Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
ACTRT2	140625	broad.mit.edu	37	1	2938392	2938392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ACTRT2,NS,adenocarcinoma,0,1	ACTRT2	NM_080431	exon1	c.T142C	p.S48P	GCTCCCTCAGCAG		127	3	0.02	122	1	0.0081967213		69	1	0	0				
MEGF6	1953	broad.mit.edu	37	1	3422702	3422702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	MEGF6	NM_001409	exon15	c.C1888A	p.P630T	GCCCTGGGTCGCA		132	4	0.03	136	0	0		91		12	0	0.00			
AHDC1	27245	mdanderson.org	37	1	27875918	27875918	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001029882	exon6	c.C2709T	p.S903S	AGCCCCGCTGCTA		56	3	0.05	46	0	0				49	0	0.00			
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	74835124	74835124	+	Silent	SNP	C	C	A	rs41289190	bycluster;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	TNNI3K,NS,carcinoma,0,2	TNNI3K	NM_001199327	exon18	c.C1825A	p.R609R	TTTTGCCGAGAGG		153	26	0.17	152	0	0		0	2	7	1	0.14			
ATP1A1	476	broad.mit.edu	37	1	116946529	116946529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ATP1A1	NM_000701	exon22	c.T2975C	p.F992S	GTGCCTTCCCCTA		149	3	0.02	124	0	0		87		845	0	0.00			
TCHH	7062	mdanderson.org	37	1	152082647	152082647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	TCHH,extremity,malignant_melanoma,0,1	TCHH	NM_007113	exon3	c.T3046C	p.W1016R	TCTCCCACTCCTG		114	9	0.08	100	6	0.06		0	1	3	0	0.00			
ASPM	259266	broad.mit.edu	37	1	197070295	197070295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ASPM	NM_018136	exon18	c.C8086A	p.Q2696K	ATGACTGAATTAG		149	5	0.03	133	1	0.007518797		444		53	0	0.00			
PITRM1	10531	mdanderson.org	37	10	3214936	3214936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001242307	exon1	c.T29C	p.L10P	ACACACAGGCCCT		25	3	0.12	33	0	0				24	0	0.00			
BTAF1	9044	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	93784712	93784712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	BTAF1	NM_003972	exon35	c.C5063G	p.S1688C	GGCATTCCATTGT		142	5	0.04	141	0	0		148		78	3	0.04			
TPP1	1200	mdanderson.org	37	11	6637242	6637242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	TPP1,NS,carcinoma,-1,1	TPP1	NM_000391	exon9	c.C1139A	p.A380D	CTGGAGGCAGGGA		49	3	0.06	44	0	0		-1	1	154	0	0.00			
CD6	923	ucsc.edu	37	11	60777289	60777289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	CD6	NM_006725	exon5	c.C1027T	p.R343W	TCCTGGCGGTTCA		39	4	0.10	25	0	0		122		17	0	0.00			
GANAB	23193	hgsc.bcm.edu	37	11	62400201	62400201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	GANAB,NS,carcinoma,+1,1	GANAB	NM_198335	exon10	c.C898A	p.R300S	AGAGGCGATATGG		56	3	0.05	59	0	0		1	1	313	0	0.00			
C11orf95	65998	mdanderson.org	37	11	63533328	63533328	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001144936	exon2	c.G588A	p.E196E	CTCCTCCTCTTCT		20	3	0.15	38	0	0				3	0	0.00			
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66948868	66948871	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	AAGT	AAGT					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_012308	exon4	c.258_260del	p.86_87del	GGAATAAAGTAAG		96	22	0.23	83	0	0				11	0	0.00			
PITPNM1	9600	mdanderson.org	37	11	67261233	67261233	+	Missense_Mutation	SNP	G	G	T	rs370108604	alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_004910	exon21	c.C3084A	p.D1028E	GGAGCCGTCGATG		40	3	0.08	46	0	0				35	0	0.00			
DDX6	1656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118627002	118627002	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_004397	exon11	c.C1141A	p.R381R	CATTTCGGAAATC		42	12	0.29	39	0	0				107	52	0.49			
VPS26B	112936	mdanderson.org	37	11	134114845	134114845	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	VPS26B,NS,carcinoma,+1,1	VPS26B	NM_052875	exon5	c.G735T	p.P245P	CATCCCGATCCGG		31	3	0.10	41	0	0		1	1	75	0	0.00			
PRB3	5544	broad.mit.edu	37	12	11420543	11420543	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	PRB3_ENST00000538488,NS,carcinoma,0,1	PRB3	NM_006249	exon3	c.C640A	p.Q214K	GGGACTGGTTTCC		282	9	0.03	128	4	0.03125		84	1	1	0	0.00			
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25380271	25380271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	KRAS_ENST00000256078,caecum,carcinoma,0,6	KRAS_ENST00000256078	NM_004985	exon3	c.G187A	p.E63K	TGTACTCCTCTTG		218	42	0.19	97	1	0.0103092784		0	6	127	33	0.26			
SPATS2	65244	broad.mit.edu	37	12	49908383	49908383	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	SPATS2	NM_023071	exon10	c.G885T	p.V295V	CAAAGTGAAAGCT		99	4	0.04	64	0	0		43		111	0	0.00			
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51445948	51445948	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001243689	exon3	c.G348C	p.K116N	TATAAAGTTTCAT		75	9	0.12	63	0	0				28	5	0.18			
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53825148	53825148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_020547	exon11	c.C1613T	p.A538V	TTCCTGCCCCTAC		206	41	0.20	144	0	0				3	0	0.00			
GNS	2799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	65141505	65141505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_002076	exon3	c.A446G	p.K149R	AAATATTTCCCTG		241	51	0.21	114	0	0				82	11	0.13			
PLXNC1	10154	broad.mit.edu	37	12	94658982	94658982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	PLXNC1	NM_005761	exon21	c.T3578G	p.V1193G	GGCAGGTTCCGGA		160	30	0.19	131	18	0.1374045802		135		20	3	0.15			
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132404132	132404132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ULK1,NS,carcinoma,0,1	ULK1	NM_003565	exon25	c.C2800A	p.Q934K	GTGAAGCAGGGTG		57	10	0.18	51	0	0		0	1	153	29	0.19			
GOLGA3	2802	broad.mit.edu;mdanderson.org	37	12	133381349	133381349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	GOLGA3	NM_001172557	exon7	c.C1550A	p.A517D	ACCTTGGCCATAA		93	4	0.04	60	0	0		234		65	0	0.00			
FLT3	2322	ucsc.edu	37	13	28644724	28644724	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	FLT3	NM_004119	exon2	c.G69T	p.G23G	AATAGTCCCAAAT		42	4	0.10	46	0	0		15525		0	0				
IPO5	3843	hgsc.bcm.edu	37	13	98658520	98658520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	IPO5,NS,carcinoma,0,1	IPO5	NM_002271	exon17	c.C1688T	p.A563V	AGAATGCGGTTCA		93	4	0.04	98	0	0		0	1	164	0	0.00			
CCDC88C	440193	mdanderson.org	37	14	91804418	91804418	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001080414	exon10	c.G981A	p.R327R	CTCCAGCCTCTCC		44	3	0.07	47	0	0				8	0	0.00			
TRMT61A	115708	mdanderson.org	37	14	104001089	104001089	+	Silent	SNP	C	C	T	rs372778660		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_152307	exon4	c.C801T	p.S267S	CCGCAGCGGCACG		32	3	0.09	29	0	0				53	0	0.00			
PACS2	23241	mdanderson.org	37	14	105834425	105834425	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015197	exon6	c.G601T	p.E201X	TCCGAGGAGGAGT		45	3	0.07	50	0	0				20	0	0.00			
GGA2	23062	mdanderson.org	37	16	23481479	23481479	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015044	exon15	c.G1458A	p.L486L	AGGCGGCAGGCTG		39	3	0.08	36	0	0				158	0	0.00			
UBFD1	56061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23569548	23569548	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	UBFD1,colon,carcinoma,+2,1	UBFD1	NM_019116	exon2	c.C303T	p.F101F	GAAGTTCCCCCTG		70	9	0.13	83	0	0		2	1	111	25	0.23			
MARVELD3	91862	mdanderson.org	37	16	71660181	71660181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_052858	exon1	c.C49T	p.R17W	AGAGAGCGGGACC		18	2	0.11	25	0	0				1	0	0.00			
PITPNA	5306	mdanderson.org	37	17	1451640	1451640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_006224	exon4	c.C239T	p.A80V	TTCAGGGCTCCCT		44	3	0.07	53	0	0				77	0	0.00			
CCDC144B	284047	hgsc.bcm.edu	37	17	18446965	18446965	+	RNA	SNP	T	T	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	ATTTAATTCATAA		180	46	0.26	214	0	0				0	0				
KRT18P55	0	broad.mit.edu	37	17	26633347	26633348	+	RNA	INS	-	-	G	rs35679432	bycluster	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	TGTTGTTTTTTTT		12	4	0.33	9	0	0				0	0				
NEUROD2	4761	mdanderson.org	37	17	37761788	37761788	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_006160	exon2	c.G1065A	p.S355S	ATTCTCCGAGTGG		64	3	0.05	73	0	0				1	0	0.00			
HAP1	9001	mdanderson.org	37	17	39884463	39884463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001079870	exon7	c.G1214A	p.R405H	CGGCAGCGCTGCT		42	3	0.07	33	0	0				4	0	0.00			
HOXB4	3214	mdanderson.org	37	17	46655452	46655452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_024015	exon1	c.C230A	p.P77Q	GGTGGCGGAGGCG		18	2	0.11	21	0	0				0	0				
PPM1E	22843	mdanderson.org	37	17	56833708	56833708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014906	exon1	c.C350T	p.P117L	CGCCGCCGCCGCC		30	2	0.07	41	0	0				0	0				
AATK	9625	mdanderson.org	37	17	79094597	79094597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001080395	exon11	c.G3139A	p.A1047T	CTTGTGCCTCCCC		45	4	0.09	44	0	0				1	0	0.00			
NCLN	56926	mdanderson.org	37	19	3193320	3193320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_020170	exon3	c.G414T	p.E138D	CATGGAGACCGCC		29	3	0.10	39	0	0				104	0	0.00			
ZNF490	57474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12692507	12692507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ZNF490,NS,carcinoma,+2,1	ZNF490	NM_020714	exon5	c.A382G	p.K128E	CTTCTTTATTTTC		108	17	0.16	70	0	0		2	1	45	20	0.44			
FOSB	2354	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	45971880	45971880	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	FOSB	NM_001114171	exon1	c.C36A	p.G12G	CTCCGGCTCCCGG		84	5	0.06	94	0	0		29		2	0	0.00			
SIX5	147912	mdanderson.org	37	19	46269313	46269313	+	Missense_Mutation	SNP	G	G	T	rs2014377	bycluster;byfrequency;by2hit2allele;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_175875	exon3	c.C1666A	p.L556M	GCTGCAGGGCCAC		110	3	0.03	92	0	0				53	0	0.00			
DMPK	1760	mdanderson.org	37	19	46274631	46274631	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001081563	exon12	c.C1654A	p.R552R	TGGCCCGGGGACT		47	3	0.06	50	0	0				85	0	0.00			
SHANK1	50944	broad.mit.edu	37	19	51215270	51215270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	SHANK1	NM_016148	exon6	c.G894T	p.E298D	GAGCAGCTCGCAG		104	6	0.06	98	1	0.0102040816		210		3	0	0.00			
KLK10	5655	mdanderson.org	37	19	51519206	51519206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_145888	exon4	c.C476A	p.P159H	CGGTAGGGAAGCT		35	3	0.09	25	0	0				2	0	0.00			
ZNF480	147657	broad.mit.edu;mdanderson.org	37	19	52817472	52817472	+	Missense_Mutation	SNP	G	G	T	rs200373642	alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ZNF480	NM_144684	exon3	c.G139T	p.A47S	GACCCTGCACAGA		92	4	0.04	72	0	0		123		87	0	0.00			
RDH13	112724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55559896	55559896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	RDH13_ENST00000415061,colon,carcinoma,-1,2	RDH13_ENST00000415061	NM_001145971	exon5	c.G459C	p.L153F	GTTTGTCAAGAGA		92	21	0.23	69	0	0		-1	2	26	7	0.27			
ZFP28	140612	mdanderson.org	37	19	57050578	57050578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_020828	exon1	c.C191T	p.T64M	CCCCTACGGGGCC		26	3	0.12	13	0	0				7	0	0.00			
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27677283	27677283	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015662	exon32	c.T3468C	p.G1156G	GAATTTACCCTAC		102	32	0.31	90	0	0				171	55	0.32			
EPC2	26122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149501290	149501290	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015630	exon3	c.A413T	p.Q138L	CTTTGCAATTTGA		245	49	0.20	249	0	0				21	7	0.33			
ATF2	1386	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	175979435	175979435	+	Silent	SNP	G	G	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001880	exon8	c.C609G	p.S203S	GTTAGAGGATGGT		127	6	0.05	162	0	0				36	1	0.03			
HECW2	57520	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	197183390	197183390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	HECW2	NM_020760	exon9	c.A2224G	p.S742G	CCAGGCTCCCCCT		146	6	0.04	160	2	0.0125		239		0	0				
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228882457	228882457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_030623	exon7	c.T3113C	p.F1038S	TTGGCAAAAAGAT		122	38	0.31	109	0	0				0	0				
KIF1A	547	broad.mit.edu	37	2	241696935	241696935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	KIF1A	NM_001244008	exon27	c.T2659C	p.S887P	TGGGGGAGGGGGT		133	20	0.15	120	12	0.1		152		0	0				
THBD	7056	mdanderson.org	37	20	23028597	23028597	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_000361	exon1	c.G1545T	p.S515S	CAAGCCCGAATGC		56	4	0.07	50	0	0				3	0	0.00			
RALY	22913	broad.mit.edu	37	20	32664877	32664877	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	RALY	NM_016732	exon8	c.C702T	p.G234G	CGGCGGCGGTGGT		85	5	0.06	87	0	0		44		231	0	0.00			
CSE1L	1434	mdanderson.org	37	20	47691377	47691377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001316	exon11	c.G1122T	p.L374F	AGATTTGGAAGGA		113	5	0.04	115	1	0.0086956522				315	0	0.00			
CTSZ	1522	mdanderson.org	37	20	57581505	57581505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001336	exon2	c.C179T	p.A60V	AGATCCGCTGGGG		46	3	0.07	61	0	0				1152	1	0.00			
PPP1R3D	5509	broad.mit.edu	37	20	58514308	58514308	+	Missense_Mutation	SNP	C	C	T	rs374884643		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	PPP1R3D,NS,carcinoma,0,2	PPP1R3D	NM_006242	exon1	c.G679A	p.A227T	GGCCTGCGGGCCC		83	3	0.04	83	1	0.0120481928		23	2	8	0	0.00			
TCEA2	6919	mdanderson.org	37	20	62701120	62701120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_003195	exon6	c.G463T	p.D155Y	GCAGATGACCACG		39	3	0.08	65	0	0				27	0	0.00			
TTC3	7267	broad.mit.edu	37	21	38507753	38507753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	TTC3	NM_001001894	exon18	c.G1517T	p.C506F	AGCGTTGCCGCAG		333	4	0.01	263	1	0.0038022814		182		11	0	0.00			
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37891566	37891566	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014550	exon15	c.G2331A	p.E777E	GCATTTCTCCTGA		62	16	0.26	59	0	0				48	15	0.31			
MIR33A	407039	mdanderson.org	37	22	42296983	42296983	+	RNA	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	TCTGGTGGTACCC		40	3	0.08	40	0	0				0	0				
EFCAB6	64800	mdanderson.org	37	22	44079680	44079680	+	Missense_Mutation	SNP	G	G	T	rs137794	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_022785	exon12	c.C1198A	p.H400N	CAGTGTGTCTAAA		69	4	0.06	85	0	0				0	0				
CELSR1	9620	broad.mit.edu	37	22	46804955	46804955	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	CELSR1	NM_014246	exon9	c.C5164A	p.R1722R	CCTTCCGGGTCCG		126	4	0.03	101	0	0		242		5	0	0.00			
OSBPL10	114884	broad.mit.edu;mdanderson.org	37	3	32022633	32022633	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	OSBPL10	NM_017784	exon1	c.T39G	p.G13G	GTTGCTACCCCCG		13	6	0.46	21	4	0.1904761905		160		0	0				
VIPR1	7433	broad.mit.edu;mdanderson.org	37	3	42560718	42560718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	VIPR1	NM_004624	exon3	c.G188T	p.C63F	TAGGCTGCAGCAA		65	4	0.06	84	0	0		45		0	0				
PTPN23	25930	mdanderson.org	37	3	47447256	47447256	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015466	exon5	c.C382T	p.L128L	TCCATGCTGGGGG		49	3	0.06	59	0	0				30	0	0.00			
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47450550	47450550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_015466	exon16	c.G1615C	p.A539P	CGGGCTGCCCTGC		45	15	0.33	59	0	0				39	17	0.44			
P4HTM	54681	mdanderson.org	37	3	49042540	49042540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_177938	exon6	c.G1134T	p.Q378H	GACACAGGCACAG		43	3	0.07	35	0	0				4	0	0.00			
MST1	4485	hgsc.bcm.edu;broad.mit.edu	37	3	49723603	49723603	+	Missense_Mutation	SNP	G	G	A	rs199969873	bycluster;by1000genomes	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	MST1,NS,carcinoma,0,5	MST1	NM_020998	exon9	c.C1039T	p.R347W	GGTTCCGGCAGAA		37	6	0.16	51	2	0.0392156863	0.005	0	5	19	0	0.00			
CLSTN2	64084	mdanderson.org	37	3	140282817	140282817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_022131	exon16	c.G2497T	p.A833S	AGCATTGCCACAG		78	5	0.06	95	0	0				0	0				
NSG1	0	broad.mit.edu	37	4	4393208	4393208	+	Missense_Mutation	SNP	G	G	A	rs149457560	bycluster;by1000genomes	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014392	exon3	c.G136A	p.V46M	GTGGTCGTGAAAA		69	3	0.04	109	0	0				65	0	0.00			
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55599321	55599321	+	Missense_Mutation	SNP	A	A	T	rs121913507	bycluster	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	KIT,colon,carcinoma,+1,932	KIT	NM_000222	exon17	c.A2447T	p.D816V	CCAGAGACATCAA		65	10	0.15	93	0	0		1	932	103	53	0.51			
CLPTM1L	81037	hgsc.bcm.edu;mdanderson.org	37	5	1341803	1341803	+	Missense_Mutation	SNP	C	C	T	rs200467747	bycluster	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_030782	exon3	c.G436A	p.G146R	ACTCCCCGGTGAG		77	4	0.05	101	0	0				203	0	0.00			
DNAJC18	202052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138755762	138755762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_152686	exon7	c.G932A	p.C311Y	TTCCAACAACTAG		176	34	0.19	151	0	0				40	12	0.30			
PCDHB7	56129	hgsc.bcm.edu;broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	rs374392843		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	PCDHB7,NS,carcinoma,0,4	PCDHB7	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG		71	3	0.04	52	1	0.0192307692		0	4	0	0				
PCDHGA12	0	broad.mit.edu	37	5	140811892	140811892	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	PCDHGA12	NM_032094	exon1	c.C1566A	p.Y522X	CGACTACGAGCAG		89	3	0.03	82	0	0		271		1	0	0.00			
NHP2	55651	broad.mit.edu	37	5	177576723	177576723	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	NHP2	NM_017838	exon4	c.A453C	p.L151L	TAGGGGTAGGGGC		273	23	0.08	267	23	0.0861423221		12		488	10	0.02			
BTN2A3P	54718	hgsc.bcm.edu	37	6	26422353	26422353	+	RNA	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	BTN2A3,NS,carcinoma,0,9	BTN2A3	.	.	.	.	ATGGAACCAGCTG		103	6	0.06	93	1	0.0107526882		0	9	2	0	0.00			
ICK	22858	broad.mit.edu	37	6	52876923	52876923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ICK	NM_016513	exon11	c.G1255A	p.A419T	AGTCAGCCCAATC		86	3	0.03	94	1	0.0106382979		62		11	0	0.00			
RIMS1	22999	mdanderson.org	37	6	72975733	72975733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_014989	exon22	c.C3379T	p.H1127Y	AGTTTGCATTCAC		52	3	0.06	45	0	0				0	0				
HSF2	3298	mdanderson.org	37	6	122720904	122720904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001135564	exon1	c.C22T	p.P8S	AACGTGCCGGCTT		45	3	0.07	57	0	0				35	0	0.00			
FSCN1	6624	broad.mit.edu	37	7	5645080	5645080	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	FSCN1,NS,carcinoma,+1,1	FSCN1	NM_003088	exon5	c.A1457C	p.D486A	CCGTGGACCCCGC		100	25	0.25	81	17	0.2098765432		29	1	252	0	0.00			
ISPD	729920	hgsc.bcm.edu	37	7	16415788	16415788	+	Missense_Mutation	SNP	G	G	T	rs376411072	alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	ISPD_ENST00000407010,NS,carcinoma,0,2	ISPD_ENST00000407010	NM_001101426	exon3	c.C613A	p.R205S	TGGCACGTTCTAG		113	5	0.04	83	0	0		0	2	13	0	0.00			
FZD9	8326	broad.mit.edu	37	7	72849813	72849813	+	Silent	SNP	A	A	G	rs200330017		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	FZD9,NS,carcinoma,+2,1	FZD9	NM_003508	exon1	c.A1476G	p.G492G	GCCCGGAGGCCGG		108	15	0.14	74	5	0.0675675676		51	1	3	0	0.00			
KRBA1	84626	broad.mit.edu	37	7	149430561	149430561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	KRBA1	.	.	.	.	CTGGGGAGGCGCC		61	10	0.16	47	2	0.0425531915		68		37	1	0.03			
FAM66D	0	broad.mit.edu	37	8	11994626	11994627	+	RNA	DEL	GT	GT	-	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	GT	GT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	TTGTGCGTGTGTG		192	7	0.04	121	0	0				1	0	0.00			
WRN	7486	broad.mit.edu	37	8	30945390	30945390	+	Missense_Mutation	SNP	A	A	T	rs149565907	bycluster;by1000genomes	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	WRN,NS,carcinoma,0,1	WRN	NM_000553	exon12	c.A1530T	p.E510D	AGAAGAAGATGAT		70	3	0.04	65	0	0		116	1	12	0	0.00			
ATAD2	29028	bcgsc.ca	37	8	124382188	124382188	+	Silent	SNP	A	A	G	rs112492316		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	ATAD2	NM_014109	exon7	c.T804C	p.D268D	ATCGTCATCATCA		161	7	0.04	99	1	0.0101010101		160		36	0	0.00			
TMEM65	157378	bcgsc.ca	37	8	125384234	125384234	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	TMEM65	NM_194291	exon1	c.C165A	p.G55G	GTGCGTGCCCAGC		27	4	0.15	26	0	0		14		4	0	0.00			
RANBP6	26953	mdanderson.org	37	9	6014327	6014327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_001243203	exon2	c.C166A	p.L56M	AGTACAGGCTGCA		58	3	0.05	106	0	0				12	0	0.00			
.	0	broad.mit.edu	37	9	66466138	66466139	+	RNA	DEL	AG	AG	-	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	AG	AG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	TAAGAAAGAGAGT		8	2	0.25	8	0	0				7	0	0.00			
LOC100132077	0	broad.mit.edu	37	9	97108415	97108416	+	RNA	INS	-	-	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	.	.	.	.	CAAAAACAAAAAA		8	3	0.38	9	0	0				2	0	0.00			
FBP2	8789	mdanderson.org	37	9	97349666	97349666	+	Missense_Mutation	SNP	C	C	T	rs573212	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_003837	exon2	c.G256A	p.V86I	ATTGGACCATGTT		95	3	0.03	122	0	0				0	0				
C9orf96	169436	mdanderson.org	37	9	136265602	136265602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	C9orf96_ENST00000371957,NS,carcinoma,+1,2	C9orf96_ENST00000371957	NM_153710	exon12	c.G1143T	p.R381S	TGACAGGGTCCTC		21	2	0.10	28	0	0		1	2	0	0				
PPP2R3B	28227	mdanderson.org	37	X	306965	306965	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_013239	exon6	c.C823A	p.R275R	AGGACCGGTTCAC		44	3	0.07	41	0	0				54	0	0.00			
NHS	4810	broad.mit.edu	37	X	17745674	17745674	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	NHS	NM_198270	exon6	c.G3385T	p.E1129X	AAGTCTGAAGAAG		197	6	0.03	149	0	0		302		1	0	0.00			
LANCL3	347404	broad.mit.edu	37	X	37431145	37431145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	LANCL3	NM_001170331	exon1	c.G22A	p.A8T	TGCTTCGCCAATC		62	3	0.05	46	0	0		42		4	0	0.00			
USP11	8237	broad.mit.edu	37	X	47092516	47092516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	USP11	NM_004651	exon1	c.G203T	p.R68I	AGGATAGAGAGCC		72	3	0.04	74	0	0		93		12	0	0.00			
PIM2	11040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48772441	48772441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_006875	exon4	c.A451C	p.I151L	GCTGGATGGCTGC		173	62	0.36	128	0	0				1386	691	0.50			
HEPH	9843	mdanderson.org	37	X	65428068	65428068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	.	NM_138737	exon15	c.G2705T	p.W902L	CTGTCTGGCCACT		45	3	0.07	38	0	0				20	0	0.00			
GPC3	2719	broad.mit.edu;bcgsc.ca	37	X	133119396	133119396	+	Silent	SNP	C	C	G	novel		TCGA-2G-AAG9-01A-11D-A42Y-10	TCGA-2G-AAG9-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	59db811a-0bfd-4074-a5a3-e9f33402c6cd	6ef662e1-31f7-4636-9d21-a5409c9d46b3	.	GPC3	NM_001164617	exon1	c.G81C	p.P27P	CGGCGGCGGGGGC		124	6	0.05	125	1	0.008		88		1	0	0.00