Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV . 100421113 bcgsc.ca 37 1 17077221 17077221 + RNA SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . GGAGGAGCAGCAG 131 14 0.11 61 1 0.0163934426 0 0 OTUD3 23252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 20234139 20234139 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_015207 exon8 c.C1097T p.A366V ACAAAGCCCTGGA 96 16 0.17 58 0 0 8 1 0.13 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150526002 150526002 + Missense_Mutation SNP C C A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_019032 exon6 c.C535A p.P179T AGCCCACCCAGAT 105 25 0.24 62 0 0 9 4 0.44 PGLYRP4 57115 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 153303252 153303252 + Missense_Mutation SNP G G C rs41310915 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_020393 exon9 c.C1113G p.F371L GTGTTTGAAATGA 166 45 0.27 175 0 0 0 0 PEAR1 375033 hgsc.bcm.edu 37 1 156875139 156875139 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 PEAR1,NS,haematopoietic_neoplasm,+1,2 PEAR1 NM_001080471 exon4 c.G230T p.R77L TGTACCGTCAGGT 29 20 0.69 15 1 0.0666666667 1 2 1 0 0.00 LAD1 3898 broad.mit.edu 37 1 201356276 201356276 + Silent SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . LAD1 NM_005558 exon3 c.C213A p.P71P TGGCTTGGGCACC 79 3 0.04 59 0 0 42 44 0 0.00 ADSS 159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 244600986 244600986 + Missense_Mutation SNP T T C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001126 exon2 c.A268G p.N90D TGACATTTGGATT 95 22 0.23 95 0 0 144 48 0.33 UBTD1 80019 mdanderson.org 37 10 99329931 99329931 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 UBTD1,colon,carcinoma,0,2 UBTD1 NM_024954 exon3 c.G335A p.R112H GCAATCGCTACCA 42 3 0.07 50 0 0 0 2 72 0 0.00 TCF7L2 6934 broad.mit.edu 37 10 114925530 114925530 + Silent SNP C C A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . TCF7L2 NM_001146274 exon14 c.C1608A p.P536P GCCACCCGCCCTC 126 3 0.02 124 1 0.0080645161 298 34 0 0.00 HSPA12A 259217 mdanderson.org 37 10 118439125 118439125 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 HSPA12A,colon,carcinoma,0,1 HSPA12A NM_025015 exon10 c.C1175A p.A392E GCAGCCGCCCTTT 95 5 0.05 119 0 0 0 1 3 0 0.00 SCGB2A2 4250 mdanderson.org 37 11 62038534 62038534 + Silent SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_002411 exon2 c.G237T p.V79V TGAGGTGTTTATG 48 3 0.06 46 0 0 0 0 RTN3 10313 broad.mit.edu 37 11 63525788 63525788 + Frame_Shift_Del DEL T T - novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . RTN3 NM_001265591 exon4 c.570delT p.A190fs CCAAGCTTTTTTT 78 7 0.09 86 0 0 104 226 0 0.00 TEX40 25858 mdanderson.org 37 11 64071021 64071021 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001039496 exon3 c.G420T p.E140D GGCAGAGCAGCAG 43 3 0.07 64 0 0 9 0 0.00 PC 5091 mdanderson.org 37 11 66639190 66639190 + Missense_Mutation SNP G G T rs368549197 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_000920 exon4 c.C289A p.L97M TGTGCAGGTAGGC 26 2 0.08 29 0 0 29 0 0.00 TCIRG1 10312 mdanderson.org 37 11 67818066 67818066 + Missense_Mutation SNP G G T rs370231613 alternate_allele TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_006019 exon19 c.G2349T p.M783I CGTGATGACCGTG 34 3 0.09 51 0 0 56 0 0.00 UVRAG 7405 mdanderson.org 37 11 75852429 75852429 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 UVRAG,NS,carcinoma,+1,1 UVRAG NM_003369 exon15 c.G2072A p.R691H GCTTCCGCCGGCC 32 3 0.09 44 0 0 1 1 55 0 0.00 FAT3 120114 broad.mit.edu;mdanderson.org 37 11 92086050 92086050 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 FAT3_ENST00000409404,NS,carcinoma,0,8 FAT3 NM_001008781 exon1 c.C772T p.R258C ATTGAGCGCATAA 92 4 0.04 127 0 0 1822 8 1 0 0.00 MLL2 8085 broad.mit.edu 37 12 49444814 49444814 + Silent SNP A A G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 MLL2_ENST00000301067,NS,carcinoma,0,1 MLL2 NM_003482 exon10 c.T2652C p.P884P AGGGGGAGGGAAC 138 5 0.04 122 0 0 1173 1 6 0 0.00 . 0 broad.mit.edu 37 14 20138372 20138372 + RNA DEL G G - novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . ACAAAAGAAAGAA 16 7 0.44 12 0 0 0 0 GOLGA6L1 283767 broad.mit.edu 37 15 22743373 22743373 + Missense_Mutation SNP G G C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . GOLGA6L1 NM_001001413 exon8 c.G1758C p.K586N GGAGAAGATACGA 24 3 0.13 33 0 0 20 0 0 GOLGA8S 653061 hgsc.bcm.edu 37 15 23606532 23606532 + RNA SNP C C G rs62001550 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . GAGCAGCAGGAGA 8 4 0.50 8 0 0 0 0 HERC2 8924 broad.mit.edu 37 15 28459392 28459392 + Missense_Mutation SNP G G A rs138059246 bycluster;byfrequency TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 HERC2,NS,carcinoma,0,1 HERC2 NM_004667 exon41 c.C6385T p.R2129C GCGGGCGCACCCT 31 4 0.13 43 1 0.023255814 501 1 10 0 0.00 SLC12A6 9990 mdanderson.org 37 15 34549912 34549912 + Silent SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_133647 exon5 c.C621A p.R207R TGTAAGGCGTAAA 53 3 0.06 74 0 0 7 0 0.00 MYO1E 4643 mdanderson.org 37 15 59453379 59453379 + Missense_Mutation SNP C C T rs202237883 bycluster TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_004998 exon24 c.G2678A p.G893D CGGGAGCCCCCTG 38 3 0.08 48 0 0 77 0 0.00 SMAD6 4091 broad.mit.edu 37 15 66996088 66996090 + In_Frame_Del DEL GCT GCT - novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 GCT GCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . SMAD6 NM_005585 exon1 c.492_494del p.164_165del CTCGCGGCTGCTG 6 2 0.33 6 0 0 14 3 0 0.00 COX5A 9377 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 15 75219171 75219171 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_004255 exon3 c.C275A p.A92D CGCAAAGCAGCAT 100 5 0.05 86 0 0 3045 1 0.00 PDPK1 5170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2647685 2647685 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_002613 exon14 c.G1588A p.G530R CCCAGCGGGAACG 144 41 0.28 146 0 0 62 24 0.39 SRRM2 23524 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 16 2819139 2819139 + Silent SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_016333 exon12 c.C7875T p.S2625S CTCCTCCTCTTCT 94 8 0.09 70 0 0 971 5 0.01 RABEP2 79874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 28925902 28925902 + Silent SNP A A C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_024816 exon5 c.T549G p.R183R CCGGGGACGTCTC 41 7 0.17 63 0 0 34 6 0.18 TGFB1I1 7041 broad.mit.edu 37 16 31484850 31484850 + Silent SNP T T C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . TGFB1I1 NM_001042454 exon2 c.T102C p.P34P CACCCCTCCCCCA 37 8 0.22 37 4 0.1081081081 60 21 0 0.00 CIAPIN1 57019 mdanderson.org 37 16 57463161 57463161 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_020313 exon9 c.G860A p.S287N GGGCAGCTGGCAC 52 3 0.06 40 0 0 536 0 0.00 OR1A1 8383 hgsc.bcm.edu;bcgsc.ca 37 17 3118967 3118967 + Missense_Mutation SNP C C G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_014565 exon1 c.C53G p.T18S GAGTTACTGGTCA 79 4 0.05 94 0 0 0 0 ALOX15 246 mdanderson.org 37 17 4535309 4535309 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001140 exon13 c.C1684T p.R562W GCAGCCGCATCGT 42 3 0.07 64 0 0 1 0 0.00 KCTD11 147040 mdanderson.org 37 17 7256675 7256675 + Silent SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 KCTD11,NS,carcinoma,0,1 KCTD11 NM_001002914 exon1 c.G414T p.R138R TTTGCGGGCCCGA 42 3 0.07 56 0 0 0 1 10 0 0.00 PIK3R5 23533 mdanderson.org 37 17 8808104 8808104 + Silent SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001142633 exon5 c.C402A p.L134L GGCCTTGAGTTCA 43 3 0.07 61 0 0 12 0 0.00 MYO18A 399687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27401817 27401817 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_078471 exon42 c.G6136A p.E2046K TGGCCTCTGTGTC 166 32 0.19 144 0 0 115 19 0.17 GIT1 28964 mdanderson.org 37 17 27903296 27903296 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001085454 exon15 c.C1580A p.P527H CCAAAGGGCTTCA 47 3 0.06 42 0 0 144 0 0.00 CCL18 6362 broad.mit.edu 37 17 34398343 34398343 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . CCL18 NM_002988 exon3 c.C212T p.A71V TCTGTGCTGACCC 375 6 0.02 285 0 0 9 8 0 0.00 KRTAP4-7 100132476 hgsc.bcm.edu 37 17 39240805 39240805 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 KRTAP4-7,caecum,carcinoma,+1,1 KRTAP4-7 NM_033061 exon1 c.G347T p.R116L GCTGCCGCCCCTG 50 7 0.14 37 0 0 1 1 0 0 . 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 43625492 43625492 + RNA SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . GGAGATGGTTTAA 538 75 0.14 370 2 0.0054054054 2 0 0.00 AMZ2P1 0 broad.mit.edu 37 17 62968690 62968690 + RNA SNP A A G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . TTCCACAAGTCTC 114 4 0.04 71 1 0.014084507 67 0 0.00 CAPS 828 mdanderson.org 37 19 5914617 5914617 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_080590 exon3 c.G127T p.A43S CTGGACGCTGATG 49 3 0.06 61 0 0 14 0 0.00 ICAM3 3385 ucsc.edu 37 19 10444835 10444835 + Splice_Site SNP C C A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . ICAM3 NM_002162 exon7 c.1441+1G>T . AGCTCACCCTCAA 37 4 0.11 40 0 0 29 9 0 0.00 TYK2 7297 mdanderson.org 37 19 10468498 10468498 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_003331 exon17 c.C2408A p.T803N AGGAGGGTGGCGC 52 3 0.06 75 0 0 22 0 0.00 ZBTB32 27033 mdanderson.org 37 19 36206029 36206029 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_014383 exon2 c.G501T p.K167N GCACAAGCACTCG 38 3 0.08 46 0 0 5 0 0.00 CAPNS1 826 mdanderson.org 37 19 36632054 36632054 + Silent SNP C C T rs17879825 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001749 exon2 c.C141T p.G47G CGGCGGCGGTGGT 113 6 0.05 95 2 0.0210526316 0.006 2 0 0.00 TRMT61B 55006 mdanderson.org 37 2 29093089 29093089 + Missense_Mutation SNP C C G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_017910 exon1 c.G55C p.G19R TGGTTCCGAGCCC 24 3 0.13 23 0 0 66 0 0.00 DYSF 8291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 71783195 71783195 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001130982 exon23 c.G2252T p.G751V TCGCAGGCTGCAG 90 28 0.31 78 0 0 46 8 0.17 TEKT4 150483 mdanderson.org 37 2 95540628 95540628 + Missense_Mutation SNP T T C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_144705 exon4 c.T821C p.L274P GCATCCTTCGCGA 24 3 0.13 30 0 0 0 0 FBLN7 129804 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 112896249 112896250 + Frame_Shift_Del DEL CG CG - novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 CG CG Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . FBLN7 NM_153214 exon1 c.16_17del p.6_6del GCTCTCCGCGCGC 118 19 0.16 123 0 0 49 1 0 0.00 SMPD4 55627 mdanderson.org 37 2 130910298 130910298 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_017951 exon20 c.C2431T p.R811C GGAAGCGCAGGCT 70 4 0.06 67 1 0.0149253731 249 0 0.00 GRB14 2888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 165353738 165353738 + Missense_Mutation SNP C C A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_004490 exon11 c.G1277T p.S426I GCAGAGCTCTGTG 188 45 0.24 201 0 0 14 6 0.43 CXCR1 3577 hgsc.bcm.edu 37 2 219029115 219029115 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_000634 exon2 c.C820A p.Q274K TCTCCTGGATCAC 119 5 0.04 95 0 0 0 0 SPHKAP 80309 mdanderson.org 37 2 228883882 228883882 + Missense_Mutation SNP T T C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 SPHKAP,larynx,carcinoma,+1,1 SPHKAP NM_030623 exon7 c.A1688G p.Q563R GCCACCTGAGTCA 52 3 0.06 47 0 0 1 1 0 0 DIS3L2 129563 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 233194705 233194705 + Missense_Mutation SNP A A G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_152383 exon15 c.A1922G p.N641S CCCTCAATGTGAG 80 26 0.33 80 0 0 20 6 0.30 MYLK2 85366 broad.mit.edu 37 20 30418685 30418685 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . MYLK2 NM_033118 exon9 c.G1288A p.A430T GGCCTGGCACGGA 164 5 0.03 159 0 0 76 1 0 0.00 PCIF1 63935 mdanderson.org 37 20 44567735 44567735 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_022104 exon3 c.C97T p.P33S CCAAAGCCAATCC 54 3 0.06 52 0 0 58 0 0.00 FAM3B 54097 mdanderson.org 37 21 42694879 42694879 + Missense_Mutation SNP G G A rs371282791 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_058186 exon2 c.G49A p.A17T GTCTTCGCCTCCT 26 3 0.12 23 0 0 1 0 0.00 SLC37A1 54020 broad.mit.edu 37 21 43974235 43974235 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . SLC37A1 NM_018964 exon11 c.G832A p.E278K AAGAGCGAAAAGA 43 4 0.09 24 2 0.0833333333 48 17 0 0.00 MCM3AP 8888 hgsc.bcm.edu;mdanderson.org 37 21 47664965 47664965 + Silent SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 MCM3AP,caecum,carcinoma,-1,2 MCM3AP NM_003906 exon23 c.C4794T p.G1598G AAGACCGCCCAGA 121 5 0.04 119 0 0 -1 2 130 0 0.00 PCNT 5116 broad.mit.edu 37 21 47831434 47831434 + Missense_Mutation SNP C C A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . PCNT NM_006031 exon28 c.C5447A p.A1816D GCCAGGCCCTGGA 39 4 0.10 36 1 0.0277777778 283 21 2 0.10 PEX26 55670 hgsc.bcm.edu 37 22 18568023 18568023 + Silent SNP A A G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001127649 exon4 c.A813G p.P271P TGATCCAGGTAAG 96 4 0.04 70 0 0 132 0 0.00 . 728441 broad.mit.edu 37 22 21563143 21563143 + Missense_Mutation SNP C C A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . TCCTGGCCCACCA 131 7 0.05 54 0 0 2 0 0.00 C22orf43 51233 broad.mit.edu 37 22 23974156 23974156 + Missense_Mutation SNP T T C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . C22orf43 NM_016449 exon1 c.A55G p.K19E CGTCCTTCCCCCT 247 7 0.03 150 3 0.02 18 1 0 0.00 UQCR10 29796 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 30163557 30163557 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001003684 exon1 c.C170T p.P57L CCATCCCTGACCT 58 16 0.28 92 0 0 121 36 0.30 GGA1 26088 mdanderson.org 37 22 38019586 38019586 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001001560 exon9 c.C778T p.R260W CGGATGCGGCCCA 86 4 0.05 91 0 0 68 0 0.00 HDAC10 83933 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 50688078 50688081 + Frame_Shift_Del DEL AAAG AAAG - novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 AAAG AAAG Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . HDAC10 NM_032019 exon6 c.547_550del p.183_184del ATCCTCAAAGAGA 69 15 0.22 69 0 0 29 27 0 0.00 CAMKV 79012 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 49899544 49899552 + In_Frame_Del DEL TTCTTGCAG TTCTTGCAG - novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 TTCTTGCAG TTCTTGCAG Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . CAMKV NM_024046 exon3 c.154_162del p.52_54del TGGAACTTCTTGC 80 22 0.28 78 0 0 84 68 30 0.44 STAB1 23166 mdanderson.org 37 3 52557127 52557127 + Missense_Mutation SNP G G A rs372724948 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_015136 exon63 c.G6997A p.A2333T GCCACTGCCAACT 23 3 0.13 34 0 0 38 0 0.00 SDAD1 55153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 76882374 76882374 + Silent SNP G G A rs143777133 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_018115 exon15 c.C1269T p.H423H ATCCTTGTGTGTT 117 35 0.30 125 0 0 0 161 70 0.43 . 0 broad.mit.edu 37 5 6674476 6674477 + RNA INS - - A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . ATCTATTAAAAAA 6 2 0.33 4 0 0 1 0 0.00 CTNND2 1501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 11397161 11397161 + Silent SNP C C T rs61749784 bycluster;byfrequency;by1000genomes TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001332 exon6 c.G594A p.T198T CTGGCCCGTAGCT 63 24 0.38 50 0 0 0.002 0 0 NKX2-5 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 172659730 172659730 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . NKX2-5 NM_004387 exon2 c.G817A p.A273T GGTAAGCGGCAGT 73 24 0.33 88 1 0.0113636364 42 0 0 GPRIN1 114787 broad.mit.edu;mdanderson.org 37 5 176024694 176024694 + Missense_Mutation SNP A A C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . GPRIN1 NM_052899 exon2 c.T2142G p.S714R CTCCAGACTCAGG 33 8 0.24 35 0 0 77 8 1 0.13 HK3 3101 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 5 176316733 176316733 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_002115 exon7 c.G643A p.D215N CCACGTCGATGTT 48 7 0.15 49 0 0 2 0 0.00 PRR7-AS1 340037 hgsc.bcm.edu 37 5 176867681 176867681 + RNA SNP C C T rs372493562 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . TCTGACCGTTGCC 98 18 0.18 82 0 0 0 0 NUP153 9972 mdanderson.org 37 6 17688695 17688695 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_005124 exon2 c.C266T p.A89V TCATCGGCATATA 133 5 0.04 99 1 0.0101010101 105 0 0.00 BTN2A3P 54718 hgsc.bcm.edu;broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 BTN2A3,NS,carcinoma,0,9 BTN2A3 . . . . ATGGAACCAGCTG 114 10 0.09 81 1 0.012345679 0 9 2 0 0.00 KLHDC3 116138 broad.mit.edu 37 6 42985386 42985386 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . KLHDC3 NM_057161 exon3 c.G284T p.R95L GCGGGCGGAATGA 105 5 0.05 95 0 0 23 362 0 0.00 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51512912 51512912 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_138694 exon63 c.G11315A p.R3772Q ACTCTTCGATTCT 80 21 0.26 81 0 0 0 0 IRAK1BP1 134728 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 79577463 79577463 + Missense_Mutation SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . IRAK1BP1 NM_001010844 exon1 c.G170A p.G57D TAAGCGGCACCTC 87 26 0.30 96 1 0.0104166667 18 7 3 0.43 OPRM1 4988 mdanderson.org 37 6 154428665 154428665 + Silent SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001145286 exon4 c.G1230A p.G410G TGCAGGGCAGTCT 53 3 0.06 58 0 0 0 0 RABGEF1 27342 ucsc.edu 37 7 66270306 66270306 + Missense_Mutation SNP A A G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . RABGEF1 NM_014504 exon8 c.A1000G p.N334D CAGTCTAATATCC 163 4 0.02 87 0 0 56 119 14 0.12 rescued with RNA-seq GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . . . . . CCGGGGTCCTTGA 187 6 0.03 100 1 0.01 0 0 SRPK2 6733 broad.mit.edu 37 7 104844187 104844187 + Silent SNP C C T rs150640356 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . SRPK2 NM_182692 exon3 c.G117A p.P39P TGGTGGCGGTGGA 117 6 0.05 74 1 0.0135135135 76 83 0 0.00 XRCC2 7516 broad.mit.edu;mdanderson.org 37 7 152357797 152357797 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . XRCC2 NM_005431 exon2 c.C110A p.S37X ACAGGTGAATCTT 80 5 0.06 50 0 0 30 47 0 0.00 WRN 7486 hgsc.bcm.edu 37 8 30945390 30945390 + Missense_Mutation SNP A A T rs149565907 bycluster;by1000genomes TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 WRN,NS,carcinoma,0,1 WRN NM_000553 exon12 c.A1530T p.E510D AGAAGAAGATGAT 62 3 0.05 53 0 0 0.001 0 1 20 0 0.00 YTHDF3 253943 broad.mit.edu 37 8 64099415 64099415 + Silent SNP A A G novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . YTHDF3 . . . . TGAAAAAGGGTCA 152 3 0.02 139 2 0.0143884892 13 130 0 0.00 MAPK15 225689 broad.mit.edu 37 8 144803971 144803971 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 MAPK15,bladder,carcinoma,-1,1 MAPK15 NM_139021 exon13 c.C1379T p.A460V AGGCTGCGGCTCA 87 3 0.03 71 0 0 32 1 3 0 0.00 GNAQ 2776 mdanderson.org 37 9 80537095 80537095 + Nonsense_Mutation SNP G G T rs200106152 by1000genomes TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_002072 exon2 c.C303A p.Y101X ATACTTGTATGGG 71 4 0.06 47 0 0 0 18 0 0.00 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 84609192 84609192 + Silent SNP G G A novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_001001670 exon4 c.G3807A p.K1269K ACAGAAGCAGGAG 85 29 0.34 56 0 0 0 0 FAM206A 54942 broad.mit.edu 37 9 111696846 111696846 + Splice_Site SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_017832 exon1 c.79+1G>T . AACCGGGTAAGTG 188 5 0.03 189 0 0 0 0 TRIM32 22954 mdanderson.org 37 9 119460603 119460603 + Missense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_012210 exon2 c.G582T p.R194S GCGCAGGGTCCAG 49 3 0.06 38 0 0 17 0 0.00 DENND1A 57706 broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 126144051 126144051 + Missense_Mutation SNP C C T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . DENND1A NM_020946 exon22 c.G2690A p.G897D ATCTGGCCAAAGA 173 28 0.16 184 1 0.0054347826 112 8 1 0.13 MAGEB10 139422 mdanderson.org 37 X 27840132 27840132 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . . NM_182506 exon3 c.G709T p.E237X GGAATTGAGCACT 43 3 0.07 53 0 0 0 0 ATRX 546 broad.mit.edu 37 X 76855029 76855029 + Missense_Mutation SNP T T C novel TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . ATRX NM_000489 exon25 c.A5807G p.K1936R TTCCCCTTTTTCC 294 6 0.02 232 0 0 833 42 0 0.00 CTAG2 30848 broad.mit.edu 37 X 153881676 153881676 + Silent SNP A A C rs370709312 TCGA-2G-AAGO-01A-11D-A42Y-10 TCGA-2G-AAGO-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 95579513-5f16-4bdc-bf4c-4d4d76a3d069 ce86540c-8488-46d3-9a6f-591f2f3b5be7 . CTAG2 NM_020994 exon1 c.T114G p.G38G CGTGGCACCCGCC 45 24 0.53 38 11 0.2894736842 88 1 0 0.00