0.00 PELP1 27043 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 4574813 4574813 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . PELP1 NM_014389 exon17 c.C3314A p.T1105K GCAGCTGTGTCAT 44 4 0.09 46 0 0 102 176 0 0.00 DNAH9 1770 mdanderson.org 37 17 11833287 11833287 + Silent SNP A A T rs2286303 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001372 exon63 c.A11982T p.P3994P AGAGCCAGCACCC 104 4 0.04 120 0 0 3 0 0.00 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 153 11 0.07 200 10 0.05 24 18 0.75 KIAA0100 9703 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 26964994 26964994 + Missense_Mutation SNP C C T rs200349785 TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . KIAA0100 NM_014680 exon14 c.G1631A p.R544H AAGATACGAGACA 41 4 0.10 50 0 0 175 83 0 0.00 ANKFN1 162282 mdanderson.org 37 17 54450048 54450048 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_153228 exon6 c.G652T p.V218F ACACTGGTCCAGG 41 3 0.07 38 0 0 0 0 ERN1 2081 mdanderson.org 37 17 62133223 62133223 + Missense_Mutation SNP T T A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001433 exon13 c.A1484T p.Q495L GGCAGCTGCTGCT 44 4 0.09 35 1 0.0285714286 11 0 0.00 CEP76 79959 mdanderson.org 37 18 12702538 12702538 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001271989 exon1 c.C10A p.P4T CCGGAGGCAGCGA 41 3 0.07 43 0 0 17 0 0.00 LOC644669 0 broad.mit.edu 37 18 15326266 15326284 + RNA DEL ACCTTCTAGCTATCACTTA ACCTTCTAGCTATCACTTA - novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 ACCTTCTAGCTATCACTTA ACCTTCTAGCTATCACTTA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . TCTTTCACCTTCT 6 2 0.33 5 0 0 0 0 ILF3 3609 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 10798137 10798137 + Silent SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_017620 exon18 c.G2187A p.P729P CTCACCGGTGCCC 114 14 0.12 117 0 0 315 67 0.21 RGL3 57139 mdanderson.org 37 19 11512712 11512712 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001035223 exon13 c.C1459A p.Q487K GGTTCTGGGCATG 45 3 0.07 52 0 0 8 0 0.00 FAM98C 147965 mdanderson.org 37 19 38893809 38893809 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_174905 exon1 c.G16T p.A6S GTGAAGGCGGAAG 12 3 0.25 9 0 0 7 0 0.00 IL4I1 259307 mdanderson.org 37 19 50393222 50393222 + Missense_Mutation SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_172374 exon10 c.C1475T p.T492M GGGACCGTCCAGT 51 3 0.06 50 0 0 76 0 0.00 . 0 bcgsc.ca 37 2 6636082 6636082 + RNA SNP G G T rs306191 bycluster TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . GGCTTCGTTAAAC 42 4 0.10 36 0 0 0 0 ATL2 64225 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 38527452 38527452 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001135673 exon10 c.C1090T p.Q364X CTCCTTGATAGAT 24 6 0.25 25 0 0 46 6 0.13 ANKRD20A8P 0 broad.mit.edu 37 2 95514650 95514651 + RNA INS - - A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . CCATCTCAAAAAA 8 5 0.63 6 0 0 0 0 TMEM182 130827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 103380804 103380804 + Silent SNP C C G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_144632 exon3 c.C249G p.S83S ACCGTCCAAGAAC 88 30 0.34 100 0 0 20 6 0.30 KCNE4 23704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 223918008 223918008 + Missense_Mutation SNP C C T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_080671 exon2 c.C613T p.P205S GAGACGCCCCTCA 129 34 0.26 92 0 0 39 10 0.26 TIGD1 200765 broad.mit.edu 37 2 233414313 233414313 + Missense_Mutation SNP T T G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 TIGD1,NS,carcinoma,0,1 TIGD1 NM_145702 exon1 c.A280C p.T94P GGCTGGTCTGATC 25 10 0.40 22 4 0.1818181818 17 1 13 4 0.31 INSM1 3642 broad.mit.edu 37 20 20350192 20350192 + Frame_Shift_Del DEL G G - novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . INSM1 NM_002196 exon1 c.1281delG p.E427fs CGGCGAGGGGGCC 6 2 0.33 6 0 0 17 0 0 . 0 broad.mit.edu 37 22 18843613 18843613 + RNA DEL G G - novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . GAGGCAGGGGCGG 16 3 0.19 13 0 0 1 0 0.00 CARD10 29775 mdanderson.org 37 22 37912202 37912202 + Silent SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_014550 exon3 c.C477A p.A159A GCCCCGGGCCTGC 42 3 0.07 41 0 0 31 0 0.00 TSEN2 80746 broad.mit.edu 37 3 12544861 12544861 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . TSEN2 NM_001145394 exon5 c.G409T p.E137X CCGCTTGAGCATC 106 4 0.04 127 0 0 46 32 0 0.00 . 152110 broad.mit.edu;ucsc.edu 37 3 27157448 27157448 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . AAAATTGTAATAG 344 126 0.37 431 1 0.0023201856 2 1 0.50 CMTM6 54918 mdanderson.org 37 3 32544117 32544117 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_017801 exon1 c.C121A p.L41I CCTTGAGAACGCG 23 3 0.13 22 0 0 40 0 0.00 VPS8 23355 mdanderson.org 37 3 184682325 184682325 + Missense_Mutation SNP G G T rs373762204 alternate_allele TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001009921 exon37 c.G3253T p.A1085S CATGGTGCCTTCC 52 3 0.06 48 0 0 18 0 0.00 DGKQ 1609 mdanderson.org 37 4 960807 960807 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001347 exon10 c.C1256A p.P419Q CTCTTCGGGGTCA 26 2 0.08 35 0 0 12 0 0.00 HGFAC 3083 broad.mit.edu 37 4 3443798 3443800 + In_Frame_Del DEL CTG CTG - novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 CTG CTG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . HGFAC NM_001528 exon1 c.70_72del p.24_24del CTCCTCCTGCTGC 6 2 0.33 8 0 0 69 0 0 KIAA1109 84162 bcgsc.ca;mdanderson.org 37 4 123120533 123120533 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . KIAA1109 NM_015312 exon12 c.G1308T p.K436N TATTAAGGGACAA 72 5 0.07 78 0 0 424 5 0 0.00 ZDHHC11 79844 ucsc.edu 37 5 840644 840644 + Missense_Mutation SNP G G C rs200038670 bycluster TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . ZDHHC11 NM_024786 exon5 c.C750G p.H250Q GCCCAGGTGCACC 28 6 0.21 34 1 0.0294117647 97 6 2 0.33 ZDHHC11 79844 ucsc.edu 37 5 840704 840704 + Silent SNP G G A rs139300052 TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . ZDHHC11 NM_024786 exon5 c.C690T p.T230T TATCAGGGTCTGC 31 6 0.19 36 1 0.0277777778 97 2 2 1.00 JARID2 3720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 15374463 15374463 + Missense_Mutation SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_004973 exon2 c.G161A p.G54E TTGCTGGGAGCCT 102 27 0.26 91 0 0 19 7 0.37 VARS2 57176 bcgsc.ca 37 6 30890754 30890754 + Splice_Site SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . VARS2 NM_020442 exon23 c.2185+1G>T . TTCAGGGTAAGCC 150 6 0.04 92 1 0.0108695652 60 0 0 RUNX2 860 mdanderson.org 37 6 45390498 45390498 + Missense_Mutation SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001024630 exon3 c.C227A p.A76E CGGCGGCGGCTGC 16 2 0.13 9 0 0 1 0 0.00 C6orf165 154313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 88119658 88119658 + Missense_Mutation SNP C C G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001031743 exon2 c.C101G p.A34G TGATTGCTTTTAT 23 10 0.43 53 0 0 12 7 0.58 SERINC1 57515 mdanderson.org 37 6 122773072 122773072 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_020755 exon6 c.C720A p.C240X ACCAACGCAGAGG 50 3 0.06 44 0 0 201 0 0.00 VNN1 8876 broad.mit.edu;mdanderson.org 37 6 133013412 133013412 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . VNN1 NM_004666 exon5 c.C1138A p.L380I CCCCTAGAGCGTA 80 5 0.06 121 0 0 69 1 0 0.00 FLJ35390 0 broad.mit.edu 37 7 44080453 44080453 + RNA SNP G G A rs116887274 byfrequency;by1000genomes TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . . . . . GCAGCCGGGACAC 33 8 0.24 40 1 0.025 1 0 0.00 MUC17 140453 hgsc.bcm.edu 37 7 100682117 100682117 + Missense_Mutation SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 MUC17,right_upper_lobe,carcinoma,-2,1 MUC17 NM_001040105 exon3 c.G7420A p.G2474S GAGGCTGGCACCC 104 6 0.06 82 0 0 -2 1 0 0 EBAG9 9166 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 110569202 110569202 + Silent SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_004215 exon5 c.C360A p.I120I TGGCATCCCAGAT 158 37 0.23 100 0 0 111 26 0.23 ZHX1 11244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 124267671 124267671 + Silent SNP A A G novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_007222 exon3 c.T516C p.S172S CGAAGAAGAAACT 139 30 0.22 74 0 0 21 4 0.19 PPP1R16A 84988 mdanderson.org 37 8 145726559 145726559 + Missense_Mutation SNP G G T novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_032902 exon9 c.G1085T p.R362L TGTACCGCAAGCA 35 3 0.09 13 0 0 70 0 0.00 GPR144 347088 mdanderson.org 37 9 127217258 127217258 + Missense_Mutation SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_001161808 exon7 c.G1301A p.R434H TTGTCCGCTTCCT 23 2 0.09 34 0 0 0 0 ND2 0 hgsc.bcm.edu 37 MT 4492 4492 + Missense_Mutation SNP T T C rs201172504 bycluster;alternate_allele TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . ENST00000361453 exon1 c.T23C p.V8A AACCCGTCATCTA 18 9 0.50 15 0 0 0 0 ARMCX5 64860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101857554 101857554 + Missense_Mutation SNP C C A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 . . NM_022838 exon3 c.C485A p.S162Y TGAAATCCAGTGA 153 80 0.52 84 0 0 45 20 0.44 SHANK2 22941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 70653201 70653201 + Silent SNP G G A novel TCGA-2G-AAG3-01A-11D-A42Y-10 TCGA-2G-AAG3-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq edec0ae4-0d21-40ef-87fb-9bf99b9d20d3 aee66dc1-135a-44d7-8f3d-b4e02426e898 SHANK2_ENST00000338508,colon,carcinoma,-1,1 SHANK2_ENST00000338508 . . . . GGCACTGTAGAGC 77 7 0.09 88 0 0 -1 1 4 1 0.25