Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PLEKHN1 84069 mdanderson.org 37 1 909350 909350 + Silent SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_032129 exon14 c.A1572G p.G524G GAAGGGAGCCCTG 20 2 0.10 36 0 0 4 0 0.00 ACAP3 116983 mdanderson.org 37 1 1231205 1231205 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_030649 exon18 c.T1616C p.L539P GGCCGCAGGCACT 18 3 0.17 20 0 0 28 0 0.00 MEGF6 1953 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 1 3440791 3440791 + Silent SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001409 exon5 c.C501A p.T167T GTTGTGGGTTCGG 100 5 0.05 129 0 0 1 0 0.00 TFAP2E 339488 mdanderson.org 37 1 36054040 36054040 + Silent SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_178548 exon4 c.G672A p.R224R CGGCCGGCTTTCA 41 3 0.07 50 0 0 0 0 OSCP1 127700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 36888403 36888403 + Missense_Mutation SNP A A T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_145047 exon6 c.T715A p.Y239N CTCCATAAAGTTC 106 21 0.20 120 0 0 27 6 0.22 KCNA2 3737 mdanderson.org 37 1 111136543 111136543 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001204269 exon5 c.C1043A p.A348D GTTACAGCTGGTG 44 3 0.07 52 0 0 0 0 LOC148696 0 broad.mit.edu;ucsc.edu;mdanderson.org 37 1 207992469 207992469 + Missense_Mutation SNP C C A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . ATCTCCCGGCTCC 89 15 0.17 68 0 0 0 0 PLXNA2 5362 broad.mit.edu 37 1 208205034 208205034 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . PLXNA2 NM_025179 exon29 c.T5126C p.L1709P AGGGGGAGAGCGC 200 4 0.02 174 1 0.0057471264 178 138 0 0.00 LAMB3 3914 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 209799360 209799361 + Frame_Shift_Del DEL CA CA - novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 CA CA Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . LAMB3 NM_000228 exon14 c.1609_1610del p.537_537del GGAAATCACAGTC 113 37 0.33 95 0 0 136 0 0 KIN 22944 broad.mit.edu 37 10 7820886 7820886 + Missense_Mutation SNP T T C novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . KIN NM_012311 exon5 c.A473G p.K158R TTTTTCTTTTTCT 138 3 0.02 152 1 0.0065789474 39 32 0 0.00 ITGA8 8516 mdanderson.org 37 10 15761727 15761727 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_003638 exon1 c.C44A p.P15Q ATCAGCGGCGCCT 11 2 0.18 11 0 0 0 0 . 256815 bcgsc.ca;mdanderson.org 37 10 23592330 23592330 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . ATATTTGTTTTGA 181 14 0.08 142 0 0 0 0 MMRN2 79812 mdanderson.org 37 10 88702582 88702582 + Silent SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_024756 exon6 c.C1959A p.L653L CCAGCCGAGCGCC 17 2 0.12 17 0 0 1 0 0.00 PDZD7 79955 mdanderson.org 37 10 102772009 102772009 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001195263 exon12 c.C1756T p.H586Y CCTCGTGCACATA 38 3 0.08 24 0 0 0 0 PDCD4 27250 broad.mit.edu 37 10 112647501 112647501 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . PDCD4 NM_014456 exon6 c.A634G p.K212E GAGGGGAAGGCTA 173 3 0.02 141 0 0 39 12 1 0.08 rescued with RNA-seq MKI67 4288 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 129901783 129901783 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002417 exon13 c.C8321T p.P2774L GGAGCCGGTGTCT 133 9 0.07 156 0 0 6 0 0.00 NLRP6 171389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 281495 281495 + Silent SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_138329 exon4 c.C1761T p.P587P CTGCCCCGGAGTG 50 12 0.24 51 0 0 0 0 MUC6 4588 bcgsc.ca 37 11 1016801 1016801 + Missense_Mutation SNP G G C novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . MUC6 NM_005961 exon31 c.C6000G p.H2000Q CTGAGGGTGTGAT 390 16 0.04 405 8 0.0197530864 408 0 0 MUC2 4583 mdanderson.org 37 11 1093434 1093434 + Silent SNP C C T rs12786901 bycluster TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002457 exon30 c.C5253T p.T1751T CACCACCACGGTG 26 5 0.19 33 1 0.0303030303 0 0 FOLH1 2346 bcgsc.ca 37 11 49204790 49204790 + Silent SNP A A G rs76509850 bycluster;byfrequency TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . FOLH1 NM_004476 exon7 c.T831C p.Y277Y ATAAGCATATTCT 137 12 0.09 110 0 0 141 0 0 SLC22A20 0 broad.mit.edu 37 11 64989730 64989730 + RNA DEL C C - novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . SLC22A20 . . . . CCAAGTCCTCTGT 6 2 0.33 6 0 0 36 0 0 LTBP3 4054 mdanderson.org 37 11 65306612 65306612 + Missense_Mutation SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001130144 exon28 c.G3851A p.C1284Y GCTTTGCAGACGC 11 3 0.27 19 0 0 37 0 0.00 TECTA 7007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 121028809 121028809 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_005422 exon13 c.A4565G p.D1522G TGCCCGACATCTC 88 66 0.75 115 0 0 0 0 ERC1 23085 broad.mit.edu 37 12 1292505 1292505 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . ERC1 NM_178040 exon11 c.A2075G p.K692R TGAAAAAGGACTC 731 7 0.01 314 0 0 95 2 0 0.00 DDX11 1663 broad.mit.edu 37 12 31238044 31238044 + Frame_Shift_Del DEL A A - novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . DDX11 NM_030653 exon5 c.622delA p.K208fs GAGGAGAAAAAGG 634 8 0.01 319 0 0 188 16 0 0.00 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57600263 57600263 + Silent SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002332 exon76 c.G11598A p.E3866E CTCTGAGTACCAG 49 27 0.55 62 0 0 19 9 0.47 HECTD4 283450 mdanderson.org 37 12 112601498 112601498 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001109662 exon74 c.C12343T p.R4115W GCAGCCGCAGGCT 47 3 0.06 46 0 0 1 0 0.00 TMEM132C 92293 broad.mit.edu 37 12 129028614 129028614 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . TMEM132C NM_001136103 exon3 c.G1087T p.A363S ACCGTGGCCTGCC 141 5 0.04 153 0 0 142 0 0 DCT 1638 ucsc.edu 37 13 95131234 95131234 + Silent SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . DCT NM_001129889 exon1 c.C276T p.H92H GGTCCGGTGGAAG 40 4 0.10 43 0 0 186 0 0 KLF13 51621 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 31619961 31619961 + Silent SNP G G C novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_015995 exon1 c.G546C p.S182S ATCTTCGCACCTC 66 17 0.26 80 0 0 2 0 0.00 CORO2B 10391 mdanderson.org 37 15 69011560 69011560 + Silent SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_006091 exon10 c.A1158G p.G386G GCTGGGAGGCATC 56 4 0.07 54 0 0 0 0 IL16 3603 mdanderson.org 37 15 81598276 81598276 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001172128 exon17 c.G3448T p.A1150S GGGCTGGCCTCCC 46 3 0.07 76 0 0 22 0 0.00 SEMA4B 10509 hgsc.bcm.edu 37 15 90764683 90764683 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_020210 exon7 c.A680G p.K227R CCACCAAGACCGA 95 4 0.04 140 0 0 6 0 0.00 . 0 broad.mit.edu 37 15 102312095 102312095 + RNA SNP G G T rs7179553 bycluster;by2hit2allele TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . GGATCCGAGTGCA 12 3 0.25 14 0 0 0 0 PAQR4 124222 mdanderson.org 37 16 3021898 3021898 + Silent SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c PAQR4,bladder,carcinoma,0,1 PAQR4 NM_152341 exon3 c.C771T p.G257G CGCCGGCGTCGTG 35 3 0.09 23 0 0 0 1 21 0 0.00 GLG1 2734 ucsc.edu 37 16 74566050 74566050 + Missense_Mutation SNP G G A rs201232267 TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . GLG1 NM_001145667 exon2 c.C440T p.P147L TTTTCAGGCTAGA 321 50 0.16 214 7 0.0327102804 106 0 0 MC1R 4157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 89985992 89985992 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002386 exon1 c.G326A p.R109Q TGGCCCGGGCTGC 51 10 0.20 58 0 0 5 2 0.40 DBNDD1 79007 mdanderson.org 37 16 90075813 90075813 + Silent SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c DBNDD1,rectum,carcinoma,-2,1 DBNDD1 NM_024043 exon2 c.G117A p.P39P AGCCTGCGGCACC 22 3 0.14 43 0 0 -2 1 8 0 0.00 PEMT 10400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 17480330 17480330 + Silent SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001267552 exon2 c.C108T p.C36C CATAACGCAGAAG 52 16 0.31 52 0 0 81 41 0.51 SLC47A2 146802 mdanderson.org 37 17 19610016 19610016 + Missense_Mutation SNP G G T rs199838072 alternate_allele TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_152908 exon9 c.C894A p.S298R GAGCATGCTGGGG 36 3 0.08 40 0 0 0 0 SLC47A2 146802 mdanderson.org 37 17 19618516 19618516 + Silent SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001099646 exon2 c.G138A p.V46V AGTCAGCACCTGG 25 3 0.12 21 0 0 0 0 ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29164229 29164229 + Missense_Mutation SNP A A C novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_024857 exon3 c.A1973C p.K658T GAATGAAATTCAC 435 90 0.21 248 0 0 0 0 KRTAP4-8 728224 hgsc.bcm.edu;mdanderson.org 37 17 39254149 39254149 + Missense_Mutation SNP G G C rs201246375 TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_031960 exon1 c.C188G p.T63S CAGCAGGTGGGCT 18 4 0.22 18 0 0 0 0 KRTAP4-6 81871 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 39296134 39296134 + Silent SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . KRTAP4-6 NM_030976 exon1 c.C606T p.S202S GCAAGAGGAGGCA 249 90 0.36 206 1 0.0048543689 46 0 0 LRRC46 90506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 45914165 45914165 + Silent SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_033413 exon8 c.G645A p.R215R GCACCGGCAACAG 80 24 0.30 67 0 0 4 2 0.50 TNRC6C 57690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 76075489 76075489 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_018996 exon11 c.A3224G p.N1075S GTGGCAATCTGGG 94 24 0.26 70 0 0 0 0 RNF213 57674 mdanderson.org 37 17 78360657 78360657 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001256071 exon63 c.G14888T p.R4963L TCAGCCGCTTCCT 40 3 0.08 56 0 0 24 0 0.00 ABCA7 10347 mdanderson.org 37 19 1062286 1062286 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c ABCA7,NS,carcinoma,0,1 ABCA7 NM_019112 exon42 c.G5686T p.G1896C CTGCGCGGTGTCC 29 3 0.10 31 0 0 0 1 46 0 0.00 ICAM3 3385 mdanderson.org 37 19 10450225 10450225 + Silent SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002162 exon1 c.G66A p.L22L GGTCAGCAGACAG 38 3 0.08 42 0 0 16 0 0.00 TYK2 7297 bcgsc.ca 37 19 10464862 10464862 + Missense_Mutation SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . TYK2 NM_003331 exon20 c.G2764A p.G922S CAGTGCCGTCGTT 58 4 0.07 58 0 0 126 56 0 0.00 NUDT19 390916 broad.mit.edu;mdanderson.org 37 19 33183483 33183483 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . NUDT19 NM_001105570 exon1 c.G617T p.R206L TCTTGCGGGGCAC 52 3 0.06 49 0 0 15 0 0 TEAD2 8463 mdanderson.org 37 19 49844664 49844664 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001256661 exon13 c.C1273A p.L425M AGAGCAGCAGTTC 41 3 0.07 38 0 0 103 0 0.00 FBXO41 150726 mdanderson.org 37 2 73493769 73493769 + Missense_Mutation SNP G G T rs369432452 alternate_allele TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c FBXO41_ENST00000521871,colon,carcinoma,0,1 FBXO41_ENST00000521871 NM_001080410 exon2 c.C947A p.A316E TCCCGCGCCGCCG 32 3 0.09 25 0 0 0 1 0 0 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152381766 152381766 + Missense_Mutation SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001271208 exon152 c.G22288A p.V7430I CCTTGACAAACTT 109 28 0.26 112 0 0 1 0 0.00 B3GNT7 93010 mdanderson.org 37 2 232263436 232263436 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_145236 exon2 c.G1006T p.V336L CTGGAGGTGCTGG 41 3 0.07 56 0 0 2 0 0.00 YTHDF1 54915 hgsc.bcm.edu 37 20 61833918 61833918 + Silent SNP G G A rs368566767 TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_017798 exon4 c.C1374T p.Y458Y GGTGCCGTAGTCC 90 4 0.04 84 0 0 44 0 0.00 BAGE 85319 broad.mit.edu 37 21 11087107 11087108 + RNA INS - - A rs55727275 bycluster TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . CCATCTCAAAAAA 7 3 0.43 7 0 0 0 0 MIR5009 0 broad.mit.edu 37 21 28793479 28793480 + RNA INS - - T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . ATGCATATTTTTT 5 1 0.20 10 0 0 0 0 LRRC3 81543 mdanderson.org 37 21 45876718 45876718 + Missense_Mutation SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_030891 exon2 c.C191T p.A64V TCCCGGCCAACAC 46 3 0.07 44 0 0 5 0 0.00 RFPL2 10739 bcgsc.ca 37 22 32589088 32589088 + Silent SNP G G A rs77728135 bycluster TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . RFPL2 NM_001098527 exon4 c.C357T p.A119A GCAGACGGCGCAT 213 9 0.04 161 2 0.0124223602 81 18 0 0.00 CACNA1I 8911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 40055123 40055123 + Splice_Site SNP T T G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_021096 exon12 c.2330+2T>G . TTCAGGTGAGCCT 53 6 0.11 51 0 0 0 0 ITGA9 3680 mdanderson.org 37 3 37550050 37550050 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002207 exon8 c.G829T p.V277F CCATAGGTTTATA 43 3 0.07 38 0 0 0 0 TMEM108 66000 broad.mit.edu 37 3 133099916 133099916 + Missense_Mutation SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . TMEM108 NM_023943 exon4 c.A1361G p.D454G AGGGGGACAAACC 212 5 0.02 164 1 0.006097561 67 0 0 FAM194A 131831 broad.mit.edu 37 3 150421540 150421540 + Missense_Mutation SNP T T A rs373770678 TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . FAM194A NM_152394 exon1 c.A146T p.E49V TCCTCCTCCACCT 131 6 0.05 104 1 0.0096153846 91 0 0 . 0 bcgsc.ca 37 4 8983308 8983308 + RNA SNP C C G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . CCTGCTCATCATC 34 7 0.21 22 0 0 0 0 . 0 bcgsc.ca 37 4 8983310 8983310 + RNA SNP T T G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . TGCTCATCATCCT 33 6 0.18 23 0 0 0 0 ATP8A1 10396 hgsc.bcm.edu 37 4 42524317 42524317 + Splice_Site SNP C C A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001105529 exon22 c.1763-1G>T . TTAACCCTGAAAA 65 5 0.08 71 0 0 0 0 SETD7 80854 mdanderson.org 37 4 140432921 140432921 + Missense_Mutation SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_030648 exon8 c.G997A p.V333I AGGCAACGGTGAG 47 3 0.06 54 0 0 1 0 0.00 SETD7 80854 mdanderson.org 37 4 140432973 140432973 + Silent SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_030648 exon8 c.C945A p.P315P TTTGATGGGCCCA 42 3 0.07 40 0 0 0 0 FAT2 2196 mdanderson.org 37 5 150923405 150923405 + Missense_Mutation SNP A A T rs6892335 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001447 exon9 c.T7283A p.F2428Y TTAATGAAGAAGT 63 2 0.03 67 0 0 0 0 FOXF2 2295 broad.mit.edu 37 6 1390978 1390980 + In_Frame_Del DEL CAC CAC - rs368362837 TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 CAC CAC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . FOXF2 NM_001452 exon1 c.796_798del p.266_266del CACCCTCACCACC 6 2 0.33 8 0 0 28 0 0 GPANK1 7918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31631709 31631709 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001199238 exon3 c.C547T p.L183F CAGCGAGCTGAGC 54 25 0.46 71 0 0 90 39 0.43 CSNK2B 1460 mdanderson.org 37 6 31635645 31635645 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001320 exon3 c.G73T p.V25L TGACAGGTGGATG 44 3 0.07 58 0 0 366 0 0.00 UTRN 7402 broad.mit.edu;mdanderson.org 37 6 144869950 144869950 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . UTRN NM_007124 exon46 c.G6770T p.G2257V CTGTTGGGGATGT 58 4 0.07 92 0 0 327 0 0 TNRC18 84629 mdanderson.org 37 7 5427362 5427362 + Missense_Mutation SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001080495 exon5 c.G2093A p.G698D AGCCGGCCACTGC 26 3 0.12 32 0 0 16 0 0.00 ITGB8 3696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 20406739 20406739 + Silent SNP T T G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002214 exon3 c.T318G p.V106V GCATGTTATAATA 119 29 0.24 77 0 0 5 2 0.40 SKAP2 8935 broad.mit.edu 37 7 26766623 26766626 + Splice_Site DEL TGTC TGTC - novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 TGTC TGTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c SKAP2,caecum,carcinoma,+1,1 SKAP2 NM_003930 exon7 c.470_472del p.157_158del GTTGTTTGTCTGT 103 7 0.07 36 0 0 40 1 0 0 . 0 broad.mit.edu 37 7 38284886 38284887 + RNA DEL GT GT - novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 GT GT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . . . . . GTCAAGGTGTGTG 6 2 0.33 4 0 0 0 0 PPIA 5478 mdanderson.org 37 7 44839373 44839373 + Missense_Mutation SNP T T A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_021130 exon4 c.T262A p.F88I GAGAACTTCATCC 21 3 0.14 15 0 0 5067 2 0.00 POR 5447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 75615073 75615073 + Missense_Mutation SNP C C G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_000941 exon13 c.C1575G p.F525L GCCCTTCAAGGCC 86 14 0.16 82 0 0 133 32 0.24 PCLO 27445 broad.mit.edu 37 7 82784471 82784471 + Missense_Mutation SNP A A G rs199515717 bycluster TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c Q9Y6V0-3,NS,carcinoma,0,15 PCLO NM_014510 exon2 c.T1486C p.S496P TTGCTGAGCCAGG 60 4 0.07 40 0 0 1506 15 0 0 PUS7 54517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 105105799 105105799 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c PUS7,NS,carcinoma,+2,2 PUS7 NM_019042 exon13 c.C1588T p.P530S GCAAGGGCATTAC 87 17 0.20 61 0 0 2 2 7 4 0.57 CDHR3 222256 broad.mit.edu 37 7 105641932 105641932 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . CDHR3 NM_152750 exon7 c.G738T p.L246L AGTCCTGGAGGAA 244 5 0.02 200 0 0 153 0 0 CPA2 1358 hgsc.bcm.edu;broad.mit.edu 37 7 129919488 129919488 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_001869 exon9 c.G973A p.D325N TTAGATGACTTTG 150 6 0.04 115 0 0 3 0 0.00 MLL3 58508 broad.mit.edu 37 7 151921174 151921174 + Silent SNP G G A rs1910986 TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c MLL3_ENST00000355193,NS,carcinoma,0,2 MLL3 NM_170606 exon20 c.C3249T p.S1083S AGATAAGCTTGCA 226 6 0.03 164 0 0 1564 2 1 0 0.00 PABPC1 26986 hgsc.bcm.edu 37 8 101721953 101721953 + Missense_Mutation SNP T T A rs370158190 alternate_allele TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c PABPC1,NS,carcinoma,+2,1 PABPC1 NM_002568 exon8 c.A979T p.M327L CCTCCATCATAAC 74 6 0.08 64 1 0.015625 2 1 289 0 0.00 MLLT3 4300 broad.mit.edu 37 9 20414374 20414376 + In_Frame_Del DEL CTA CTA - novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 CTA CTA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c MLLT3,NS,carcinoma,+1,4 MLLT3 NM_004529 exon5 c.468_470del p.156_157del CTGCTGCTACTGC 24 9 0.38 32 0 0 125 4 0 0 GAS1 2619 mdanderson.org 37 9 89561103 89561103 + Missense_Mutation SNP G G A novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_002048 exon1 c.C592T p.R198C TGCAGCGCAGCCC 29 3 0.10 16 0 0 0 0 RBM10 8241 broad.mit.edu;mdanderson.org 37 X 47030579 47030579 + Missense_Mutation SNP G G T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . RBM10 NM_001204468 exon4 c.G549T p.E183D GGAGGAGGAGGAT 56 4 0.07 63 0 0 117 1 0 0.00 RPS6KA6 27330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 83361424 83361424 + Silent SNP A A G novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_014496 exon15 c.T1314C p.S438S GCAAACAGAGTAG 118 54 0.46 97 0 0 0 0 PDZD4 57595 mdanderson.org 37 X 153071022 153071022 + Missense_Mutation SNP C C T novel TCGA-2G-AALF-01A-11D-A42Y-10 TCGA-2G-AALF-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89e5fae9-a016-48cc-9110-92269f6ad3c1 e8b2c448-8d20-49cb-9252-ce55a9ffde6c . . NM_032512 exon6 c.G589A p.A197T GGATGGCCACCGC 35 3 0.09 28 0 0 0 0