Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SLC2A7 155184 bcgsc.ca 37 1 9074839 9074839 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . SLC2A7 NM_207420 exon7 c.C804A p.H268Q AGACAGGTGGCCC 86 0 0.00 50 1 0.02 56 1 0 0.00 PTCHD2 57540 bcgsc.ca 37 1 11580781 11580781 + Silent SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . PTCHD2 NM_020780 exon10 c.C2238T p.F746F GGTGTTCGCCAGC 300 2 0.01 159 1 0.0062893082 193 1 0 0.00 CROCCP2 0 broad.mit.edu 37 1 16946455 16946456 + RNA INS - - GCTCACGCTGCA novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TCCTCCTGCTCAC 128 9 0.07 83 0 0 10 0 0.00 KLHDC7A 127707 broad.mit.edu 37 1 18809307 18809307 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . KLHDC7A NM_152375 exon1 c.G1832T p.R611L TGGACCGCTGGGA 144 3 0.02 63 0 0 60 0 0 FAM110D 79927 bcgsc.ca 37 1 26487994 26487994 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_024869 exon2 c.G212A p.R71H CGGTCCGCCGGGG 189 0 0.00 106 1 0.0094339623 1 0 0.00 RPL5 6125 hgsc.bcm.edu;broad.mit.edu 37 1 93299200 93299201 + Frame_Shift_Del DEL AG AG - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_000969 exon3 c.171_172del p.57_58del ACAAACAGAGATA 49 17 0.35 48 0 0 1926 0 0.00 DCLRE1B 64858 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 114448290 114448290 + Missense_Mutation SNP T T A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_022836 exon1 c.T82A p.F28I CTCTTCTTCTTGT 174 26 0.15 109 0 0 6 1 0.17 FAM5B 57795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 177249621 177249621 + Silent SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_021165 exon8 c.C1309T p.L437L ACTTTCCTGGAAC 311 68 0.22 287 0 0 0 0 . 0 bcgsc.ca 37 1 189959978 189959978 + RNA SNP A A G novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TTTTTCACTGTCC 16 0 0.00 23 0 0 0 0 FAM5C 339479 bcgsc.ca 37 1 190068175 190068175 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 FAM5C,NS,carcinoma,+1,3 FAM5C NM_199051 exon8 c.C1274G p.S425W GTGCACGAGTGCG 65 0 0.00 101 0 0 343 3 0 0 EPRS 2058 broad.mit.edu 37 1 220151968 220151968 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 EPRS,NS,carcinoma,0,1 EPRS NM_004446 exon28 c.C4003A p.L1335I CACTGAGTAATCG 83 5 0.06 105 0 0 140 1 235 1 0.00 . 0 broad.mit.edu 37 1 247903046 247903047 + RNA DEL TA TA - rs59359555 bycluster;by1000genomes;alternate_allele TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 TA TA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TTTTTTTAAAATT 12 4 0.33 6 0 0 0 0 FRMD4A 55691 broad.mit.edu 37 10 13699134 13699142 + In_Frame_Del DEL CGCCCCCCG CGCCCCCCG - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 CGCCCCCCG CGCCCCCCG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . FRMD4A NM_018027 exon22 c.2447_2455del p.816_819del ACACACCGCCCCC 6 2 0.33 6 0 0 108 0 0 CSGALNACT2 55454 hgsc.bcm.edu 37 10 43659372 43659372 + Nonsense_Mutation SNP C C T rs76607193 bycluster;byfrequency TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 CSGALNACT2,trunk,malignant_melanoma,0,1 CSGALNACT2 NM_018590 exon5 c.C1039T p.R347X CGTGGACGAGGAC 81 4 0.05 101 0 0 0.003 0 1 9 0 0.00 FAM21B 55747 broad.mit.edu 37 10 47948782 47948782 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . FAM21B NM_018232 exon29 c.C3691T p.P1231S GCCGCACCTGAAC 433 133 0.31 659 0 0 31 59 25 0.42 PTDSS2 81490 hgsc.bcm.edu;broad.mit.edu 37 11 488541 488541 + Missense_Mutation SNP G G T rs34809643 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_030783 exon8 c.G748T p.V250L ATGGACGTGCTCG 66 4 0.06 46 0 0 88 0 0.00 MUC6 4588 bcgsc.ca 37 11 1016801 1016801 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . MUC6 NM_005961 exon31 c.C6000G p.H2000Q CTGAGGGTGTGAT 322 11 0.03 386 6 0.0155440415 408 1 0 0.00 ASRGL1 80150 broad.mit.edu 37 11 62105556 62105556 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . ASRGL1 NM_001083926 exon2 c.G107A p.G36D GCTACGGCATCCT 73 4 0.05 52 0 0 25 142 0 0.00 MTA2 9219 bcgsc.ca 37 11 62365527 62365527 + Silent SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . MTA2 NM_004739 exon6 c.C459T p.Y153Y AGCTTGGTATTTG 117 0 0.00 128 0 0 54 31 0 0.00 MAP4K2 5871 bcgsc.ca 37 11 64566925 64566925 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . MAP4K2 NM_004579 exon14 c.C1021G p.R341G TCCTGCGTGGGGC 107 0 0.00 109 0 0 83 29 0 0.00 PPP1CA 5499 broad.mit.edu 37 11 67168607 67168607 + Missense_Mutation SNP A A G novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . PPP1CA NM_001008709 exon2 c.T152C p.L51P GATTTCAGGCACA 84 4 0.05 85 0 0 83 456 0 0.00 TAS2R8 50836 bcgsc.ca 37 12 10959286 10959286 + Missense_Mutation SNP C C G novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . TAS2R8 NM_023918 exon1 c.G294C p.W98C GGTAATCCACATA 180 0 0.00 96 0 0 42 0 0 ABCC9 10060 bcgsc.ca 37 12 22061069 22061069 + Missense_Mutation SNP A A G novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . ABCC9 NM_005691 exon9 c.T1397C p.L466P GGCGCAAGGAGCA 404 0 0.00 303 1 0.00330033 411 1 0 0.00 FAM101A 144347 broad.mit.edu 37 12 124798964 124798964 + Missense_Mutation SNP A A C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . FAM101A NM_181709 exon3 c.A301C p.T101P CGGACCACCCTGC 52 13 0.25 29 3 0.1034482759 10 11 0 0.00 . 0 broad.mit.edu 37 14 19114215 19114215 + RNA DEL T T - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . CTCAAGTTGAACT 6 2 0.33 5 0 0 0 0 L2HGDH 79944 bcgsc.ca 37 14 50713845 50713847 + In_Frame_Del DEL AGG AGG - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AGG AGG Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . L2HGDH NM_024884 exon10 c.1321_1323del p.441_441del AGCAGCAGGAGAA 164 0 0.00 228 0 0 33 9 0 0.00 SERPINA10 51156 bcgsc.ca 37 14 94756510 94756510 + Silent SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . SERPINA10 NM_001100607 exon2 c.C421T p.L141L AAGGCAGGAGCCC 145 0 0.00 135 0 0 83 1 0 0.00 CEP170B 283638 hgsc.bcm.edu;broad.mit.edu 37 14 105352457 105352457 + Silent SNP G G A rs372643760 TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001112726 exon11 c.G2025A p.P675P AGACCCGGGCCTC 34 5 0.15 21 0 0 0 0 AHNAK2 113146 bcgsc.ca 37 14 105416870 105416870 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 AHNAK2_ENST00000333244,NS,carcinoma,+2,1 AHNAK2 NM_138420 exon7 c.C4918A p.L1640M CCTCCAGCTGCGC 230 0 0.00 172 0 0 719 1 0 0 DISP2 85455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 40656718 40656718 + Silent SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_033510 exon4 c.G576A p.R192R GGCCCGGCTGCCC 73 35 0.48 54 0 0 1 1 1.00 EIF3J 8669 hgsc.bcm.edu 37 15 44829418 44829418 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_003758 exon1 c.G26C p.G9A CGGCGGGGGACTC 396 76 0.19 197 0 0 2 0 0.00 MYEF2 50804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 48450208 48450208 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_016132 exon9 c.A967G p.K323E GTGTTTTACCATC 129 28 0.22 176 0 0 1 0 0.00 USP8 9101 hgsc.bcm.edu 37 15 50782530 50782530 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001128610 exon14 c.C2042T p.P681L ACCCACCGGAAAT 154 7 0.05 172 0 0 18 0 0.00 ZNF592 9640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85326876 85326876 + Missense_Mutation SNP A A C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_014630 exon4 c.A970C p.K324Q AGCCCCAAAATGC 117 25 0.21 146 0 0 12 2 0.17 ZNF592 9640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85327404 85327404 + Missense_Mutation SNP C C A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_014630 exon4 c.C1498A p.P500T CTCCTGCCCAAAG 69 12 0.17 68 0 0 25 13 0.52 NMRAL1 57407 bcgsc.ca 37 16 4519318 4519318 + Silent SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . NMRAL1 NM_020677 exon3 c.C189T p.V63V CATGATGACCTGG 59 0 0.00 55 0 0 31 22 0 0.00 . 0 bcgsc.ca 37 16 32403532 32403532 + RNA SNP T T A rs75037542 bycluster TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TTCTTATGAAAAT 68 13 0.19 90 8 0.0888888889 0 0 SLC12A3 6559 bcgsc.ca 37 16 56913028 56913028 + Silent SNP A A T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . SLC12A3 NM_001126108 exon10 c.A1224T p.T408T TGACACAGTGACC 77 0 0.00 74 0 0 99 1 0 0.00 HSF4 3299 hgsc.bcm.edu;broad.mit.edu 37 16 67203680 67203680 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001040667 exon15 c.T1471C p.S491P AGTCCCTCCCCCT 53 6 0.11 41 0 0 5 0 0.00 DPH1 1801 broad.mit.edu 37 17 1939269 1939269 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . DPH1 NM_001383 exon4 c.C299T p.T100M GGTTCACGGAGGC 85 3 0.04 58 0 0 32 42 0 0.00 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10309436 10309436 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 MYH8,NS,carcinoma,+1,1 MYH8 NM_002472 exon21 c.C2354T p.A785V ATTTGGGCTAATT 65 15 0.23 89 0 0 1 1 0 0 GPATCH8 23131 bcgsc.ca 37 17 42513867 42513867 + Silent SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . GPATCH8 NM_001002909 exon4 c.C240A p.G80G ACCCATGCCCATG 54 0 0.00 65 0 0 114 0 0 HOXB2 3212 broad.mit.edu 37 17 46622130 46622132 + In_Frame_Del DEL AGG AGG - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AGG AGG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . HOXB2 NM_002145 exon1 c.142_144del p.48_48del CTCGAAAGGAGGA 95 7 0.07 59 0 0 23 21 0 0.00 USP36 57602 bcgsc.ca 37 17 76810500 76810500 + Silent SNP G G A rs139221124 bycluster;byfrequency;by1000genomes TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . USP36 NM_025090 exon11 c.C1158T p.Y386Y CTTCACGTAGCAG 31 0 0.00 39 0 0 243 30 0 0.00 FEM1A 55527 broad.mit.edu 37 19 4793691 4793691 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . FEM1A NM_018708 exon1 c.G1825T p.A609S ATGGACGCCACCA 30 3 0.10 21 0 0 41 15 0 0.00 ANKLE1 126549 broad.mit.edu 37 19 17397500 17397501 + Frame_Shift_Del DEL TT TT - rs10606406 alternate_allele TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 TT TT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . ANKLE1 . . . . TGTGTGTTTGTGT 13 8 0.62 18 0 0 27 8 0 0.00 . 0 broad.mit.edu 37 19 19944580 19944580 + RNA DEL T T - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TTAATCTTTTTTT 7 2 0.29 7 0 0 0 0 LYPD4 147719 bcgsc.ca 37 19 42342975 42342975 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . LYPD4 NM_173506 exon3 c.C191A p.T64K ACTAGCGTCTCCT 46 0 0.00 50 0 0 30 0 0 SYMPK 8189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 46345588 46345588 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_004819 exon9 c.C1007G p.A336G TTGCGGGCGATCT 64 19 0.30 90 0 0 76 35 0.46 IZUMO1 284359 hgsc.bcm.edu;broad.mit.edu 37 19 49248527 49248527 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_182575 exon3 c.A254G p.K85R GACCCCTTTTGCA 77 4 0.05 121 0 0 0 0 KIDINS220 57498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 8919088 8919088 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_020738 exon19 c.A2552G p.N851S CTTGCATTGCTTA 78 20 0.26 105 0 0 4 0 0.00 XDH 7498 bcgsc.ca 37 2 31602747 31602747 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . XDH NM_000379 exon13 c.C1228T p.P410S TGTAGGGGATCTC 84 0 0.00 98 0 0 191 1 0 0.00 PKDCC 91461 bcgsc.ca 37 2 42275878 42275878 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . PKDCC NM_138370 exon1 c.G539T p.R180L GCGTGCGCGAGTT 54 0 0.00 29 0 0 21 54 0 0.00 MRPS5 64969 bcgsc.ca 37 2 95753180 95753180 + Silent SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . MRPS5 NM_031902 exon12 c.A1215G p.K405K GTCCAGTTTGACG 86 0 0.00 113 0 0 52 431 0 0.00 KANSL3 55683 bcgsc.ca 37 2 97276835 97276835 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001115016 exon10 c.G1127A p.G376E GGAAACCCAAGGC 103 0 0.00 89 0 0 8 0 0.00 . 55041 broad.mit.edu 37 2 132110862 132110862 + Silent SNP G G C rs370398581 TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . CGCTCCGGCTCTC 56 5 0.09 39 1 0.0256410256 0 0 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 152484132 152484132 + Missense_Mutation SNP C C T rs377180119 TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001271208 exon69 c.G10048A p.D3350N CCACATCGCTGAC 171 31 0.18 188 0 0 0 0 CRYGB 1419 broad.mit.edu 37 2 209007463 209007463 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 CRYGB,trunk,malignant_melanoma,+1,1 CRYGB NM_005210 exon3 c.A427G p.R143G ACTGCCTCCCCCT 218 6 0.03 200 1 0.005 24 1 3 0 0.00 TNS1 7145 bcgsc.ca 37 2 218751314 218751314 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . TNS1 NM_022648 exon11 c.C547T p.P183S ACAAGGGCTTGTT 126 0 0.00 98 0 0 251 6 0 0.00 ALPPL2 251 bcgsc.ca 37 2 233271791 233271791 + Missense_Mutation SNP G G C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . ALPPL2 NM_031313 exon2 c.G92C p.W31S ACTTCTGGAACCG 75 0 0.00 80 0 0 36 93 0 0.00 . 339766 bcgsc.ca 37 2 234727321 234727321 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TTGTGGGGCCCTT 154 0 0.00 137 0 0 0 0 GDF5 8200 bcgsc.ca 37 20 34025393 34025394 + Frame_Shift_Ins INS - - T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . GDF5 NM_000557 exon1 c.316_317insA p.P106fs GCTTGGGTTCAGG 80 0 0.00 57 0 0 66 0 0 . 128500 bcgsc.ca 37 20 44728480 44728480 + RNA SNP G G A rs73308794 bycluster;by1000genomes TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TCCGAGGAGGCGG 74 0 0.00 59 0 0 0 0 PI4KAP2 0 broad.mit.edu 37 22 21846329 21846329 + RNA DEL C C - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . PI4KAP2 . . . . GCGGGGCGGGGGG 17 8 0.47 8 0 0 11 22 1 0.05 APOBEC3A 200315 hgsc.bcm.edu 37 22 39357586 39357586 + Silent SNP T T C rs202076860 bycluster TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 APOBEC3A,caecum,carcinoma,+1,1 APOBEC3A NM_145699 exon3 c.T369C p.R123R ACTGCGTATCTTC 49 5 0.10 65 2 0.0307692308 0.001 1 1 7 0 0.00 ZC3H7B 23264 bcgsc.ca 37 22 41742035 41742035 + Silent SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZC3H7B NM_017590 exon14 c.C1488T p.Y496Y TAAGTACGGGGAT 62 0 0.00 51 0 0 82 20 0 0.00 IQCF6 440956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 51812955 51812955 + Missense_Mutation SNP C C T rs370141442 TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001143833 exon2 c.G8A p.R3H GTCCGGCGCACCA 115 19 0.17 88 0 0 0 0 PRICKLE2 166336 bcgsc.ca 37 3 64142837 64142837 + Splice_Site SNP C C A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . PRICKLE2 NM_198859 exon6 c.600+1G>T . CTCTAACCTCATC 192 0 0.00 220 0 0 88 0 0 CASR 846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 122002841 122002841 + Silent SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001178065 exon7 c.C2070T p.R690R CCTGCGCCAGCCG 157 60 0.38 85 0 0 0 0 SEMA5B 54437 broad.mit.edu 37 3 122640965 122640967 + In_Frame_Del DEL CGA CGA - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 CGA CGA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . SEMA5B NM_001256347 exon12 c.1645_1647del p.549_549del GGTGCCCGACTCT 108 8 0.07 47 0 0 303 0 0 USP46 64854 bcgsc.ca 37 4 53492336 53492336 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . USP46 NM_022832 exon4 c.A410G p.Q137R TCCTCCTGAAGGA 106 0 0.00 144 0 0 38 2 0 0.00 FAT4 79633 bcgsc.ca 37 4 126237899 126237899 + Silent SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 FAT4_ENST00000394329,larynx,carcinoma,+2,2 FAT4 NM_024582 exon1 c.T333C p.L111L GGTCCTTTCCAGC 55 0 0.00 60 0 0 1752 2 0 0 SMARCA5 8467 bcgsc.ca 37 4 144445568 144445571 + Frame_Shift_Del DEL AGAA AGAA - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 AGAA AGAA Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . SMARCA5 NM_003601 exon4 c.468_471del p.156_157del ATTAACAGAAAGC 240 0 0.00 371 0 0 73 29 0 0.00 CDC23 8697 broad.mit.edu 37 5 137524750 137524750 + Missense_Mutation SNP A A G novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . CDC23 NM_004661 exon16 c.T1711C p.F571L GGAAAAAGGGAGC 106 4 0.04 142 1 0.0070422535 46 56 0 0.00 EBF1 1879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 158158144 158158144 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_024007 exon11 c.A1058G p.D353G CCATAATCGATGG 49 21 0.43 80 0 0 1 1 1.00 ABT1 29777 bcgsc.ca 37 6 26598339 26598339 + Splice_Site SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . ABT1 NM_013375 exon2 c.438+1G>T . CTCAAGGTGAGAA 100 0 0.00 105 0 0 39 0 0 REV3L 5980 bcgsc.ca 37 6 111804004 111804004 + Missense_Mutation SNP C C A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . REV3L NM_002912 exon1 c.G88T p.A30S CAGGGGCCTGGGT 119 0 0.00 75 0 0 386 0 0 . 100287768 bcgsc.ca 37 6 121102580 121102580 + RNA SNP C C A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . TCCAAGCCCTTTC 21 0 0.00 23 0 0 0 0 GRID2IP 392862 hgsc.bcm.edu 37 7 6547896 6547901 + In_Frame_Del DEL CTGAGC CTGAGC - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 CTGAGC CTGAGC Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_001145118 exon13 c.2260_2265del p.754_755del GGGGGGCTGAGCG 72 0 0.00 38 0 0 0 0 SP4 6671 broad.mit.edu 37 7 21468306 21468306 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 SP4,colon,carcinoma,0,1 SP4 NM_003112 exon2 c.G19A p.E7K AAGAAGGAGGAGG 39 5 0.13 55 1 0.0181818182 91 1 0 0 GPNMB 10457 hgsc.bcm.edu;broad.mit.edu 37 7 23286485 23286486 + Frame_Shift_Del DEL TC TC - novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 TC TC Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_002510 exon1 c.8_9del p.3_3del GGAATGTCTCTAC 88 21 0.24 84 0 0 10 0 0.00 NYAP1 222950 bcgsc.ca 37 7 100086782 100086782 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_173564 exon4 c.C1438T p.P480S GGTCCACCCCTGG 84 0 0.00 54 0 0 3 0 0.00 ZAN 7455 broad.mit.edu 37 7 100331729 100331729 + RNA SNP A A G novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . ZAN . . . . AATAAAAGGAGTC 161 4 0.02 148 0 0 658 0 0 WDR60 55112 hgsc.bcm.edu 37 7 158704304 158704304 + Missense_Mutation SNP G G T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_018051 exon12 c.G1524T p.L508F TCTCTTGGATCTA 114 5 0.04 132 0 0 4 0 0.00 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 77775665 77775665 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . NM_024721 exon11 c.G9715A p.D3239N CATGTCGATCCTA 109 28 0.26 93 0 0 0 0 LRRCC1 85444 broad.mit.edu 37 8 86019547 86019547 + Missense_Mutation SNP C C T novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 LRRCC1,colon,carcinoma,0,2 LRRCC1 NM_033402 exon1 c.C17T p.A6V CGGCGGCGGTGGT 169 7 0.04 68 0 0 212 2 2 0 0.00 SCRIB 23513 bcgsc.ca 37 8 144893427 144893427 + Missense_Mutation SNP C C A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 SCRIB,larynx,carcinoma,0,1 SCRIB NM_015356 exon10 c.G995T p.G332V CAGCCCCCGATCT 140 0 0.00 71 0 0 192 1 66 0 0.00 SMARCA2 6595 bcgsc.ca 37 9 2115838 2115838 + Missense_Mutation SNP A A C rs281875240 alternate_allele TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . SMARCA2 NM_139045 exon25 c.A3473C p.D1158A CCCAAGACCGAGC 229 0 0.00 199 0 0 313 27 0 0.00 CYTB 0 hgsc.bcm.edu;broad.mit.edu 37 MT 15657 15657 + Missense_Mutation SNP T T C novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . ENST00000361789 exon1 c.T911C p.I304T CAATAATCCCCAT 35 19 0.54 17 0 0 0 0 RBMXL3 139804 broad.mit.edu 37 X 114425196 114425196 + Missense_Mutation SNP G G A rs12399211 bycluster;by1000genomes TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . RBMXL3 NM_001145346 exon1 c.G1192A p.D398N TCGCCCGACGCCC 85 6 0.07 34 0 0 83 0 0 SELO 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50655406 50655406 + Missense_Mutation SNP G G A novel TCGA-2G-AAKG-01A-11D-A42Y-10 TCGA-2G-AAKG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 87b627bf-e42a-4f5f-9e22-7e8a479d5b29 86018e7d-245a-41de-93d6-ff5b5d81db55 . . . . . . GAGCCCGGCTGGA 47 13 0.28 24 0 0 38 8 0.21