Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PLEKHN1 84069 bcgsc.ca 37 1 909421 909421 + Missense_Mutation SNP C C A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . PLEKHN1 NM_032129 exon14 c.C1643A p.A548D CAGACGCCCCTCA 24 0 0.00 25 0 0 49 1 0 0.00 KIF17 57576 mdanderson.org 37 1 21044035 21044035 + Silent SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_020816 exon1 c.C165T p.D55D GGCGCCGTCGAAG 46 4 0.09 77 0 0 1 0 0.00 CELA3B 23436 mdanderson.org 37 1 22307358 22307358 + Silent SNP C C T rs7528300 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_007352 exon3 c.C171T p.T57T CCACACCTGTGGC 84 3 0.04 85 0 0 0 0 CYP4Z2P 0 broad.mit.edu 37 1 47348892 47348892 + RNA SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . ATGATGCTGTCCA 748 9 0.01 797 0 0 1 0 0.00 . 0 broad.mit.edu 37 1 121245721 121245721 + RNA DEL A A - novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . CAAAACAAAAAAA 6 2 0.33 9 0 0 0 0 . 0 broad.mit.edu 37 1 149400836 149400837 + RNA INS - - T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . ACAGAGATTTTTT 6 2 0.33 6 0 0 0 0 ILDR2 387597 mdanderson.org 37 1 166890129 166890129 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_199351 exon9 c.G1699A p.A567T ACCAAGCGTAGTA 12 2 0.17 20 0 0 5 0 0.00 SELP 6403 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 169581527 169581527 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_003005 exon6 c.G889A p.A297T CTAATGCAAATCC 161 28 0.17 131 0 0 9 0 0.00 TNR 7143 broad.mit.edu 37 1 175372735 175372735 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . TNR NM_003285 exon4 c.C517A p.P173T AGTGAGGGATATA 135 3 0.02 90 2 0.0222222222 399 1 0 0.00 TOR1AIP2 163590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 179820097 179820097 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001199260 exon5 c.G436A p.G146R CAGTTCCGTCACT 177 38 0.21 152 0 0 26 3 0.12 CACNA1S 779 ucsc.edu 37 1 201035437 201035437 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . CACNA1S NM_000069 exon21 c.G2665A p.A889T AGATGGCACTGGA 39 4 0.10 17 0 0 249 9 0 0.00 AVPR1B 553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 206224555 206224555 + Missense_Mutation SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_000707 exon1 c.G115A p.G39R GAGATCGGAGTCC 182 42 0.23 157 0 0 1 1 1.00 PIGR 5284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207110937 207110937 + Missense_Mutation SNP A A C novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_002644 exon4 c.T548G p.V183G GGATTTACATAAC 148 21 0.14 132 0 0 84 22 0.26 DIP2C 22982 bcgsc.ca 37 10 415572 415572 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . DIP2C NM_014974 exon18 c.C1993A p.P665T CCGTGGGCCTGTA 79 1 0.01 65 0 0 195 38 0 0.00 C10orf54 64115 mdanderson.org 37 10 73511467 73511467 + Silent SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_022153 exon6 c.C856T p.L286L GAGACAGGGGGGT 43 3 0.07 50 0 0 152 0 0.00 DUSP13 51207 mdanderson.org 37 10 76863743 76863743 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 DUSP13_ENST00000394707,NS,carcinoma,-1,1 DUSP13_ENST00000394707 NM_001007273 exon2 c.C92A p.A31D CGCTGGGCTTCCA 41 4 0.10 69 0 0 -1 1 2 0 0.00 DLG5 9231 mdanderson.org 37 10 79581552 79581552 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_004747 exon15 c.C2690A p.S897X GCATCTGAGCGGA 17 2 0.12 32 0 0 106 0 0.00 IDE 3416 mdanderson.org 37 10 94214294 94214294 + Silent SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_004969 exon25 c.T2967C p.P989P CACTTCAGGCTGC 46 3 0.07 82 0 0 51 0 0.00 VWA2 340706 bcgsc.ca 37 10 116044682 116044682 + Missense_Mutation SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . VWA2 NM_001272046 exon10 c.G950A p.G317D TGGACGGCTACCA 32 0 0.00 59 0 0 64 3 0 0.00 C10orf88 80007 mdanderson.org 37 10 124713659 124713659 + Silent SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 C10orf88,colon,carcinoma,-1,1 C10orf88 NM_024942 exon1 c.C36A p.R12R GGGGCGGCGGGTG 29 3 0.10 21 0 0 -1 1 23 0 0.00 INSC 387755 mdanderson.org 37 11 15212344 15212344 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001031853 exon6 c.G818T p.C273F CCTTGTGCCGCAT 44 3 0.07 99 0 0 9 0 0.00 MACROD1 28992 mdanderson.org 37 11 63918712 63918712 + Silent SNP G G A rs374513283 TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_014067 exon3 c.C516T p.A172A CTCACCGGCGTTG 24 2 0.08 36 0 0 24 0 0.00 KRTAP5-8 57830 bcgsc.ca 37 11 71249545 71249545 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 KRTAP5-8,NS,carcinoma,0,1 KRTAP5-8 NM_021046 exon1 c.C444T p.C148C CAGCTGCTGTAAG 29 1 0.03 54 0 0 28 1 0 0 SLC38A1 81539 bcgsc.ca 37 12 46622952 46622952 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . SLC38A1 NM_030674 exon5 c.G298A p.G100R GGATTCCAGTGTT 123 0 0.00 144 0 0 58 44 0 0.00 RAPGEF3 10411 mdanderson.org 37 12 48141596 48141596 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 RAPGEF3,colon,carcinoma,0,1 RAPGEF3 NM_001098531 exon14 c.G1372A p.V458I TGCAGACGTAGGT 22 3 0.14 30 0 0 0 1 27 0 0.00 HNRNPA1 3178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 12 54677642 54677642 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_031157 exon9 c.C954T p.Y318Y GAATTACAACAAT 68 12 0.18 56 0 0 6650 1575 0.24 RHOF 54509 broad.mit.edu 37 12 122231059 122231059 + Splice_Site SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . RHOF NM_019034 exon2 c.C225A p.A75A CTCACCGGCCGTG 68 3 0.04 83 0 0 6 35 0 0.00 NCOR2 9612 broad.mit.edu 37 12 124887093 124887093 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 NCOR2_ENST00000405201,NS,carcinoma,0,11 NCOR2 NM_006312 exon16 c.G1497A p.Q499Q CTGCTGCTGTTGT 85 5 0.06 68 5 0.0735294118 475 11 213 1 0.00 MAB21L1 4081 ucsc.edu;mdanderson.org 37 13 36049616 36049616 + Silent SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . MAB21L1 NM_005584 exon1 c.C660A p.G220G CTGCTTGCCGGCC 41 4 0.10 50 0 0 52 139 0 0.00 . 0 bcgsc.ca 37 14 19422774 19422774 + RNA SNP C C A rs78338598 TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . GGCTCCCGGCCCC 44 4 0.09 65 2 0.0307692308 0 0 SLC8A3 6547 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 14 70633871 70633871 + Silent SNP T T C novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_183002 exon2 c.A1269G p.G423G CATGTCTCCCCCT 78 5 0.06 103 0 0 16 0 0.00 PTPN21 11099 mdanderson.org 37 14 88945534 88945534 + Silent SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_007039 exon13 c.T2241C p.P747P GACGCGAGGGCAG 43 3 0.07 47 1 0.0212765957 9 0 0.00 FAM181A 90050 broad.mit.edu 37 14 94394839 94394839 + Missense_Mutation SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . FAM181A NM_138344 exon3 c.A394G p.R132G CTGAAAAGGGGGT 57 4 0.07 59 0 0 42 10 0 0.00 SPINT1 6692 broad.mit.edu 37 15 41149071 41149071 + Missense_Mutation SNP C C A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . SPINT1 NM_181642 exon11 c.C1488A p.H496Q CTTCCACGGACAC 120 3 0.03 116 0 0 28 213 0 0.00 SPTBN5 51332 mdanderson.org 37 15 42175409 42175409 + Silent SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_016642 exon9 c.C1572T p.T524T ACAGGCGGTGGAC 50 3 0.06 71 0 0 1 0 0.00 ODF3L1 161753 mdanderson.org 37 15 76019748 76019748 + Missense_Mutation SNP T T C novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_175881 exon4 c.T692C p.L231P TGGACCTCACGCC 52 3 0.06 75 0 0 4 0 0.00 LOC645752 0 broad.mit.edu 37 15 78217296 78217296 + RNA SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . GTGGCAACCACCA 108 4 0.04 124 2 0.0161290323 0 0 . 0 broad.mit.edu 37 15 84957462 84957466 + RNA DEL GTGGC GTGGC - novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 GTGGC GTGGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . TGTAGGGTGGCAT 7 4 0.57 5 0 0 0 0 AKAP13 11214 bcgsc.ca 37 15 86118561 86118561 + Splice_Site SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . AKAP13 NM_006738 exon6 c.861+1G>T . CTAATGGTAAGTC 115 0 0.00 116 0 0 394 0 0 ZNF174 7727 bcgsc.ca 37 16 3458752 3458752 + Missense_Mutation SNP C C A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . ZNF174 NM_003450 exon3 c.C1057A p.P353T GAGAGACCCTACA 112 0 0.00 142 0 0 32 66 0 0.00 PAGR1 79447 mdanderson.org 37 16 29828146 29828146 + Silent SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_024516 exon1 c.G300T p.A100A GCCTGCGGATGGG 46 3 0.07 49 0 0 259 0 0.00 CORO1A 11151 mdanderson.org 37 16 30198177 30198177 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001193333 exon5 c.G362T p.R121L CCCTGCGGGAGCC 37 3 0.08 54 0 0 171 0 0.00 SETD1A 9739 broad.mit.edu;mdanderson.org 37 16 30992480 30992480 + Silent SNP C C T rs377613466 TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . SETD1A NM_014712 exon17 c.C4791T p.Y1597Y CGAATACGTGGGT 86 5 0.06 72 0 0 143 188 1 0.01 RLTPR 146206 mdanderson.org 37 16 67683467 67683467 + Missense_Mutation SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001013838 exon20 c.G1864A p.G622R GCCATGGGGGACG 9 2 0.22 18 0 0 7 0 0.00 HYDIN 54768 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 70913326 70913326 + Silent SNP C C G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001270974 exon62 c.G10431C p.V3477V AACCGTCACTCGA 63 19 0.30 81 0 0 12 2 0.17 ZNF469 84627 mdanderson.org 37 16 88498332 88498332 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001127464 exon2 c.C4370T p.A1457V CATGTGCCGACCC 34 3 0.09 59 0 0 15 0 0.00 KRT16P1 0 broad.mit.edu 37 17 18345954 18345955 + RNA DEL CA CA - rs67478682 TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 CA CA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . CTCTCCCACAGTC 39 8 0.21 44 13 0.2954545455 0 0 RHBDL3 162494 broad.mit.edu 37 17 30615824 30615824 + Missense_Mutation SNP G G T rs140645420 alternate_allele TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . RHBDL3 NM_138328 exon4 c.G308T p.R103L ACAAGCGTTCCAA 209 4 0.02 175 1 0.0057142857 49 21 0 0.00 TMEM132E 124842 mdanderson.org 37 17 32964258 32964258 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_207313 exon10 c.C1962T p.Y654Y CCTCTACAGCCCA 64 4 0.06 105 0 0 6 0 0.00 ERBB2 2064 broad.mit.edu 37 17 37868702 37868702 + Splice_Site SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . ERBB2 NM_001005862 exon12 c.1058+1G>T . TGATGGGTAAGAG 128 4 0.03 135 0 0 429 9 0 0.00 MKNK2 2872 mdanderson.org 37 19 2043519 2043519 + Nonsense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_017572 exon6 c.C402A p.Y134X GCACTGGTACAGC 53 3 0.06 82 0 0 152 0 0.00 VAV1 7409 mdanderson.org 37 19 6833570 6833570 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_005428 exon17 c.C1642T p.R548W TGCCATCGGTGCC 56 3 0.05 94 0 0 23 0 0.00 CERS4 79603 mdanderson.org 37 19 8326962 8326962 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_024552 exon12 c.G1154T p.R385L CCGGGCGTCTGAC 21 3 0.14 30 0 0 159 1 0.01 BRD4 23476 mdanderson.org 37 19 15353857 15353857 + Missense_Mutation SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_058243 exon14 c.T3023C p.I1008T TGTTGGATGTGGG 24 3 0.13 29 1 0.0344827586 14 0 0.00 FBXO17 115290 mdanderson.org 37 19 39435736 39435736 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_148169 exon5 c.C593A p.A198D TCTCGAGCGCCCC 36 3 0.08 87 0 0 161 0 0.00 ELSPBP1 64100 mdanderson.org 37 19 48517554 48517554 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 ELSPBP1,brain,glioma,+1,1 ELSPBP1 NM_022142 exon3 c.G197T p.C66F AGTACTGCCAGAG 71 4 0.06 97 0 0 1 1 0 0 RPL18 6141 mdanderson.org 37 19 49119198 49119198 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_000979 exon6 c.C427A p.R143S CCTTGCGAGGACC 32 3 0.09 60 0 0 3704 1 0.00 HRC 3270 mdanderson.org 37 19 49656771 49656771 + Missense_Mutation SNP T T C novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_002152 exon1 c.A1724G p.E575G AGCCCCTCCTCCT 42 3 0.07 63 0 0 15 0 0.00 PRR12 57479 mdanderson.org 37 19 50100336 50100336 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_020719 exon4 c.G2744T p.S915I ACCGCAGCCCCAG 41 3 0.07 98 0 0 96 0 0.00 SIGLEC8 27181 mdanderson.org 37 19 51958842 51958842 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 SIGLEC8,NS,carcinoma,+1,1 SIGLEC8 NM_014442 exon4 c.G881A p.S294N GTCCAGCTCAGCC 45 3 0.07 91 0 0 1 1 5 0 0.00 PRPF31 26121 mdanderson.org 37 19 54629912 54629912 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_015629 exon9 c.C865T p.R289W CTGCGGCGGAAAG 66 5 0.08 84 0 0 201 0 0.00 EPN1 29924 mdanderson.org 37 19 56196955 56196955 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001130071 exon4 c.G755T p.R252L GGCTGCGGGAAGA 31 3 0.10 37 0 0 388 0 0.00 EML6 400954 broad.mit.edu 37 2 55106753 55106753 + Missense_Mutation SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . EML6 NM_001039753 exon16 c.A2414G p.K805R GGAAAAAGGGAGA 203 5 0.02 205 0 0 85 6 0 0.00 CCDC85A 114800 mdanderson.org 37 2 56411850 56411850 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001080433 exon1 c.G91T p.A31S CCGCCCGCGCCGG 25 2 0.08 29 0 0 3 0 0.00 MAT2A 4144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 2 85769043 85769043 + Missense_Mutation SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_005911 exon5 c.A497G p.E166G TGGCAGAACTACG 100 26 0.26 88 0 0 514 156 0.30 . 0 broad.mit.edu 37 2 91887904 91887905 + RNA INS - - T rs369805878 alternate_allele TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . ATTTTCCATTTTT 159 17 0.11 153 6 0.0392156863 0 0 TTN 7273 broad.mit.edu 37 2 179473629 179473629 + Missense_Mutation SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 TTN_ENST00000359218,NS,carcinoma,+1,10 TTN NM_001267550 exon274 c.C52109T p.P17370L GGTCCCGGTGTAT 63 3 0.05 45 0 0 18412 10 0 0 INO80D 54891 broad.mit.edu 37 2 206869700 206869700 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . INO80D NM_017759 exon11 c.C2476A p.H826N TTCCATGGGGTGA 122 3 0.02 146 0 0 134 5 0 0.00 DYTN 391475 mdanderson.org 37 2 207559536 207559536 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001093730 exon8 c.G785A p.S262N GACTTGCTGTGAA 52 3 0.06 70 0 0 0 0 COL6A3 1293 bcgsc.ca 37 2 238253730 238253730 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . COL6A3 NM_004369 exon34 c.C7133A p.A2378D ATGAGGGCACATT 151 0 0.00 164 1 0.006097561 608 1067 1 0.00 NINL 22981 mdanderson.org 37 20 25457291 25457291 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 NINL,NS,carcinoma,-1,1 NINL NM_025176 exon17 c.G2636A p.R879H TGCCTGCGGCGAG 22 3 0.14 27 1 0.037037037 -1 1 63 0 0.00 MLLT10P1 140678 hgsc.bcm.edu 37 20 29637851 29637851 + RNA SNP C C G rs148007340 TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . GGATTTCTTTCAA 16 5 0.31 10 0 0 24 0 0.00 DDX27 55661 broad.mit.edu 37 20 47858511 47858511 + Missense_Mutation SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . DDX27 NM_017895 exon17 c.A2072G p.K691R AAAAAAAGGGGGA 110 4 0.04 110 0 0 74 339 1 0.00 GAB4 128954 bcgsc.ca 37 22 17488891 17488891 + Silent SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . GAB4 NM_001037814 exon1 c.C114A p.G38G CACGTGGCCACTT 172 0 0.00 176 1 0.0056818182 95 0 0 POM121L9P 0 broad.mit.edu 37 22 24657088 24657088 + RNA DEL A A - novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . GGGAAGAGGCGGG 10 6 0.60 6 0 0 0 0 POM121L9P 0 broad.mit.edu 37 22 24657092 24657093 + RNA INS - - AGT rs10682297 alternate_allele TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . AGAGGCGGGTCCA 10 6 0.60 4 0 0 0 0 TFIP11 24144 mdanderson.org 37 22 26895573 26895573 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001008697 exon10 c.C826A p.Q276K CCTTCTGCTCCCG 30 3 0.10 64 0 0 100 0 0.00 SHANK3 85358 mdanderson.org 37 22 51169219 51169219 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_033517 exon22 c.G4633T p.A1545S GGCGGGGCCTCGT 12 2 0.17 15 0 0 21 0 0.00 NUP210 23225 mdanderson.org 37 3 13373825 13373825 + Silent SNP C C T rs147322542 TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_024923 exon29 c.G3903A p.S1301S GTTGGGCGACATT 53 3 0.06 69 0 0 0 147 0 0.00 MRPS25 64432 bcgsc.ca 37 3 15094113 15094115 + In_Frame_Del DEL CTC CTC - novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 CTC CTC Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . MRPS25 NM_022497 exon4 c.355_357del p.119_119del CTTTTTCTCCTCC 89 0 0.00 106 0 0 14 153 0 0.00 SCN11A 11280 broad.mit.edu 37 3 38991741 38991741 + Missense_Mutation SNP T T C novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . SCN11A NM_014139 exon1 c.A113G p.K38R GACTTCTTTTTCT 131 4 0.03 135 0 0 296 9 0 0.00 . 0 bcgsc.ca 37 4 9405207 9405207 + RNA SNP T T A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . CCATGTTGGGAGA 222 8 0.04 212 2 0.0094339623 0 0 MAML3 55534 broad.mit.edu 37 4 140640915 140640915 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . MAML3 NM_018717 exon6 c.G2967A p.G989G CGGCTGCCCAGCT 49 3 0.06 72 0 0 192 29 0 0.00 CLGN 1047 bcgsc.ca 37 4 141311836 141311836 + Silent SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . CLGN NM_001130675 exon15 c.C1698A p.I566I TTCTATGATTTCA 152 0 0.00 186 0 0 76 168 0 0.00 ADCY2 108 bcgsc.ca 37 5 7743791 7743791 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . ADCY2 NM_020546 exon15 c.C1882T p.L628L TCCGTCCTGGGCA 126 0 0.00 201 0 0 337 13 0 0.00 NADKD1 133686 mdanderson.org 37 5 36197730 36197730 + Missense_Mutation SNP G G T rs368195000 alternate_allele TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001085411 exon11 c.C1103A p.P368Q TCTTCCGGACTGT 47 3 0.06 73 0 0 74 0 0.00 NADKD1 133686 bcgsc.ca 37 5 36211999 36211999 + Silent SNP A A T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . NADKD1 NM_001085411 exon7 c.T807A p.L269L TGGCAGAAGTTGG 49 0 0.00 82 0 0 47 68 0 0.00 PCDHGA8 9708 hgsc.bcm.edu 37 5 140773214 140773214 + Silent SNP A A T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 PCDHGA8,NS,carcinoma,0,1 PCDHGA8 NM_014004 exon1 c.A834T p.A278A AGTGGCATACAAA 100 4 0.04 145 0 0 0 1 2 0 0.00 TNIP1 10318 mdanderson.org 37 5 150436453 150436453 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001252385 exon6 c.G501A p.T167T ACTCAGCGTGGTC 24 2 0.08 48 0 0 127 0 0.00 TBP 6908 hgsc.bcm.edu;mdanderson.org 37 6 170871016 170871016 + Silent SNP G G A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 TBP,NS,carcinoma,0,2 TBP NM_003194 exon3 c.G192A p.Q64Q ACAACAGCAGCAG 86 6 0.07 80 1 0.0125 0 2 93 0 0.00 ELFN1 392617 mdanderson.org 37 7 1785645 1785645 + Silent SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001128636 exon2 c.C1413T p.Y471Y CAAGTACGGGCCA 50 3 0.06 40 0 0 16 0 0.00 PSPH 5723 broad.mit.edu 37 7 56085002 56085002 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 PSPH,NS,carcinoma,0,2 PSPH NM_004577 exon6 c.G346A p.V116I GCTCTACAATACT 451 6 0.01 498 1 0.0020080321 23 2 77 0 0.00 SUMF2 25870 mdanderson.org 37 7 56146188 56146188 + Missense_Mutation SNP C C T rs149838149 bycluster;by1000genomes TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_015411 exon8 c.C865T p.R289W CGGGCCCGGGTCA 86 5 0.06 70 1 0.0142857143 0.001 300 10 0.03 WBSCR17 64409 mdanderson.org 37 7 71177063 71177063 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_022479 exon11 c.G1729T p.A577S GGCCTGGCTGGCA 70 4 0.06 67 0 0 29 0 0.00 GTF2IRD1 9569 mdanderson.org 37 7 74005172 74005172 + Missense_Mutation SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_001199207 exon24 c.A2513G p.N838S GCCTGAACCGGCC 56 3 0.05 74 0 0 182 0 0.00 ADCK2 90956 broad.mit.edu 37 7 140373547 140373548 + In_Frame_Ins INS - - ACCTCAGGCCCA novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . ADCK2 NM_052853 exon1 c.417_418insACCTCAGGCCCA p.E139delinsETSGP CACCGAGACCTCA 91 7 0.08 118 0 0 37 73 0 0.00 ZNF398 0 broad.mit.edu 37 7 148876752 148876752 + Silent SNP T T G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . ZNF398 NM_170686 exon6 c.T1788G p.G596G TGGGGGTGATAGT 59 12 0.20 68 9 0.1323529412 54 24 0 0.00 . 0 bcgsc.ca 37 8 56962832 56962832 + RNA SNP A A G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . TTCAGTATGTCTA 223 0 0.00 188 0 0 45 0 0.00 . 0 bcgsc.ca 37 9 44402012 44402012 + RNA SNP C C G novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . GCGGAGCGCCCGG 57 9 0.16 77 7 0.0909090909 25 3 0.12 WNK2 65268 mdanderson.org 37 9 96055381 96055381 + Silent SNP C C A novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_006648 exon22 c.C5634A p.S1878S GTCGTCCTACATC 47 3 0.06 57 0 0 82 0 0.00 LRRC37A5P 0 broad.mit.edu 37 9 114370698 114370698 + RNA DEL A A - novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . . . . . AGTGAGAAAAAAA 6 2 0.33 8 0 0 0 0 DFNB31 25861 bcgsc.ca 37 9 117185777 117185777 + Silent SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . DFNB31 NM_001173425 exon7 c.C1443A p.G481G AATGGTGCCTCTC 89 1 0.01 102 0 0 100 74 0 0.00 TOR2A 27433 mdanderson.org 37 9 130495633 130495633 + Missense_Mutation SNP C C A rs564754 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_130459 exon3 c.G624T p.W208C GCCCCCCCACTGT 97 3 0.03 118 0 0 19 0 0.00 SEC16A 9919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 9 139370740 139370740 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_014866 exon3 c.C1328A p.T443K CTCGCTGTGTCAC 128 74 0.58 137 0 0 95 56 0.59 MAMDC4 158056 mdanderson.org 37 9 139752857 139752857 + Missense_Mutation SNP T T G rs374940023 alternate_allele TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . NM_206920 exon22 c.T2680G p.C894G GGTTCCTGTGATT 17 2 0.12 16 0 0 28 0 0.00 ND4 4538 broad.mit.edu 37 MT 11014 11014 + Missense_Mutation SNP C C T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . . ENST00000361381 exon1 c.C255T p.S85S CTTATCCAGTGAA 3 3 1.00 14 0 0 0 0 PTCHD1 139411 broad.mit.edu 37 X 23398203 23398203 + Missense_Mutation SNP G G T novel TCGA-2G-AAGY-01A-11D-A42Y-10 TCGA-2G-AAGY-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq da2a7140-5541-4d62-8d1a-eb9ecab13e93 83598a70-86fa-44e5-833c-6d397c4dd186 . PTCHD1 NM_173495 exon2 c.G847T p.A283S ACCATGGCCATCC 194 5 0.03 112 0 0 213 0 0