Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PLEKHN1 84069 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 906518 906518 + Missense_Mutation SNP C C T rs199724483 by1000genomes TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 PLEKHN1,NS,carcinoma,0,1 PLEKHN1 NM_001160184 exon7 c.C674T p.A225V GGACGGCGTCAGG 77 5 0.06 76 0 0 0.002 0 1 1 0 0.00 TP73 7161 ucsc.edu 37 1 3644260 3644260 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . TP73 NM_005427 exon8 c.C911T p.A304V GAAAAGCTGATGA 34 4 0.12 35 0 0 54 7 0 0.00 SERINC2 347735 mdanderson.org 37 1 31898760 31898760 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001199038 exon6 c.G637T p.G213C TACGCAGGTCAGT 41 3 0.07 38 0 0 41 0 0.00 GJA9 81025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 39340765 39340766 + Frame_Shift_Del DEL GT GT - novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 GT GT Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . GJA9 NM_030772 exon2 c.1006_1007del p.336_336del TACTAAGTGTGGA 142 33 0.23 114 0 0 55 0 0 PTBP2 58155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 97235325 97235325 + Missense_Mutation SNP T T A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_021190 exon4 c.T182A p.L61H GTGTACTTCATAT 209 55 0.26 192 0 0 33 15 0.45 POGZ 23126 broad.mit.edu 37 1 151378739 151378739 + Silent SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 POGZ_ENST00000491586,NS,carcinoma,0,2 POGZ NM_015100 exon19 c.G2772A p.P924P AGCCTGCGGGTGA 189 4 0.02 186 0 0 211 2 129 1 0.01 FCRLB 127943 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 161693309 161693309 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 FCRLB,NS,carcinoma,-2,1 FCRLB NM_001002901 exon3 c.C205T p.P69S CTTCTGCCCTCTC 177 33 0.19 201 1 0.0049751244 -2 1 0 0 FAM208B 54906 mdanderson.org 37 10 5789791 5789791 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_017782 exon15 c.G4407T p.Q1469H TACCCAGGTACAA 141 5 0.04 167 0 0 49 0 0.00 DNA2 1763 broad.mit.edu 37 10 70182359 70182359 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . DNA2 NM_001080449 exon16 c.C2405A p.A802D CCAAGAGCTCTGT 115 4 0.03 111 0 0 76 39 0 0.00 NPFFR1 64106 mdanderson.org 37 10 72014735 72014735 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_022146 exon4 c.C1271A p.T424N GGAATGGTGAGGG 15 2 0.13 12 0 0 0 0 NSMCE4A 54780 mdanderson.org 37 10 123734659 123734659 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_017615 exon1 c.C22A p.R8S GCCCGCGGCCGCT 10 2 0.20 15 0 0 3 0 0.00 MUC2 4583 mdanderson.org 37 11 1093437 1093437 + Silent SNP G G C novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 MUC2_ENST00000441003,NS,carcinoma,0,4 MUC2_ENST00000441003 NM_002457 exon30 c.G5256C p.T1752T CACCACGGTGACC 29 4 0.14 41 0 0 0 4 0 0 RCN1 5954 mdanderson.org 37 11 32112827 32112827 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_002901 exon1 c.G85A p.A29T CTGCGGGCCAAGC 56 3 0.05 64 0 0 104 0 0.00 EXT2 2132 bcgsc.ca 37 11 44130752 44130752 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 EXT2_ENST00000358681,NS,carcinoma,0,6 EXT2 NM_000401 exon3 c.G644T p.R215L GGGATCGAGGTAC 75 5 0.07 76 0 0 129 6 84 0 0.00 BRMS1 25855 mdanderson.org 37 11 66109598 66109598 + Silent SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001024957 exon2 c.C108A p.G36G CTGGCTGCCGCTC 56 4 0.07 54 0 0 170 0 0.00 PITPNM1 9600 mdanderson.org 37 11 67259714 67259714 + Silent SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_004910 exon24 c.C3525T p.H1175H ATGCGAGTGCGAG 44 3 0.07 73 0 0 49 0 0.00 SHANK2 22941 hgsc.bcm.edu;mdanderson.org 37 11 70332654 70332654 + Nonsense_Mutation SNP G G T rs375960981 alternate_allele TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_133266 exon10 c.C1980A p.Y660X ATCAATGTAAAGA 96 4 0.04 131 0 0 0 0 NEU3 10825 mdanderson.org 37 11 74716883 74716883 + Silent SNP A A G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_006656 exon3 c.A732G p.T244T GGTCACATGGCAC 43 3 0.07 47 0 0 10 0 0.00 BCO2 83875 mdanderson.org 37 11 112071435 112071435 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_031938 exon7 c.G965T p.G322V CAGATGGGATAAG 113 5 0.04 159 0 0 0 0 DDX11 1663 ucsc.edu 37 12 31244689 31244689 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . DDX11 NM_030653 exon10 c.G1126A p.A376T CATGCGGCCACTC 241 26 0.11 142 5 0.0352112676 188 98 12 0.12 NOC4L 79050 mdanderson.org 37 12 132631841 132631841 + Missense_Mutation SNP G G T rs375866510 alternate_allele TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_024078 exon4 c.G361T p.A121S CTCAGCGCACTCC 54 3 0.06 60 0 0 155 0 0.00 SLC46A3 283537 mdanderson.org 37 13 29284959 29284959 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_181785 exon4 c.C1082A p.T361N ACAATAGTGAAAA 53 3 0.06 63 0 0 5 0 0.00 RFC3 5983 broad.mit.edu 37 13 34398073 34398073 + Missense_Mutation SNP T T A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . RFC3 NM_002915 exon3 c.T245A p.I82N AAAAAATTGAAAT 474 10 0.02 525 1 0.0019047619 40 111 0 0.00 CDH24 64403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 23524544 23524544 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 CDH24_ENST00000397359,colon,carcinoma,0,2 CDH24_ENST00000397359 NM_022478 exon3 c.C220T p.R74W CTCCCCGGTCAAC 92 15 0.16 80 0 0 0 2 20 4 0.20 LRRC16B 90668 broad.mit.edu 37 14 24534300 24534300 + Missense_Mutation SNP T T G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . LRRC16B NM_138360 exon33 c.T3214G p.S1072A CCGGGGTCCCCTA 112 10 0.09 84 5 0.0595238095 120 0 0 LTB4R 1241 broad.mit.edu 37 14 24785074 24785074 + Missense_Mutation SNP T T C novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . LTB4R NM_181657 exon2 c.T217C p.F73L GCTCCCTTTTTCC 122 3 0.02 113 1 0.0088495575 18 61 0 0.00 BMP4 652 mdanderson.org 37 14 54417212 54417212 + Silent SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_130851 exon4 c.C765T p.S255S CGATCGGCTAATC 49 3 0.06 60 0 0 249 0 0.00 ASB2 51676 broad.mit.edu;mdanderson.org 37 14 94417390 94417390 + Missense_Mutation SNP C C T rs142812400 bycluster TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 ASB2,lower_third,carcinoma,+2,1 ASB2 NM_001202429 exon6 c.G835A p.A279T TCTGGGCGGCCAC 173 6 0.03 147 0 0 71 1 12 0 0.00 C15orf37 283687 mdanderson.org 37 15 80215384 80215384 + RNA SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . . . . . GACCTGGCTGGCT 32 3 0.09 27 0 0 5 0 0.00 KIF7 374654 mdanderson.org 37 15 90176925 90176925 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_198525 exon12 c.C2584A p.R862S TGACGCGGTGCTG 43 3 0.07 28 0 0 23 0 0.00 BRICD5 283870 mdanderson.org 37 16 2259985 2259985 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_182563 exon4 c.G404A p.R135Q GTCTCCCGATCAC 58 5 0.09 42 0 0 16 0 0.00 ABCC1 4363 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 16225711 16225711 + Missense_Mutation SNP C C A rs45533037 bycluster;by1000genomes;alternate_allele TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_004996 exon27 c.C3885A p.F1295L GGAATTCCGGAAC 113 11 0.10 106 0 0 91 17 0.19 LOC653786 0 broad.mit.edu 37 16 22588015 22588015 + RNA SNP A A G rs62045993 bycluster TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . . . . . CTGAGCACATCGT 57 8 0.14 48 1 0.0208333333 22 2 0.09 PRSS53 339105 mdanderson.org 37 16 31097783 31097783 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 PRSS53,NS,carcinoma,0,1 PRSS53 NM_001039503 exon5 c.C538T p.R180C TGAGACGCAGGCG 43 3 0.07 61 0 0 0 1 3 0 0.00 MYH4 4622 broad.mit.edu 37 17 10368813 10368813 + Missense_Mutation SNP C C A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . MYH4 NM_017533 exon5 c.G451T p.A151S GTGGGGCCTCCTG 190 7 0.04 118 1 0.0084745763 349 0 0 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 307 19 0.06 292 13 0.0445205479 78 42 0.54 MYO15A 51168 broad.mit.edu 37 17 18025400 18025400 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . MYO15A NM_016239 exon2 c.G3286T p.A1096S ATCAGGGCCCCAG 94 10 0.11 75 2 0.0266666667 268 0 0 HEXIM1 0 broad.mit.edu 37 17 43229647 43229648 + RNA INS - - A rs141039553 bycluster;by1000genomes TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . HEXIM1 . . . . TTTATTTTTTTTT 8 4 0.50 4 0 0 25 0 0 SDK2 54549 broad.mit.edu 37 17 71503707 71503707 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . SDK2 NM_001144952 exon2 c.C94A p.P32T GCACAGGCTCTGT 100 4 0.04 99 1 0.0101010101 219 2 0 0.00 DLGAP1 9229 mdanderson.org 37 18 3879777 3879777 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001242761 exon4 c.C292A p.R98S GGATGCGGTTCGC 24 2 0.08 29 0 0 2 0 0.00 POLRMT 5442 mdanderson.org 37 19 619054 619054 + Missense_Mutation SNP C C A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_005035 exon15 c.G3210T p.W1070C TGTGACCCACTCC 94 5 0.05 69 1 0.0144927536 211 0 0.00 LINGO3 645191 mdanderson.org 37 19 2290612 2290612 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001101391 exon2 c.C1164A p.D388E CAGCGCGTCGCCG 23 2 0.09 29 0 0 3 0 0.00 LMNB2 84823 mdanderson.org 37 19 2434504 2434504 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_032737 exon7 c.G991A p.A331T CTTCAGCGGCACT 47 3 0.06 78 1 0.0128205128 308 0 0.00 EEF2 1938 mdanderson.org 37 19 3976653 3976653 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001961 exon15 c.G2476A p.D826N TGTTGTCGAAGGG 36 3 0.08 28 0 0 8078 10 0.00 LPHN1 22859 broad.mit.edu 37 19 14261858 14261858 + Missense_Mutation SNP C C G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 LPHN1,NS,carcinoma,0,1 LPHN1 NM_001008701 exon24 c.G4252C p.G1418R GGGGGCCGGGGGG 40 5 0.13 48 1 0.0208333333 107 1 35 0 0.00 RPL18A 6142 mdanderson.org 37 19 17972941 17972941 + Silent SNP G G A rs78185444 bycluster;byfrequency;by1000genomes TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_000980 exon3 c.G237A p.G79G CTTCGGGATCTGG 50 3 0.06 46 0 0 0.004 7497 1 0.00 KLHL26 55295 mdanderson.org 37 19 18779075 18779075 + Silent SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_018316 exon3 c.C868T p.L290L CAGGTGCTGCCCT 37 3 0.08 40 0 0 6 0 0.00 MOGS 7841 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 74691780 74691780 + Missense_Mutation SNP T T C novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_006302 exon2 c.A422G p.D141G ACACCGTCCCCCT 142 6 0.04 145 0 0 113 0 0.00 CCDC142 84865 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 74709738 74709738 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_032779 exon1 c.G227A p.R76Q GGCCCCCGCCTCC 54 12 0.22 54 0 0 3 1 0.33 ANKRD30BL 554226 mdanderson.org 37 2 132919099 132919099 + RNA SNP C C T rs199974298 bycluster TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . . . . . TGTCGTCTTCTTC 81 8 0.10 66 2 0.0303030303 0.009 0 0 C2orf57 165100 mdanderson.org 37 2 232457786 232457786 + Missense_Mutation SNP G G A rs369074059 TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_152614 exon1 c.G124A p.A42T TCTGTCGCATCCA 110 5 0.05 86 0 0 0 0 AQP12B 653437 mdanderson.org 37 2 241621835 241621835 + Silent SNP C C A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001102467 exon1 c.G420T p.L140L CAGGTGCAGGTCA 47 3 0.06 37 0 0 0 0 MYH7B 57644 mdanderson.org 37 20 33585097 33585097 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_020884 exon32 c.C3527T p.A1176V AGCGGGCAGCCCG 35 3 0.09 43 0 0 14 0 0.00 SLC9A8 23315 broad.mit.edu 37 20 48479536 48479536 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . SLC9A8 NM_001260491 exon9 c.G832T p.D278Y GCCCTTGACTACT 171 5 0.03 129 0 0 63 12 0 0.00 RBBP8NL 140893 mdanderson.org 37 20 60987688 60987688 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_080833 exon13 c.G1868A p.G623E TTGTCCCCAGGCT 37 3 0.08 42 0 0 0 0 IFNAR1 3454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 34715721 34715721 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_000629 exon4 c.G524A p.G175D CTTCAGGTGTAGA 108 29 0.27 92 0 0 75 16 0.21 OSBP2 23762 mdanderson.org 37 22 31266595 31266595 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_030758 exon3 c.G1033T p.E345X CCATCTGAGAGTG 72 4 0.06 59 0 0 2 0 0.00 SFI1 9814 mdanderson.org 37 22 32009152 32009152 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001007467 exon25 c.C2515T p.R839W GAGCAGCGGGCGA 33 3 0.09 28 0 0 29 0 0.00 HCLS1 3059 broad.mit.edu 37 3 121366225 121366225 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . HCLS1 NM_005335 exon4 c.C229A p.P77T CTTTGGGCCCTGA 253 5 0.02 259 0 0 78 112 0 0.00 IGSF10 285313 mdanderson.org 37 3 151164540 151164540 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_178822 exon4 c.G3229A p.A1077T ATGCTGCTGTGGC 51 3 0.06 50 0 0 1 0 0.00 CHRD 8646 broad.mit.edu 37 3 184101396 184101396 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . CHRD NM_003741 exon12 c.G1406T p.C469F TCCTGTGCCACAT 119 6 0.05 132 1 0.0075757576 149 9 0 0.00 ANKRD50 57182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 125599937 125599937 + Silent SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_020337 exon3 c.G636A p.G212G AACAGTCCCAGAT 148 36 0.24 151 0 0 11 4 0.36 ACSL1 2180 broad.mit.edu 37 4 185701510 185701510 + Silent SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . ACSL1 NM_001995 exon5 c.C453A p.G151G AAAGATGCCAATG 100 5 0.05 95 0 0 77 20 0 0.00 TRIO 7204 mdanderson.org 37 5 14488050 14488050 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_007118 exon48 c.G7313T p.R2438L ACGCGCGCGCTAG 27 2 0.07 34 0 0 12 0 0.00 IPO11 51194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 61772516 61772516 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001134779 exon9 c.G884A p.S295N GTAGAAGTATAGG 552 180 0.33 712 0 0 26 8 0.31 PCDH12 51294 broad.mit.edu 37 5 141335641 141335641 + Silent SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . PCDH12 NM_016580 exon1 c.C1776A p.I592I AGTCTCGATGGGC 66 3 0.05 64 0 0 133 13 0 0.00 DEK 7913 mdanderson.org 37 6 18258233 18258233 + Missense_Mutation SNP G G T rs200796384 bycluster;alternate_allele TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 DEK,caecum,carcinoma,+1,1 DEK NM_003472 exon4 c.C308A p.T103N TCATCGGTTTTCT 83 4 0.05 95 1 0.0105263158 1 1 296 2 0.01 NFKBIL1 4795 broad.mit.edu;mdanderson.org 37 6 31526067 31526067 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . NFKBIL1 NM_005007 exon4 c.G825T p.K275N ACCCAAGCCAACC 59 4 0.07 63 0 0 17 133 0 0.00 RNU6-71 100873774 hgsc.bcm.edu 37 6 56141616 56141616 + RNA SNP T T G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . . . . . TTTTGTTTTTTTT 51 5 0.10 59 0 0 0 0 RIMS1 0 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 72892035 72892035 + Missense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . RIMS1 NM_014989 exon6 c.G861T p.K287N CCTGAAGAGCGAG 302 31 0.10 370 1 0.0027027027 278 0 0 AKD1 221264 broad.mit.edu 37 6 109867322 109867322 + Silent SNP T T G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . AKD1 NM_001145128 exon26 c.A2973C p.P991P TCTTAATGGAGGA 83 7 0.08 107 5 0.046728972 223 0 0 FNDC1 84624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 159653823 159653823 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 FNDC1,colon,carcinoma,0,3 FNDC1 NM_032532 exon11 c.G2279A p.R760Q CATCACGGTCCAC 56 7 0.13 75 0 0 0 3 15 1 0.07 DLL1 28514 mdanderson.org 37 6 170593060 170593060 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_005618 exon9 c.C1307T p.S436L CTCCCCGAGAAGC 15 2 0.13 24 1 0.0416666667 9 0 0.00 GPR146 115330 mdanderson.org 37 7 1097335 1097335 + Missense_Mutation SNP C C T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_138445 exon1 c.C184T p.P62S ACCATGCCGGACG 43 3 0.07 35 0 0 3 0 0.00 HOXA13 3209 mdanderson.org 37 7 27238794 27238794 + Silent SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_000522 exon1 c.C903A p.L301L CTTCCAGAGGTGG 37 3 0.08 28 0 0 21 0 0.00 ZAN 7455 broad.mit.edu 37 7 100349991 100349991 + RNA SNP T T C novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 ZAN_ENST00000542585,NS,carcinoma,0,5 ZAN . . . . ACCATCTCCCCAG 124 12 0.10 100 3 0.03 658 5 1 0 0.00 ADAM32 203102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 39079164 39079164 + Silent SNP T T G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_145004 exon13 c.T1269G p.T423T TCGAACTTGTGTA 125 35 0.28 67 0 0 0 0 FRMPD1 22844 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 37746248 37746248 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . FRMPD1 NM_014907 exon16 c.G4219A p.A1407T TCCAGGGCACTGA 44 5 0.11 32 0 0 237 0 0 SECISBP2 79048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 91940430 91940430 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 SECISBP2,NS,carcinoma,0,1 SECISBP2 NM_024077 exon3 c.G271A p.A91T CCATATGCCTATT 163 54 0.33 178 0 0 0 1 23 9 0.39 PHF2 5253 mdanderson.org 37 9 96422835 96422835 + Missense_Mutation SNP A A G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_005392 exon12 c.A1691G p.K564R CCAAGAAGGGCAA 20 2 0.10 37 0 0 19 0 0.00 GALNT12 79695 mdanderson.org 37 9 101589071 101589071 + Silent SNP A A G rs146370762 bycluster;byfrequency;by1000genomes TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_024642 exon3 c.A579G p.G193G TTCGGGACTGCCC 42 3 0.07 69 0 0 0.005 7 0 0.00 WDR5 11091 mdanderson.org 37 9 137007545 137007545 + Splice_Site SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_017588 exon6 c.444+1G>A . GGATCCGTAAGTG 53 3 0.06 63 0 0 0 0 INPP5E 56623 mdanderson.org 37 9 139327038 139327038 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_019892 exon6 c.C1280A p.S427X TCACCTGCTGTGG 28 3 0.11 44 0 0 25 0 0.00 XG 7499 broad.mit.edu 37 X 2700164 2700164 + Missense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . XG NM_001141920 exon4 c.G185A p.G62D ACAGCGGTGGAAG 134 6 0.04 141 0 0 22 2 0 0.00 RPGR 6103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 38146264 38146264 + Missense_Mutation SNP C C G novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 . . NM_001034853 exon15 c.G1988C p.S663T CCTGAACTACCTT 139 51 0.37 134 0 0 0 0 ZNF541 84215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 48024612 48024612 + Nonsense_Mutation SNP G G A novel TCGA-2G-AAGC-01A-21D-A42Y-10 TCGA-2G-AAGC-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 3a571cff-caa7-4b12-b014-4abe54978d35 2eeea093-efbd-4c6b-a84d-a56b07d5e9f8 ZNF541,NS,carcinoma,+1,1 ZNF541 . . . . CATTTCGACTCTT 83 23 0.28 110 0 0 1 1 5 3 0.60