Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
RERE	473	mdanderson.org	37	1	8421286	8421286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_012102	exon19	c.C2281A	p.L761M	TGGGCAGCTGAGG		16	3	0.19	19	0	0				26	0	0.00			
HIVEP3	59269	mdanderson.org	37	1	42046701	42046701	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_024503	exon4	c.C3768T	p.S1256S	CAGATGGCTTTCC		34	3	0.09	52	0	0				2	0	0.00			
KLF17	128209	mdanderson.org	37	1	44595437	44595437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_173484	exon2	c.G494T	p.G165V	CCACTGGAATCCC		49	3	0.06	70	0	0				0	0				
DENND2D	79961	mdanderson.org	37	1	111739831	111739831	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_024901	exon5	c.C471A	p.I157I	GCAGCTGATGATG		19	2	0.11	45	0	0				6	0	0.00			
GBAP1	0	broad.mit.edu	37	1	155185875	155185876	+	RNA	INS	-	-	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TTTTCTATTTTTT		7	3	0.43	5	0	0				1	0	0.00			
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	181765833	181765833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001205293	exon47	c.G6238A	p.G2080S	TCAGGGGGCAGGG		125	38	0.30	124	0	0				2	1	0.50			
PRG4	10216	broad.mit.edu	37	1	186276585	186276585	+	Silent	SNP	A	A	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PRG4	NM_005807	exon7	c.A1734C	p.P578P	TGCCCCAACTACC		96	21	0.22	74	4	0.0540540541		259		0	0				
NAV1	89796	bcgsc.ca	37	1	201778383	201778383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NAV1	NM_020443	exon21	c.C4299G	p.I1433M	CATCATCAAAGGG		312	0	0.00	400	0	0		143		19	0	0.00			
SYT2	127833	broad.mit.edu	37	1	202566020	202566020	+	Missense_Mutation	SNP	G	G	T	rs139376371	alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	SYT2	NM_001136504	exon9	c.C1125A	p.F375L	GCCCACGAAGATC		115	6	0.05	101	1	0.0099009901		51		8	0	0.00			
RYR2	6262	bcgsc.ca	37	1	237789007	237789007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RYR2	NM_001035	exon40	c.A6069C	p.L2023F	TGATTTAACAATT		73	0	0.00	65	0	0		1273		0	0				
ZNF672	79894	broad.mit.edu	37	1	249141630	249141630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ZNF672	NM_024836	exon4	c.C157T	p.R53W	TGTGCACGGGCTG		98	3	0.03	100	0	0		32		19	0	0.00			
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1578121	1578121	+	RNA	SNP	G	G	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	GTCCCAGTCTTTT		65	7	0.11	53	0	0				0	0				
EXOSC1	51013	mdanderson.org	37	10	99196205	99196205	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_016046	exon8	c.C585A	p.T195T	TTCTTAGGTCTGC		75	5	0.07	79	0	0				170	0	0.00			
LZTS2	84445	broad.mit.edu	37	10	102766682	102766682	+	Silent	SNP	T	T	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	LZTS2	NM_032429	exon5	c.T1767G	p.G589G	GCGGGGTGAGGAG		58	9	0.16	83	9	0.1084337349		57		30	1	0.03			
COL17A1	1308	mdanderson.org	37	10	105810657	105810657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_000494	exon26	c.C2041A	p.P681T	CTACAGGACCTGC		35	3	0.09	62	0	0				10	0	0.00			
RBM20	282996	mdanderson.org	37	10	112404242	112404242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001134363	exon1	c.C30A	p.D10E	CCAGGACGCGGAC		11	2	0.18	15	0	0				0	0				
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu	37	11	30032345	30032347	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	CTC	CTC					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	KCNA4	NM_002233	exon2	c.1880_1882del	p.627_628del	ACACTTCTCCTCC		88	42	0.48	169	0	0		158		0	0				
FOLH1	2346	bcgsc.ca	37	11	49204790	49204790	+	Silent	SNP	A	A	G	rs76509850	bycluster;byfrequency	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	FOLH1	NM_004476	exon7	c.T831C	p.Y277Y	ATAAGCATATTCT		134	3	0.02	191	2	0.0104712042		141		0	0				
FEN1	2237	mdanderson.org	37	11	61563052	61563052	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_004111	exon2	c.C219T	p.R73R	CATTCGCATGATG		41	3	0.07	32	0	0				108	0	0.00			
ZBTB3	79842	mdanderson.org	37	11	62520426	62520426	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_024784	exon2	c.C861A	p.G287G	TGAGATGCCAGAA		51	3	0.06	91	0	0				7	0	0.00			
C11orf95	65998	mdanderson.org	37	11	63533337	63533337	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001144936	exon2	c.G579A	p.E193E	TTCTTCCTCCTCC		26	2	0.08	38	1	0.0263157895				0	0				
ANKRD13D	338692	mdanderson.org	37	11	67058987	67058987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_207354	exon4	c.G392T	p.S131I	TCACCAGCTGGGG		42	3	0.07	47	0	0				45	0	0.00			
CNTN5	53942	bcgsc.ca	37	11	99944948	99944948	+	Missense_Mutation	SNP	T	T	C	rs200782641	bycluster	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	CNTN5	NM_001243270	exon12	c.T1502C	p.I501T	TTGTCATAGAGTG		178	0	0.00	503	0	0		324		0	0				
NNMT	4837	mdanderson.org	37	11	114168839	114168839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_006169	exon2	c.G321T	p.W107C	TGACTGGTCCCCA		37	3	0.08	96	0	0				20	0	0.00			
UBE4A	9354	mdanderson.org	37	11	118252157	118252157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_004788	exon12	c.C1949T	p.A650V	GCTTTGCCGATGA		48	3	0.06	129	0	0				0	0				
NTM	50863	broad.mit.edu	37	11	132180057	132180057	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NTM	NM_001144059	exon5	c.A713G	p.K238R	GACAAAAGGGGAC		105	4	0.04	307	0	0		253		0	0				
KRAS	3845	bcgsc.ca	37	12	25380275	25380275	+	Missense_Mutation	SNP	T	T	A	rs17851045	bycluster	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	KRAS_ENST00000256078,colon,carcinoma,0,429	KRAS	NM_004985	exon3	c.A183T	p.Q61H	CTCCTCTTGACCT		193	0	0.00	126	0	0		30930	429	115	0	0.00			
BICD1	636	broad.mit.edu	37	12	32369349	32369349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	BICD1	NM_001714	exon2	c.G382A	p.A128T	GTACAGGCAGAAA		205	4	0.02	116	0	0		89		123	0	0.00			
FGD4	121512	bcgsc.ca	37	12	32786595	32786599	+	Frame_Shift_Del	DEL	AAGAA	AAGAA	-	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	AAGAA	AAGAA					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	FGD4	NM_139241	exon15	c.1874_1878del	p.625_626del	ACAGTGAAGAAAA		215	0	0.00	116	0	0		86		38	0	0.00			
NELL2	4753	bcgsc.ca	37	12	45173782	45173782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	NELL2_ENST00000437801,NS,carcinoma,-1,2	NELL2	NM_001145107	exon5	c.G509A	p.G170D	CGATGGCCACTAC		217	0	0.00	177	0	0		286	2	1	0	0.00			
MYO1A	4640	mdanderson.org	37	12	57432204	57432204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005379	exon17	c.C1752A	p.N584K	GATGTAGTTGGGG		79	5	0.06	65	0	0				2	0	0.00			
FRS2	10818	bcgsc.ca	37	12	69964184	69964184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	FRS2	NM_001042555	exon7	c.T140C	p.L47S	TGATTTTATACAC		228	0	0.00	179	0	0		88		18	0	0.00			
E2F7	144455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	77449732	77449732	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_203394	exon3	c.T272G	p.I91S	GCACTAATGAGCA		224	43	0.19	151	0	0				7	3	0.43			
C12orf65	91574	bcgsc.ca	37	12	123741505	123741505	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	C12orf65	NM_001194995	exon3	c.A428C	p.K143T	GGAAAAAAAGAGC		207	0	0.00	199	0	0		15		127	0	0.00			
SCARB1	949	mdanderson.org	37	12	125270941	125270941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005505	exon11	c.C1363A	p.L455M	GCAGCAGGACGCA		51	3	0.06	49	0	0				35	0	0.00			
NAA16	79612	bcgsc.ca	37	13	41894924	41894924	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NAA16	NM_001110798	exon4	c.G366T	p.L122L	CTCACTGTTGCAG		75	1	0.01	96	0	0		74		5	0	0.00			
SCEL	8796	mdanderson.org	37	13	78142455	78142455	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001160706	exon7	c.G385T	p.E129X	TCACTGGAAGTAA		46	3	0.07	92	0	0				0	0				
EFNB2	1948	mdanderson.org	37	13	107145463	107145463	+	Silent	SNP	G	G	T	rs7995379	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	EFNB2,NS,carcinoma,-2,2	EFNB2	NM_004093	exon5	c.C927A	p.G309G	GTAGTCGCCGCTG		46	2	0.04	67	0	0		-2	2	3	0	0.00			
UNC79	57578	broad.mit.edu	37	14	94120138	94120138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	UNC79	NM_020818	exon37	c.G5720A	p.C1907Y	TGCGCTGCATCTT		142	5	0.04	123	0	0		366		2	0	0.00			
ATG2B	55102	broad.mit.edu	37	14	96781835	96781835	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ATG2B	NM_018036	exon22	c.C3447A	p.S1149S	TTCAGAGGAATAA		390	5	0.01	346	1	0.0028901734		169		3	0	0.00			
ZNF592	9640	broad.mit.edu	37	15	85345188	85345188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ZNF592	NM_014630	exon11	c.T3368C	p.L1123P	AGTCCCTTTTTCA		320	5	0.02	393	2	0.0050890585		95		47	0	0.00			
ZC3H7A	29066	bcgsc.ca	37	16	11859005	11859005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ZC3H7A	NM_014153	exon15	c.G1724C	p.C575S	TCAAAACATTTCT		123	0	0.00	112	0	0		72		11	0	0.00			
HIRIP3	8479	broad.mit.edu	37	16	30005338	30005338	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	HIRIP3	NM_003609	exon4	c.A1128G	p.G376G	GGGGCCTCCCCCT		120	6	0.05	167	0	0		45		37	0	0.00			
GPT2	84706	bcgsc.ca	37	16	46918656	46918656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	GPT2	NM_133443	exon2	c.G29C	p.R10P	TCCGGCGGGGCTG		53	0	0.00	40	0	0		40		9	0	0.00			
SGSM2	9905	mdanderson.org	37	17	2266157	2266157	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001098509	exon5	c.C484T	p.L162L	GCACTGCTGGCAG		45	3	0.07	70	0	0				9	0	0.00			
PIGW	284098	mdanderson.org	37	17	34893834	34893834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_178517	exon2	c.G884T	p.R295L	GCACACGGGTTGG		38	3	0.08	55	0	0				8	0	0.00			
KRTAP4-11	653240	broad.mit.edu	37	17	39274205	39274206	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	TC	TC					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	KRTAP4-11,NS,carcinoma,0,9	KRTAP4-11	NM_033059	exon1	c.G362A	p.R121K	CTGGGGTCTGCAG		34	6	0.18	38	0	0		94	9	0	0				
WNT3	7473	broad.mit.edu	37	17	44851046	44851046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	WNT3	NM_030753	exon2	c.C310A	p.R104S	CGAGGACGGGCCC		156	5	0.03	230	0	0		34		10	0	0.00			
CDC27	996	mdanderson.org	37	17	45219803	45219803	+	Splice_Site	SNP	C	C	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001256	exon12	c.1171-1G>T	.	ATTCTCCTGTAAA		39	3	0.08	53	0	0				2	0	0.00			
SNX11	29916	mdanderson.org	37	17	46196070	46196070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_013323	exon5	c.G235T	p.V79F	AGGCCTGTTCCTG		48	3	0.06	72	0	0				24	0	0.00			
ST6GALNAC1	55808	bcgsc.ca	37	17	74623260	74623260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ST6GALNAC1	NM_018414	exon4	c.G1061A	p.S354N	GGGAGGCTGGCCA		53	0	0.00	69	0	0		42		20	0	0.00			
RNF213	57674	bcgsc.ca	37	17	78321501	78321501	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RNF213	NM_001256071	exon29	c.C9366T	p.H3122H	CGTCCACCTCGGC		118	0	0.00	161	0	0		766		6	0	0.00			
CXXC1	30827	mdanderson.org	37	18	47810351	47810351	+	Silent	SNP	A	A	T	rs7228084	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001101654	exon10	c.T1338A	p.T446T	AAGGCGAGTGCGG		54	2	0.04	73	0	0				292	0	0.00			
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	10254526	10254526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001130823	exon29	c.G3032A	p.R1011Q	TTGATCCGGCCAA		337	72	0.21	277	0	0				126	29	0.23			
ANKLE1	126549	broad.mit.edu	37	19	17397494	17397501	+	Frame_Shift_Del	DEL	TGTGTGTT	TGTGTGTT	-	rs59660863	alternate_allele	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	TGTGTGTT	TGTGTGTT					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ANKLE1	.	.	.	.	TGTGTGTGTGTGT		19	10	0.53	18	0	0		27		3	0	0.00			
CCDC124	115098	mdanderson.org	37	19	18054150	18054150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001136203	exon4	c.G430T	p.A144S	GTGGAGGCGCGCA		32	3	0.09	21	0	0				411	0	0.00			
GATAD2A	54815	broad.mit.edu	37	19	19606951	19606951	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	GATAD2A_ENST00000360315,right_lower_lobe,carcinoma,0,2	GATAD2A	NM_017660	exon7	c.G847T	p.G283X	ATTCAGGGACAGA		100	5	0.05	84	0	0		81	2	238	0	0.00			
ZNF708	7562	mdanderson.org	37	19	21476977	21476977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_021269	exon4	c.C791A	p.S264Y	TTTGAGGACCGGT		30	3	0.10	43	0	0				6	0	0.00			
LYPD3	27076	mdanderson.org	37	19	43967294	43967294	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014400	exon4	c.C528T	p.N176N	GGTGACGTTGCCG		39	3	0.08	53	0	0				26	0	0.00			
.	0	ucsc.edu	37	19	53418570	53418570	+	Silent	SNP	T	T	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TGTCAATAGACCC		50	11	0.22	73	7	0.095890411				6	0	0.00			
NEB	4703	broad.mit.edu	37	2	152382707	152382707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NEB	NM_001271208	exon150	c.C22120A	p.L7374M	CCAGCAGGATCTG		155	5	0.03	158	0	0		1697		8	0	0.00			
XIRP2	129446	broad.mit.edu	37	2	168114492	168114492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	XIRP2	NM_001199143	exon11	c.G1535A	p.C512Y	GGAACTGCAAAAA		258	5	0.02	264	0	0		914		0	0				
.	0	broad.mit.edu;ucsc.edu	37	2	241922506	241922506	+	RNA	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	CCTACAGGGAAGA		76	19	0.25	61	0	0				0	0				
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	242189261	242189261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005336	exon12	c.C1507T	p.R503C	CCATGCGAGATGC		35	12	0.34	44	0	0				186	55	0.30			
RBL1	5933	broad.mit.edu	37	20	35627253	35627253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RBL1	NM_002895	exon22	c.C3116A	p.A1039E	GATTCTGCATCAC		167	5	0.03	132	1	0.0075757576		114		16	0	0.00			
LAMA5	3911	bcgsc.ca	37	20	60886012	60886012	+	Silent	SNP	C	C	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	LAMA5	NM_005560	exon74	c.G10227T	p.G3409G	CCGAGTCCCGAGG		91	0	0.00	74	0	0		268		148	0	0.00			
BAGE	85319	broad.mit.edu	37	21	11065359	11065360	+	RNA	INS	-	-	T	rs147270665		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	TTTAAGATTTTTT		6	2	0.33	6	0	0				0	0				
BRWD1	54014	bcgsc.ca	37	21	40582800	40582800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	BRWD1	NM_018963	exon35	c.A3956G	p.K1319R	TGTTTCTTCCAGT		124	0	0.00	145	0	0		325		6	0	0.00			
BRD1	23774	mdanderson.org	37	22	50217264	50217264	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014577	exon1	c.C702T	p.C234C	CATGTCGCAGAAG		51	3	0.06	38	0	0				13	0	0.00			
MIOX	55586	mdanderson.org	37	22	50927708	50927708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_017584	exon7	c.G570T	p.M190I	CCTCATGTCCTGG		47	3	0.06	30	0	0				0	0				
PLXND1	23129	broad.mit.edu;mdanderson.org	37	3	129324383	129324383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PLXND1	NM_015103	exon1	c.G1100T	p.R367L	AAGAGCCGCTCCC		12	6	0.50	25	0	0		149		1	0	0.00			
COL6A5	256076	broad.mit.edu	37	3	130134524	130134524	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	COL6A5	NM_153264	exon23	c.A4797G	p.K1599K	AGAAAAAGGAAGC		547	4	0.01	644	1	0.001552795		205		0	0				
LAMP3	27074	mdanderson.org	37	3	182841955	182841955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_014398	exon6	c.G1165A	p.A389T	CGATGGCCCCAAT		129	5	0.04	123	0	0				4	0	0.00			
PDS5A	23244	bcgsc.ca	37	4	39839559	39839559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PDS5A	NM_001100399	exon32	c.G3927C	p.L1309F	TGCTTCCAAACCC		96	0	0.00	139	0	0		114		52	0	0.00			
GSX2	170825	mdanderson.org	37	4	54966518	54966518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_133267	exon1	c.C7A	p.R3S	ATGTCGCGCTCCT		48	3	0.06	70	1	0.0142857143				0	0				
EPHA5	2044	mdanderson.org	37	4	66270181	66270181	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_182472	exon8	c.C1701T	p.S567S	TTGATCGCTGGAT		67	4	0.06	77	1	0.012987013				0	0				
SDAD1	55153	broad.mit.edu	37	4	76903125	76903125	+	Silent	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	SDAD1	NM_018115	exon2	c.C156A	p.P52P	TTTGCTGGGTTTA		70	4	0.06	81	1	0.012345679		47		23	0	0.00			
FRAS1	80144	mdanderson.org	37	4	79284696	79284696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_025074	exon21	c.G2452T	p.A818S	TGTGCAGCTGATC		51	3	0.06	77	0	0				2	0	0.00			
ARHGAP24	83478	bcgsc.ca	37	4	86491797	86491797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	ARHGAP24	NM_001025616	exon2	c.A103G	p.T35A	GTCAAGACTTGGC		110	0	0.00	141	0	0		116		2	0	0.00			
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	125592523	125592523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_020337	exon4	c.G1909A	p.V637M	AATCCACTTTTAC		94	52	0.55	121	0	0				2	0	0.00			
DMXL1	1657	mdanderson.org	37	5	118511022	118511022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_005509	exon26	c.C6748T	p.H2250Y	GGTAGTCATAACT		46	3	0.07	49	0	0				5	0	0.00			
NSD1	64324	bcgsc.ca	37	5	176636782	176636782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	NSD1	NM_022455	exon5	c.C1382G	p.T461R	ACTGCACAAATGA		115	0	0.00	199	0	0		416		9	0	0.00			
DEK	7913	mdanderson.org	37	6	18264096	18264096	+	Missense_Mutation	SNP	C	C	G	rs147127829	bycluster;byfrequency;by1000genomes	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_003472	exon2	c.G123C	p.E41D	CTCCTCCTCGTCG		128	5	0.04	132	0	0	0.001			18	0	0.00			
GUSBP2	0	broad.mit.edu	37	6	26864090	26864091	+	RNA	INS	-	-	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	AGGGCATCCCCCA		10	2	0.20	7	0	0				0	0				
KCTD20	222658	broad.mit.edu	37	6	36454762	36454762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	KCTD20	NM_173562	exon8	c.A1070G	p.K357R	GGGAAAAGGAAGA		144	4	0.03	145	1	0.0068965517		37		16	0	0.00			
RNF8	9025	bcgsc.ca	37	6	37358600	37358600	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	RNF8	NM_183078	exon7	c.T1319A	p.F440Y	GAGGATTCTCTCT		65	0	0.00	88	0	0		78		137	0	0.00			
RRP36	88745	mdanderson.org	37	6	42993067	42993067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_033112	exon3	c.G345T	p.K115N	TAAAAAGGTAAGG		62	3	0.05	71	0	0				85	0	0.00			
CUL9	23113	mdanderson.org	37	6	43154177	43154177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	CUL9,NS,carcinoma,-1,1	CUL9	NM_015089	exon4	c.G1235A	p.G412D	ACAACGGCATTCC		72	4	0.06	46	0	0		-1	1	1	0	0.00			
CUL9	23113	mdanderson.org	37	6	43183047	43183047	+	Silent	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_015089	exon30	c.C5919T	p.S1973S	CCAGAGCGAAACC		20	2	0.10	24	0	0				15	0	0.00			
.	0	broad.mit.edu	37	7	47093180	47093180	+	RNA	DEL	C	C	-	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	.	.	.	.	AGTCCTCCCCCCA		6	2	0.33	5	0	0				15	0	0.00			
CASD1	64921	broad.mit.edu	37	7	94147626	94147626	+	Silent	SNP	A	A	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	CASD1	NM_022900	exon3	c.A342G	p.E114E	AGAAGAAGGAAAT		176	4	0.02	138	0	0		70		4	0	0.00			
MUC17	140453	mdanderson.org	37	7	100681533	100681533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001040105	exon3	c.C6836A	p.T2279N	GAACGACTCCATT		124	8	0.06	86	0	0				0	0				
COG5	0	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	106888937	106888937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	COG5	NM_006348	exon17	c.A1850G	p.H617R	AGAGCATGAATAG		63	9	0.14	64	0	0		78		27	4	0.15			
TRPV6	55503	mdanderson.org	37	7	142573303	142573303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_018646	exon8	c.G1040A	p.C347Y	TAGATGCAGCACA		18	2	0.11	35	0	0				0	0				
PCMTD1	115294	bcgsc.ca	37	8	52733143	52733143	+	Missense_Mutation	SNP	A	A	G	rs111785933	bycluster	TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	PCMTD1	NM_052937	exon6	c.T842C	p.V281A	TGTTTAACTCTCT		186	13	0.07	176	4	0.0227272727		73		43	0	0.00			
PRUNE2	158471	mdanderson.org	37	9	79259771	79259771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_015225	exon12	c.C8612T	p.T2871M	TCGGCCGTATATT		126	5	0.04	114	1	0.0087719298				15	0	0.00			
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	114356535	114356535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001146108	exon3	c.A119C	p.E40A	AAAGCTTCAAGCA		111	55	0.50	132	0	0				85	28	0.33			
SLC2A6	11182	mdanderson.org	37	9	136340191	136340191	+	Silent	SNP	G	G	A	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_001145099	exon6	c.C819T	p.C273C	GGGCCGGCACACG		41	3	0.07	45	0	0				6	0	0.00			
CNKSR2	22866	bcgsc.ca	37	X	21519642	21519642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	CNKSR2	NM_001168647	exon8	c.C746T	p.P249L	AGTCACCTGCAGA		234	0	0.00	206	0	0		158		0	0				
ZXDB	158586	mdanderson.org	37	X	57618621	57618621	+	Missense_Mutation	SNP	T	T	C	rs368802496		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	.	NM_007157	exon1	c.T140C	p.L47P	TGCTGCTCCGGGG		12	2	0.17	17	0	0				0	0				
DOCK11	139818	bcgsc.ca	37	X	117680026	117680026	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2G-AAHP-01A-12D-A42Y-10	TCGA-2G-AAHP-10A-01D-A433-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a1cc9688-b055-48ba-a634-7f51a8df3220	6cc28f85-5c08-46da-89e5-536025497482	.	DOCK11	NM_144658	exon6	c.C505G	p.Q169E	ATAAAACAAGGCT		59	0	0.00	73	0	0		185		1	0	0.00