Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PANK4	55229	hgsc.bcm.edu;bcgsc.ca	37	1	2453203	2453203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_018216	exon2	c.T161C	p.V54A	TGCTGTACCGTTG		69	4	0.06	66	0	0				25	0	0.00			
CLCN6	1185	mdanderson.org	37	1	11884555	11884555	+	Missense_Mutation	SNP	A	A	T	rs198400	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001286	exon8	c.A593T	p.E198V	TCGTGGAGAAGGA		66	3	0.05	54	0	0				7	0	0.00			
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	16254718	16254718	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_015001	exon11	c.G1983A	p.W661X	AGAATGGGAAACT		126	36	0.29	140	0	0				8	3	0.38			
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	AACTTACTGTTGT		34	5	0.15	35	0	0				1	0	0.00			
CAMK2N1	55450	mdanderson.org	37	1	20811816	20811816	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_018584	exon1	c.C57T	p.G19G	CACGTCGCCGCCG		38	3	0.08	44	0	0				4	0	0.00			
UBXN11	91544	mdanderson.org	37	1	26624522	26624522	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_183008	exon6	c.C231A	p.A77A	CATGAAGGCCATC		46	3	0.07	61	0	0				22	0	0.00			
TCHHL1	126637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152057679	152057679	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001008536	exon3	c.G2479C	p.A827P	CCTGGGCTATCTG		182	9	0.05	209	0	0				0	0				
LCE3C	353144	mdanderson.org	37	1	152573341	152573341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_178434	exon1	c.G134T	p.G45V	GCTGTGGCCCCAG		42	3	0.07	67	0	0				0	0				
ARHGAP30	257106	mdanderson.org	37	1	161026274	161026274	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_181720	exon3	c.C249A	p.Y83X	TTGGAGGTAAACA		73	4	0.05	67	0	0				2	0	0.00			
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578004	1578005	+	RNA	DNP	TC	TC	CT	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	CTGAGTTCCCTTG		69	6	0.09	124	0	0				0	0				
FBXO18	84893	mdanderson.org	37	10	5951128	5951128	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032807	exon6	c.A1044G	p.T348T	ATACACAGCCACC		21	3	0.14	36	0	0				21	0	0.00			
TYSND1	219743	bcgsc.ca;mdanderson.org	37	10	71905784	71905784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	TYSND1	NM_001040273	exon1	c.C559A	p.L187M	CCAGCAGCGCAAA		58	5	0.09	75	0	0		20		18	0	0.00			
FFAR4	338557	mdanderson.org	37	10	95326496	95326496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001195755	exon1	c.C19T	p.R7W	TGCGCGCGGGCAG		33	3	0.09	39	0	0				0	0				
BLNK	29760	ucsc.edu	37	10	97987208	97987208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	BLNK	NM_001114094	exon5	c.C319A	p.P107T	GAACCGGCCTGGT		42	4	0.10	68	0	0		46		0	0				
GPAM	57678	mdanderson.org	37	10	113924339	113924339	+	Silent	SNP	C	C	T	rs140253495	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	GPAM,NS,carcinoma,-1,1	GPAM	NM_020918	exon13	c.G1251A	p.P417P	AGACACCGGTTTC		51	3	0.06	96	0	0		-1	1	8	0	0.00			
TCERG1L	256536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133106529	133106529	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	TCERG1L,colon,carcinoma,-2,4	TCERG1L	NM_174937	exon3	c.G615A	p.P205P	AGGAGCCGGCCTG		112	48	0.43	171	0	0		-2	4	9	7	0.78			
NLRP6	171389	bcgsc.ca	37	11	279526	279526	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	NLRP6	NM_138329	exon2	c.G229T	p.A77S	GAGCCTGCCCTGG		16	4	0.25	25	0	0		4		0	0				
ATHL1	80162	mdanderson.org	37	11	292550	292550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_025092	exon6	c.C1031T	p.A344V	AGGGAGCCAAGTT		35	3	0.09	67	0	0				17	0	0.00			
MICAL2	9645	mdanderson.org	37	11	12244987	12244987	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_014632	exon12	c.G1479T	p.L493L	GGAGCTGGAGCAC		50	3	0.06	73	0	0				1	0	0.00			
RAB3IL1	5866	mdanderson.org	37	11	61674072	61674072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_013401	exon5	c.C523A	p.P175T	GCTGGGGGTGAAG		31	3	0.10	38	0	0				8	0	0.00			
SYT12	91683	mdanderson.org	37	11	66802170	66802170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_177963	exon3	c.C89A	p.A30D	CCCTGGCCCTGCT		40	3	0.08	47	0	0				2	0	0.00			
DLG2	1740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	83180284	83180284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001142699	exon25	c.A2579G	p.Y860C	GTTCCATATAAAT		134	48	0.36	173	0	0				5	2	0.40			
SIK3	23387	mdanderson.org	37	11	116746687	116746687	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_025164	exon9	c.C960A	p.I320I	GCTGTAGATTGCA		17	2	0.12	47	0	0				8	0	0.00			
NCKAP5L	57701	mdanderson.org	37	12	50190598	50190598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001037806	exon8	c.C1045A	p.P349T	TGAGTGGGCCTGC		33	3	0.09	42	0	0				10	0	0.00			
FOXN4	121643	broad.mit.edu	37	12	109719430	109719430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	FOXN4	NM_213596	exon9	c.T1076C	p.V359A	AGGGGGACTGACT		117	6	0.05	118	1	0.0084745763		74		0	0				
NOC4L	79050	mdanderson.org	37	12	132632512	132632512	+	Missense_Mutation	SNP	G	G	T	rs149306359	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_024078	exon6	c.G691T	p.V231L	TTCTATGTGAAGC		48	3	0.06	56	1	0.0178571429				89	0	0.00			
TPTE2	93492	broad.mit.edu;mdanderson.org	37	13	20025336	20025336	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	TPTE2	NM_199254	exon12	c.T771C	p.H257H	GTTTCGATGTTTC		51	8	0.16	55	0	0		225		0	0				
HMGB1	3146	broad.mit.edu	37	13	31035512	31035512	+	Missense_Mutation	SNP	T	T	A	rs79036453		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	HMGB1	NM_002128	exon5	c.A630T	p.E210D	ATCATCTTCTTCT		40	3	0.08	58	0	0		21		752	3	0.00			
TECPR2	9895	mdanderson.org	37	14	102963955	102963955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_014844	exon19	c.G3980T	p.R1327L	GGGCCCGCTGTCC		47	3	0.06	46	0	0				14	0	0.00			
LOC727924	0	broad.mit.edu	37	15	22332492	22332492	+	RNA	SNP	A	A	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	TCTCTTATTACTA		55	3	0.05	47	0	0				0	0				
.	0	broad.mit.edu	37	15	62538522	62538523	+	RNA	INS	-	-	GA	rs370506651	bycluster	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	GCTCCGGGTAGGG		7	2	0.29	3	0	0				0	0				
TICRR	90381	mdanderson.org	37	15	90168927	90168927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_152259	exon20	c.G5386T	p.D1796Y	AGAGAAGATTCAG		58	4	0.07	56	0	0				50	0	0.00			
ZNF646	9726	mdanderson.org	37	16	31087950	31087950	+	Missense_Mutation	SNP	G	G	T	rs143373931	bycluster;byfrequency	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	ZNF646,right_lower_lobe,carcinoma,0,1	ZNF646	NM_014699	exon2	c.G305T	p.R102L	AGGGCCGCCGCAG		31	3	0.10	22	0	0		0	1	11	0	0.00			
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69368744	69368744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032382	exon3	c.G1093T	p.G365C	ACTGACCCCGGAA		76	16	0.21	77	0	0				42	7	0.17			
DBNDD1	79007	mdanderson.org	37	16	90075739	90075739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_024043	exon2	c.G191A	p.G64D	GGGATGCCCCCGA		40	3	0.08	41	0	0				22	0	0.00			
LRRC37BP1	0	broad.mit.edu	37	17	28961033	28961033	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	CCAGGATATGACT		100	4	0.04	86	0	0				21	0	0.00			
STAC2	342667	bcgsc.ca	37	17	37381749	37381749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	STAC2	NM_198993	exon1	c.G7A	p.E3K	TCATCTCGGTCAT		39	4	0.10	32	0	0		47		1	0	0.00			
LOC100505782	100505782	ucsc.edu	37	17	39566191	39566191	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	CAGAATCTGGGGT		13	4	0.31	12	0	0				0	0				
CDC27	996	hgsc.bcm.edu	37	17	45216115	45216115	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.A1712T	p.N571I	GGCGAATTTTTAT		33	3	0.09	60	0	0		0	2	53	0	0.00			
USP32	84669	mdanderson.org	37	17	58303401	58303401	+	Silent	SNP	G	G	A	rs76017156	bycluster;byfrequency;by1000genomes	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032582	exon13	c.C1431T	p.S477S	TTTACCGCTGCCA		56	3	0.05	61	0	0	0.002			54	0	0.00			
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	65890193	65890193	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	BPTF_ENST00000335221,caecum,carcinoma,0,4	BPTF_ENST00000335221	NM_004459	exon9	c.G2833T	p.E945X	CCCAGAGAATTTG		82	23	0.28	59	0	0		0	4	21	3	0.14			
PARD6G-AS1	100130522	hgsc.bcm.edu	37	18	77920329	77920329	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	CTGGGTGTGCATG		79	5	0.06	85	0	0				0	0				
ARRDC5	645432	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4891239	4891239	+	Missense_Mutation	SNP	G	G	T	rs2297506	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	ARRDC5	NM_001080523	exon3	c.C848A	p.T283K	TCCTGCGTGCTGC		42	4	0.10	56	0	0		19		0	0				
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11833770	11833770	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	ZNF823_ENST00000341191,colon,carcinoma,-1,2	ZNF823_ENST00000341191	NM_001080493	exon4	c.A579G	p.K193K	CTTACATTTATAA		106	33	0.31	108	0	0		-1	2	6	4	0.67			
SUGP2	10147	hgsc.bcm.edu	37	19	19135472	19135472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	SUGP2,NS,carcinoma,0,1	SUGP2	NM_014884	exon3	c.C1685A	p.T562K	GGTTTCGTAGGAG		46	2	0.04	74	0	0		0	1	55	0	0.00			
CEBPA	1050	broad.mit.edu;mdanderson.org	37	19	33792544	33792544	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	CEBPA	NM_004364	exon1	c.G777T	p.A259A	GGGGTGCGCGGCG		11	8	0.73	15	0	0		986		1	0	0.00			
ZNF30	90075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35434283	35434283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001099438	exon5	c.A416G	p.H139R	TTCAACATGAAAG		136	38	0.28	157	0	0				2	1	0.50			
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39057585	39057585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	RYR1,caecum,carcinoma,+1,1	RYR1	NM_000540	exon92	c.C13472T	p.P4491L	CAGAGCCAGAGCC		42	12	0.29	35	0	0		1	1	38	6	0.16			
EGLN2	112398	mdanderson.org	37	19	41306600	41306600	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_080732	exon2	c.C123A	p.P41P	CCTGCCCTGTCCC		37	3	0.08	45	0	0				79	0	0.00			
FLT3LG	2323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49979435	49979435	+	Missense_Mutation	SNP	G	G	C	rs367551792	alternate_allele	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001204503	exon3	c.G178C	p.V60L	GTCACCGTGGCCT		49	13	0.27	45	0	0				4	0	0.00			
FAM71E2	284418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55870578	55870578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001145402	exon9	c.C1658T	p.P553L	GCAGGCGGGCTCA		60	18	0.30	97	0	0				0	0				
MSH2	4436	mdanderson.org	37	2	47643474	47643474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	MSH2,caecum,carcinoma,-2,2	MSH2	NM_000251	exon6	c.G982T	p.A328S	CTGGCTGCCTTGC		44	3	0.07	66	0	0		-2	2	301	2	0.01			
DCTN1	1639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74592776	74592776	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_004082	exon25	c.G2895C	p.E965D	ACTTAGCTCCTCT		90	19	0.21	79	0	0				377	81	0.21			
KDM3A	55818	mdanderson.org	37	2	86711213	86711213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001146688	exon19	c.G3026T	p.C1009F	TTAATTGTAGGAC		106	5	0.05	86	0	0				56	0	0.00			
STAU1	6780	mdanderson.org	37	20	47734337	47734337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_017453	exon11	c.C1486A	p.L496I	TGGAAAGATAGTC		20	2	0.10	31	0	0				143	0	0.00			
LOC284757	0	broad.mit.edu	37	20	58883399	58883400	+	RNA	INS	-	-	T	rs11408280	bycluster;by1000genomes	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	CGGGAAACAGATG		10	9	0.90	7	0	0				0	0				
SON	6651	hgsc.bcm.edu	37	21	34927489	34927489	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	SON_ENST00000300278,NS,carcinoma,0,2	SON_ENST00000300278	NM_032195	exon3	c.G5952C	p.R1984R	CCGCCGGAGCCGC		13	3	0.23	16	0	0		0	2	31	0	0.00			
TMEM211	255349	mdanderson.org	37	22	25334150	25334150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001001663	exon2	c.C93A	p.S31R	AACACTGCTTCTC		36	3	0.08	52	0	0				0	0				
CSPG5	10675	broad.mit.edu	37	3	47619395	47619395	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	CSPG5	NM_006574	exon2	c.121delG	p.E41fs	CGGCCTCAACCGC		6	2	0.33	6	0	0		46		2	0	0.00			
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52443757	52443757	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	BAP1	NM_004656	exon2	c.41delT	p.L14fs	TGAAGAGGCCTGG		51	17	0.33	42	0	0		371		25	0	0.00			
TP63	8626	mdanderson.org	37	3	189586427	189586427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001114979	exon8	c.G1051T	p.D351Y	GGAAGAGACAGGA		87	5	0.06	69	0	0				1	0	0.00			
GRK4	2868	mdanderson.org	37	4	2990561	2990561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001004057	exon3	c.G256T	p.A86S	TTGGATGCAGTGG		31	3	0.10	54	0	0				0	0				
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	4304033	4304033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_145291	exon3	c.T470C	p.L157P	ATTTACTGCAGGA		137	11	0.08	169	0	0				4	0	0.00			
CC2D2A	57545	bcgsc.ca	37	4	15539540	15539540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	CC2D2A	NM_001080522	exon17	c.A1783G	p.R595G	AAGAAAAGGAAAC		59	4	0.07	87	0	0		158		7	0	0.00			
FAT4	79633	ucsc.edu	37	4	126329610	126329610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	FAT4	NM_024582	exon4	c.G5581T	p.A1861S	TTGGTAGCAGCCA		38	4	0.11	51	0	0		1752		1	0	0.00			
GALNTL6	442117	mdanderson.org	37	4	172735869	172735869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001034845	exon2	c.G138T	p.Q46H	GCAGCAGGTAAGT		41	3	0.07	56	0	0				1	0	0.00			
NSUN2	54888	mdanderson.org	37	5	6623369	6623369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_017755	exon5	c.C495A	p.S165R	GATCATGCTAACA		53	4	0.08	75	0	0				83	0	0.00			
C7	730	mdanderson.org	37	5	40955571	40955571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_000587	exon10	c.G1176T	p.E392D	CCTAGAGCTGGAC		48	3	0.06	72	0	0				6	0	0.00			
NBPF22P	0	broad.mit.edu	37	5	85589184	85589185	+	RNA	INS	-	-	CTT	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	GCACTCACTTATT		184	9	0.05	292	4	0.0136986301				0	0				
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140784930	140784930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032089	exon1	c.C2411A	p.T804N	AAGACACCCCTTT		83	27	0.33	111	0	0				1	1	1.00			
NSD1	64324	mdanderson.org	37	5	176665473	176665473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_022455	exon7	c.C4157T	p.A1386V	GGCCTGCCCTTGA		45	3	0.07	43	0	0				42	0	0.00			
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26027303	26027303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_003544	exon1	c.A178G	p.K60E	ACACCTTGAGAAC		112	39	0.35	128	0	0				0	0				
TEAD3	7005	mdanderson.org	37	6	35445113	35445113	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_003214	exon8	c.G567A	p.Q189Q	GGGCGGCTGGATG		24	2	0.08	32	0	0				14	0	0.00			
TTBK1	84630	mdanderson.org	37	6	43221327	43221327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_032538	exon5	c.C352T	p.R118C	GACCTGCGCCGTA		31	3	0.10	25	0	0				0	0				
PTCHD4	442213	mdanderson.org	37	6	47847374	47847374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	C6orf138,NS,haematopoietic_neoplasm,-1,1	C6orf138	NM_001013732	exon3	c.C1206A	p.H402Q	GATGCTGTGGTAG		72	4	0.06	80	0	0		-1	1	0	0				
HDAC9	9734	mdanderson.org	37	7	18767261	18767261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	HDAC9_ENST00000262069,caecum,carcinoma,-1,4	HDAC9_ENST00000262069	NM_178425	exon12	c.C1790T	p.A597V	TGGCTGCGGTTGG		79	4	0.05	62	0	0		-1	4	0	0				
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20449503	20449503	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_002214	exon14	c.G2193C	p.K731N	GGATAAGTTGATT		216	43	0.20	182	0	0				3	1	0.33			
FLJ35390	0	broad.mit.edu	37	7	44081003	44081004	+	RNA	INS	-	-	C	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	ACATTCTTTTGGG		11	4	0.36	4	0	0				0	0				
CCT6A	908	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	56119654	56119654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001762	exon1	c.T113A	p.L38Q	CCAACCTGGGGCC		127	32	0.25	62	0	0				806	180	0.22			
PEX1	5189	mdanderson.org	37	7	92143220	92143220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_000466	exon6	c.C1301A	p.P434Q	TCCACTGGAGTTA		42	3	0.07	26	0	0				24	0	0.00			
MGC72080	0	hgsc.bcm.edu	37	7	97599705	97599705	+	RNA	SNP	T	T	G	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	TTTTTTTTTGGAG		250	13	0.05	168	0	0				2	0	0.00			
ZNF777	27153	mdanderson.org	37	7	149129364	149129364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_015694	exon6	c.C1999A	p.P667T	ACTCGGGGCACGT		40	3	0.08	39	0	0				29	0	0.00			
MLL3	58508	mdanderson.org	37	7	151843697	151843697	+	Missense_Mutation	SNP	C	C	T	rs151112171		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_170606	exon53	c.G14018A	p.R4673H	GCTATGCGTGCCA		51	3	0.06	35	0	0	0			34	0	0.00			
LOC392196	0	broad.mit.edu	37	8	11986539	11986539	+	RNA	SNP	G	G	A	rs186086528	by1000genomes	TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	TCAAGTGGCAGGT		96	20	0.21	82	2	0.0243902439				0	0				
GSR	2936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	30560672	30560672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	NM_001195103	exon5	c.C578T	p.A193V	TGTGGGGCGGTGT		128	37	0.29	134	0	0				70	23	0.33			
.	441420	bcgsc.ca	37	9	45377030	45377030	+	RNA	SNP	G	G	A	rs71240324		TCGA-2G-AAG7-01A-11D-A42Y-10	TCGA-2G-AAG7-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	35345420-69f0-4148-9040-4d0e2079bca1	e44e99f1-5a48-41f2-adf0-0cc3bd073cf8	.	.	.	.	.	.	GAACAGGTAACAG		49	11	0.22	56	3	0.0535714286				0	0