Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CELA2B 51032 broad.mit.edu 37 1 15813823 15813823 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . CELA2B NM_015849 exon7 c.G683A p.R228Q ACGGCCGGTGGGA 99 4 0.04 90 0 0 37 0 0 MST1L 0 broad.mit.edu 37 1 17084508 17084508 + RNA SNP T T C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001271733 exon12 c.A1590G p.L530L CCGCTGTAGGCCT 341 14 0.04 339 0 0 23 0 0.00 ASAP3 55616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 23763670 23763670 + Missense_Mutation SNP A A G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_017707 exon14 c.T1295C p.V432A CTCTTCACCTCCG 122 15 0.12 120 0 0 45 9 0.20 PDIK1L 149420 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 26441057 26441057 + Missense_Mutation SNP C C G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001243532 exon2 c.C258G p.H86Q GTCCCACGGCTCT 104 8 0.08 87 0 0 6 1 0.17 WDTC1 23038 broad.mit.edu 37 1 27632718 27632718 + Silent SNP T T G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . WDTC1 NM_001276252 exon16 c.T1878G p.G626G GGAGGGTGCTTCA 110 10 0.09 101 6 0.0594059406 69 102 5 0.05 TEX38 374973 broad.mit.edu 37 1 47138732 47138732 + Silent SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001145474 exon2 c.C225T p.Y75Y GCGCTACGGCATG 116 4 0.03 114 0 0 12 0 0.00 LRP8 7804 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 53724042 53724042 + Missense_Mutation SNP C C A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_004631 exon14 c.G2158T p.A720S GACAGGCACATGT 163 12 0.07 134 0 0 43 2 0.05 CELSR2 1952 mdanderson.org 37 1 109792751 109792751 + Missense_Mutation SNP T T C rs200277265 TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e CELSR2,colon,carcinoma,0,1 CELSR2 NM_001408 exon1 c.T50C p.L17P CGCCGCTGCTGCT 48 3 0.06 33 0 0 0 1 1 0 0.00 ANKRD35 148741 broad.mit.edu 37 1 145560171 145560171 + Silent SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . ANKRD35 NM_144698 exon8 c.G657T p.G219G CACAGGGCATGAT 153 4 0.03 184 0 0 96 0 0 PRG4 10216 broad.mit.edu 37 1 186276240 186276240 + Silent SNP T T C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e PRG4,NS,carcinoma,0,4 PRG4 NM_005807 exon7 c.T1389C p.T463T CACCACTCCCAAG 54 15 0.28 34 2 0.0588235294 259 4 0 0 CR1 1378 broad.mit.edu 37 1 207751340 207751340 + Missense_Mutation SNP C C G rs113578474 bycluster;alternate_allele TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . CR1 NM_000651 exon29 c.C4728G p.S1576R CTGGAGCGGCCCC 401 5 0.01 487 1 0.0020533881 354 0 0 . 0 broad.mit.edu 37 10 48968566 48968566 + RNA SNP A A G rs80150874 TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . GATAACAAACTGG 46 7 0.15 51 1 0.0196078431 1 0 0.00 USP54 159195 hgsc.bcm.edu 37 10 75279658 75279658 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_152586 exon17 c.C2575T p.R859W GGCTCCGTGCTTT 83 4 0.05 67 0 0 10 0 0.00 CRTAC1 55118 mdanderson.org 37 10 99655119 99655119 + Missense_Mutation SNP A A T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001206528 exon11 c.T1369A p.F457I TGGCAAAGGCCCC 49 3 0.06 50 0 0 19 0 0.00 MUC2 4583 mdanderson.org 37 11 1092971 1092971 + Missense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e MUC2_ENST00000441003,NS,carcinoma,0,1 MUC2_ENST00000441003 NM_002457 exon30 c.C4790T p.T1597I CCCCAACACCCAC 16 2 0.13 38 1 0.0263157895 0 1 0 0 ZDHHC5 25921 mdanderson.org 37 11 57456091 57456091 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_015457 exon4 c.G338T p.R113L TTTACCGTCCCCC 56 3 0.05 106 0 0 72 0 0.00 LTBP3 4054 broad.mit.edu 37 11 65325326 65325328 + In_Frame_Del DEL CAG CAG - novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 CAG CAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . LTBP3 NM_001130144 exon1 c.103_105del p.35_35del CAGGCCCAGCAGC 6 2 0.33 10 0 0 55 0 0 RIN1 9610 broad.mit.edu 37 11 66103323 66103323 + Missense_Mutation SNP T T G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . RIN1 NM_004292 exon3 c.A292C p.T98P GGCGGGTGTTAGA 47 15 0.32 47 7 0.1489361702 64 4 0 0.00 EXPH5 23086 broad.mit.edu 37 11 108381652 108381652 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . EXPH5 NM_015065 exon6 c.C4582A p.P1528T AGTTTGGTTCATC 99 4 0.04 131 3 0.0229007634 193 0 0 ST3GAL4 6484 broad.mit.edu;mdanderson.org 37 11 126276436 126276436 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . ST3GAL4 NM_001254757 exon3 c.G85T p.D29Y CGGGAAGACAGGT 53 4 0.08 79 0 0 25 116 0 0.00 BCAT1 586 broad.mit.edu 37 12 24995152 24995152 + Silent SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . BCAT1 NM_001178093 exon7 c.C717T p.Y239Y TGAGCCGTAATTC 154 4 0.03 73 0 0 44 2119 1 0.00 TUBA1C 84790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49663613 49663613 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_032704 exon3 c.G229A p.E77K CCAGATGAAGTTC 135 21 0.16 109 0 0 7170 1610 0.22 BEST3 144453 broad.mit.edu 37 12 70049388 70049388 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . BEST3 NM_032735 exon10 c.C1306A p.L436M CATCCAGTAGGTC 75 3 0.04 78 0 0 129 0 0 NBEA 26960 mdanderson.org 37 13 35672447 35672447 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_015678 exon11 c.G1585A p.A529T CTGTTGGCATTCC 34 3 0.09 46 0 0 0 0 RNF113B 140432 mdanderson.org 37 13 98829478 98829478 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_178861 exon1 c.C13A p.P5T GAGAAGGTGGCGC 19 3 0.16 27 0 0 10 0 0.00 IRS2 8660 mdanderson.org 37 13 110434903 110434903 + Silent SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_003749 exon1 c.C3498T p.A1166A GTTGTGGGCGAAG 42 3 0.07 46 0 0 4 0 0.00 NRL 4901 broad.mit.edu;mdanderson.org 37 14 24551760 24551760 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . NRL NM_006177 exon2 c.C298A p.Q100K GACCCTGCAGCAG 75 4 0.05 88 0 0 8 5 0 0.00 LTB4R2 56413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24780848 24780848 + Missense_Mutation SNP G G C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_019839 exon2 c.G978C p.E326D CATGGAGCTCCGA 38 5 0.13 41 1 0.0243902439 25 5 0.20 LINGO1 84894 ucsc.edu 37 15 77906739 77906739 + Missense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . LINGO1 NM_032808 exon2 c.G1510A p.G504S CGTTGCCGCCCGC 43 4 0.09 51 0 0 76 208 1 0.00 AXIN1 8312 broad.mit.edu;mdanderson.org 37 16 396715 396715 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . AXIN1 NM_181050 exon2 c.C311A p.T104N AGGAAAGTCCTGA 46 3 0.07 61 0 0 290 57 0 0.00 METRN 79006 mdanderson.org 37 16 767135 767135 + Silent SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_024042 exon4 c.G630T p.V210V CACTGTGGTGGCC 36 3 0.08 59 0 0 94 0 0.00 ZSCAN10 84891 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 3142732 3142732 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e ZSCAN10,NS,carcinoma,-1,1 ZSCAN10 NM_032805 exon1 c.C42A p.C14X GTGGCCGCAGAGC 72 4 0.06 78 0 0 -1 1 365 2 0.01 ACSM5 54988 mdanderson.org 37 16 20441066 20441066 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_017888 exon8 c.G1068T p.E356D GAGGGAGAAGTGG 38 3 0.08 47 0 0 1 0 0.00 TNRC6A 27327 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24826529 24826529 + Silent SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . TNRC6A NM_014494 exon19 c.C4734T p.N1578N TATGAACAGCAGT 84 17 0.20 115 1 0.0086956522 171 36 6 0.17 MAZ 4150 mdanderson.org 37 16 29818593 29818593 + Missense_Mutation SNP G G C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_002383 exon2 c.G487C p.A163P GCCACCGCCGTCG 37 9 0.24 41 6 0.1463414634 56 4 0.07 CCDC102A 92922 mdanderson.org 37 16 57552171 57552171 + Missense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_033212 exon6 c.G1057A p.E353K CGTTTTCGGCCTG 23 2 0.09 27 0 0 27 0 0.00 ZNF469 84627 mdanderson.org 37 16 88501768 88501768 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001127464 exon2 c.G7806T p.K2602N GGGGAAGTCAAAT 26 3 0.12 55 0 0 4 0 0.00 PELP1 27043 broad.mit.edu 37 17 4575679 4575679 + Silent SNP T T C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . PELP1 NM_014389 exon16 c.A2607G p.G869G GGGTCCTCCCCCA 157 5 0.03 135 3 0.0222222222 102 744 4 0.01 NLGN2 57555 broad.mit.edu 37 17 7320787 7320787 + Missense_Mutation SNP G G C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . NLGN2 NM_020795 exon7 c.G2177C p.G726A GTGGGGGCCCCCT 23 6 0.26 14 1 0.0714285714 61 29 0 0.00 DNAH2 146754 broad.mit.edu;mdanderson.org 37 17 7702429 7702429 + Silent SNP G G A rs149452093 TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . DNAH2 NM_020877 exon55 c.G8568A p.S2856S CCAGTCGCATATC 87 4 0.05 88 0 0 498 0 0 ERBB2 2064 broad.mit.edu 37 17 37879599 37879599 + Silent SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . ERBB2 NM_004448 exon17 c.G1974T p.V658V TGCGGTGGTTGGC 120 5 0.04 106 0 0 429 119 0 0.00 TANC2 26115 broad.mit.edu 37 17 61498459 61498459 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e TANC2_ENST00000389520,NS,carcinoma,0,2 TANC2 NM_025185 exon25 c.C5116T p.R1706X GCATACCGAGGTG 101 3 0.03 85 0 0 266 2 3 0 0.00 ITGB4 3691 mdanderson.org 37 17 73733624 73733624 + Missense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_000213 exon18 c.C2119T p.P707S GACTGCCCTCCGG 52 3 0.06 56 0 0 32 0 0.00 PCYT2 5833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 79866849 79866849 + Missense_Mutation SNP C C G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_002861 exon3 c.G243C p.Q81H GATGGCCTGCACC 119 16 0.13 142 0 0 84 11 0.13 LRRC45 201255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 79988252 79988252 + Silent SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_144999 exon16 c.C1726T p.L576L GTGGAGCTGCAGG 62 7 0.11 59 0 0 68 18 0.26 CCDC102B 79839 broad.mit.edu 37 18 66504389 66504389 + Missense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e CCDC102B,NS,carcinoma,-1,1 CCDC102B NM_001093729 exon4 c.C389T p.A130V AGATGGCGATGAA 105 3 0.03 189 0 0 92 1 7 0 0.00 TICAM1 148022 mdanderson.org 37 19 4818059 4818059 + Missense_Mutation SNP C C T rs201291933 bycluster;by1000genomes TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_182919 exon2 c.G331A p.A111T GCGAGGCGGGGCA 21 2 0.10 32 0 0 0 5 0 0.00 CCDC159 126075 broad.mit.edu 37 19 11464523 11464523 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . CCDC159 NM_001080503 exon9 c.G745T p.A249S TCGGGGGCCTGTC 73 6 0.08 94 1 0.0106382979 35 10 1 0.10 MAN2B1 4125 mdanderson.org 37 19 12766567 12766567 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_000528 exon14 c.C1771A p.R591S GTGCGCGGGCCTG 53 3 0.06 74 0 0 227 0 0.00 SIGLEC11 114132 broad.mit.edu 37 19 50462655 50462655 + Missense_Mutation SNP A A G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . SIGLEC11 NM_052884 exon5 c.T1019C p.L340P GAGCCAAGCCTGT 75 3 0.04 98 0 0 70 0 0 APOB 338 mdanderson.org 37 2 21234845 21234845 + Missense_Mutation SNP C C G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_000384 exon26 c.G4895C p.G1632A TCAGTGCCTAAGA 49 3 0.06 47 0 0 0 0 PPP1R21 129285 broad.mit.edu 37 2 48698417 48698417 + Splice_Site SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . PPP1R21 NM_001135629 exon11 c.1000-1G>T . TTTCCAGGAGACA 308 5 0.02 298 1 0.0033557047 47 1 0 0.00 . 0 broad.mit.edu 37 2 58688842 58688843 + RNA DEL CT CT - rs34082148 bycluster;alternate_allele TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 CT CT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . TGCTAGCTCTCTC 92 7 0.08 123 0 0 33 0 0.00 EDAR 10913 broad.mit.edu 37 2 109527398 109527398 + Silent SNP G G A rs191975348 bycluster;by1000genomes TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . EDAR . . . . GGGGCCGTCACCT 172 6 0.03 180 0 0 49 0 0 RIF1 55183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152320914 152320914 + Missense_Mutation SNP C C G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_018151 exon30 c.C4880G p.T1627S GTAATACTGTAAT 88 24 0.27 112 0 0 70 22 0.31 C2orf72 257407 mdanderson.org 37 2 231906019 231906019 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001144994 exon2 c.G643T p.A215S GAAGGAGCCTGGG 48 3 0.06 49 0 0 0 0 OCSTAMP 128506 ucsc.edu;bcgsc.ca 37 20 45170332 45170332 + Missense_Mutation SNP C C A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . OCSTAMP NM_080721 exon3 c.G1282T p.A428S CGATGGCATGCCG 34 4 0.12 44 0 0 34 0 0 MOCS3 27304 mdanderson.org 37 20 49575689 49575689 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_014484 exon1 c.G310T p.A104S GCAGCGGCCGGCG 46 3 0.07 60 0 0 27 0 0.00 MIR3648 0 broad.mit.edu 37 21 9825838 9825839 + RNA INS - - GCG rs372061766 bycluster TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . CGCGACTGCGGCG 6 3 0.50 4 0 0 0 0 . 0 broad.mit.edu 37 21 15461084 15461085 + RNA DEL AG AG - rs199958475 by1000genomes;alternate_allele TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 AG AG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . AAAAAAAGAAAAG 9 3 0.33 8 0 0 0 0 . 644637 bcgsc.ca 37 22 16349432 16349432 + RNA SNP G G A rs2106719 bycluster;byfrequency TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . ACAAGCGCAGACC 42 7 0.17 38 0 0 0 0 RIMBP3 85376 mdanderson.org 37 22 20460125 20460125 + Missense_Mutation SNP T T G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_015672 exon1 c.A1177C p.T393P GCAGGGTATAACA 51 4 0.08 127 2 0.0157480315 5 0 0.00 CBY1 25776 mdanderson.org 37 22 39067165 39067165 + Missense_Mutation SNP G G T rs140554782 alternate_allele TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001002880 exon5 c.G404T p.R135L TCTTGCGGCTGAA 47 3 0.06 70 0 0 72 0 0.00 CERK 64781 mdanderson.org 37 22 47083093 47083093 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_022766 exon13 c.C1552A p.Q518K CCAGCTGGCAGTG 48 3 0.06 40 0 0 40 0 0.00 SYCE3 644186 mdanderson.org 37 22 50989812 50989812 + Silent SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001123225 exon3 c.C129A p.A43A GTCATAGGCCATC 35 3 0.09 43 0 0 20 0 0.00 NUP210 23225 broad.mit.edu 37 3 13395547 13395547 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . NUP210 NM_024923 exon17 c.C2389T p.R797C ACCGGCGGCCCTC 130 4 0.03 173 0 0 182 27 0 0.00 COPG1 22820 broad.mit.edu 37 3 128973510 128973510 + Splice_Site SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_016128 exon6 c.324-1G>T . CCTGCAGCCTAAC 52 3 0.06 60 0 0 14 0 0.00 MUC4 4585 broad.mit.edu;mdanderson.org 37 3 195509308 195509308 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . MUC4 NM_018406 exon2 c.C9143T p.S3048L GATGCTGAGGAAG 88 5 0.06 100 1 0.01 1505 20 1 0.05 RGS12 6002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3319118 3319118 + Silent SNP C C T rs372019148 TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_002926 exon2 c.C1221T p.D407D TCTGGACGGGGAC 57 14 0.25 113 0 0 4 1 0.25 PACRGL 133015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 20706400 20706400 + Missense_Mutation SNP G G C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001258345 exon3 c.G170C p.R57T ATCCTAGACCAAG 126 32 0.25 220 0 0 38 10 0.26 KCTD8 386617 broad.mit.edu 37 4 44177058 44177058 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e KCTD8,caecum,carcinoma,+1,1 KCTD8 NM_198353 exon2 c.C1171A p.R391S AGGGGCGATCCAA 107 4 0.04 120 0 0 96 1 0 0 BMP2K 55589 mdanderson.org 37 4 79792166 79792166 + Missense_Mutation SNP C C G rs200441916 bycluster TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e BMP2K_ENST00000502871,caecum,carcinoma,0,4 BMP2K_ENST00000502871 NM_017593 exon11 c.C1461G p.H487Q GCAGCACCACCAC 14 2 0.14 16 0 0 0 4 8 1 0.13 TRAM1L1 133022 broad.mit.edu 37 4 118006429 118006429 + Missense_Mutation SNP C C G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . TRAM1L1 NM_152402 exon1 c.G121C p.E41Q TTCCCTCGAACAC 94 4 0.04 126 0 0 55 8 0 0.00 BBS7 55212 mdanderson.org 37 4 122770033 122770033 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_018190 exon9 c.C900A p.D300E ATAGCTGTCTTTT 39 3 0.08 79 0 0 15 0 0.00 . 152905 bcgsc.ca 37 4 146296708 146296708 + RNA SNP C C G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . AGCCATCGGCGGC 41 7 0.17 72 0 0 15 0 0.00 SDHA 6389 bcgsc.ca 37 5 236628 236628 + Missense_Mutation SNP C C T rs201139275 bycluster;byfrequency TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . SDHA NM_004168 exon10 c.C1346T p.A449V ATGGTGCCAACCG 101 9 0.09 150 2 0.0133333333 80 215 0 0.00 STARD4-AS1 0 broad.mit.edu 37 5 110908045 110908045 + RNA DEL A A - novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . GAAGCCAAAAAAA 9 3 0.33 7 0 0 0 0 HSPA9 3313 hgsc.bcm.edu;ucsc.edu 37 5 137902698 137902699 + Missense_Mutation DNP TG TG GT novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 TG TG Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_004134 exon8 c.C870A p.FK290LQ CTCTCTTGAACTC 247 29 0.12 228 0 0 0.001 1445 0 0.00 ZNF346 23567 mdanderson.org 37 5 176449808 176449808 + Silent SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_012279 exon1 c.G69T p.S23S CAGCTCGGAGTTG 21 2 0.10 16 0 0 14 0 0.00 SQSTM1 8878 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 179250972 179250972 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . SQSTM1 NM_003900 exon3 c.G416A p.R139H GAACCCGCTACAA 64 5 0.08 59 0 0 30 371 1 0.00 BTN2A3P 0 broad.mit.edu;mdanderson.org 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e BTN2A3,NS,carcinoma,0,9 . . . . . ATGGAACCAGCTG 78 5 0.06 92 1 0.0108695652 9 1 0 0.00 TTBK1 84630 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 43230837 43230837 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_032538 exon13 c.G1735A p.E579K CTGCCCGAGGAGG 130 8 0.06 106 0 0 0 0 FBXL4 26235 broad.mit.edu 37 6 99323347 99323347 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . FBXL4 NM_012160 exon8 c.C1646A p.T549K ATGTCTGTGTCAC 99 3 0.03 97 0 0 54 27 0 0.00 SHPRH 257218 broad.mit.edu 37 6 146256416 146256416 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . SHPRH NM_173082 exon12 c.C2731A p.Q911K TGACTTGGTCAAT 85 3 0.04 91 0 0 169 17 0 0.00 GRM1 2911 mdanderson.org 37 6 146755748 146755748 + Missense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_000838 exon9 c.C3401T p.A1134V AGGCGGCCAGCAA 22 2 0.09 55 0 0 0 0 SP8 221833 mdanderson.org 37 7 20824970 20824970 + Missense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_182700 exon2 c.G466A p.G156S CGCCGCCGCTGCC 57 3 0.05 40 0 0 4 2 0.50 SP4 6671 broad.mit.edu 37 7 21468306 21468306 + Missense_Mutation SNP G G A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e SP4,colon,carcinoma,0,1 SP4 NM_003112 exon2 c.G19A p.E7K AAGAAGGAGGAGG 79 3 0.04 66 0 0 91 1 1 0 0.00 ORAI2 80228 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 102087325 102087325 + Silent SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_032831 exon3 c.C591T p.A197A GGCCGCCCTGGTG 75 20 0.27 61 0 0 13 5 0.38 SLC13A4 26266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 135406263 135406263 + Silent SNP C C T rs370307347 TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_012450 exon2 c.G108A p.S36S AGCACACGAGGCC 426 75 0.18 341 0 0 1 0 0.00 LZTS1 11178 mdanderson.org 37 8 20107717 20107717 + Missense_Mutation SNP A A G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_021020 exon3 c.T1307C p.L436P CCCTCCAGGTCCT 46 3 0.07 55 0 0 30 0 0.00 AGPAT6 137964 broad.mit.edu 37 8 41478445 41478445 + Silent SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . AGPAT6 NM_178819 exon13 c.C1296T p.D432D GAAGGACACGTTC 240 5 0.02 218 0 0 32 387 18 0.05 rescued with RNA-seq POLB 5423 broad.mit.edu 37 8 42210059 42210059 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . POLB NM_002690 exon6 c.G343T p.V115L AAGTTTGTAGATG 110 3 0.03 102 0 0 60 108 0 0.00 FNTA 2339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 8 42940420 42940420 + Nonsense_Mutation SNP C C T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e FNTA,NS,carcinoma,-1,1 FNTA NM_002027 exon9 c.C1135T p.Q379X GTACAGCAATAAC 297 59 0.20 281 0 0 -1 1 387 80 0.21 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 77761779 77761779 + Missense_Mutation SNP G G C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_024721 exon8 c.G3677C p.S1226T ACAATAGTAGGGA 102 9 0.09 104 0 0 0 0 STK3 6788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 99608285 99608285 + Missense_Mutation SNP C C A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001256312 exon9 c.G881T p.R294I GTAGCTCTCTGCT 185 35 0.19 190 0 0 33 2 0.06 RNF139 11236 mdanderson.org 37 8 125499847 125499847 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_007218 exon2 c.G1957T p.G653C CACACAGGCGCAG 49 3 0.06 52 0 0 257 0 0.00 . 0 bcgsc.ca 37 9 40500069 40500069 + RNA SNP A A T rs2774142 by2hit2allele TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . AACCCAACTTTTT 118 7 0.06 137 1 0.0072992701 0 0 COL15A1 1306 broad.mit.edu 37 9 101797339 101797339 + Missense_Mutation SNP A A G novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . COL15A1 NM_001855 exon18 c.A2123G p.K708R GGAAAAAGGGACA 104 4 0.04 106 1 0.0094339623 211 62 0 0.00 GTF3C4 9329 mdanderson.org 37 9 135553575 135553575 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_012204 exon2 c.G569T p.R190L ACAATCGCCTGAC 54 3 0.06 61 0 0 53 0 0.00 NDOR1 27158 mdanderson.org 37 9 140109564 140109564 + Silent SNP G G A rs145912724 TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_001144026 exon9 c.G1083A p.P361P CTTCCCGCACACA 52 3 0.06 56 0 0 0 89 0 0.00 GPR64 10149 broad.mit.edu 37 X 19026144 19026144 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . GPR64 NM_001184834 exon19 c.C1520A p.A507D CTGGAAGCTAGCT 268 4 0.01 162 0 0 102 11 0 0.00 EIF1AX 1964 broad.mit.edu 37 X 20148690 20148690 + Missense_Mutation SNP C C A novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . EIF1AX NM_001412 exon6 c.G373T p.D125Y CATCATCTCCAGG 462 7 0.02 282 0 0 21 276 4 0.01 . 139249 bcgsc.ca 37 X 37402545 37402545 + RNA SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . . . . . GCTCTGGGCAGAG 32 14 0.44 24 0 0 0 0 WDR45 11152 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 48935722 48935722 + Missense_Mutation SNP G G C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_007075 exon3 c.C33G p.S11R ACGCAGGCTGGTC 93 7 0.08 69 0 0 110 2 0.02 SPIN3 169981 broad.mit.edu 37 X 57020933 57020933 + Missense_Mutation SNP T T C novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . SPIN3 NM_001010862 exon2 c.A448G p.M150V AGACCATCCCCCT 211 7 0.03 94 2 0.0212765957 33 3 0 0.00 HMGB3 3149 mdanderson.org 37 X 150156378 150156378 + Missense_Mutation SNP G G T novel TCGA-2G-AAGA-01A-11D-A42Y-10 TCGA-2G-AAGA-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6892b-86ee-426c-9e0b-583e6831cc56 f5daa72a-daaa-4cf0-bdc9-fde932b3440e . . NM_005342 exon5 c.G594T p.E198D GGAGGAGGATGAA 19 2 0.11 10 0 0 163 0 0.00