Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ESPNP 0 broad.mit.edu 37 1 17030903 17030905 + RNA DEL GAG GAG - rs55663095 alternate_allele TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . ATCGACGAGGAGG 9 5 0.56 7 0 0 0 0 ALDH4A1 8659 mdanderson.org 37 1 19216533 19216533 + Silent SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_003748 exon2 c.C129A p.G43G AGGGCTGCCCTGC 31 3 0.10 34 0 0 1 0 0.00 HMGCL 3155 broad.mit.edu 37 1 24151935 24151935 + Translation_Start_Site SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . HMGCL . . . . AGTCCAGCTGGGC 51 3 0.06 84 0 0 22 0 0 MACF1 23499 broad.mit.edu 37 1 39783026 39783026 + Silent SNP A A G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . MACF1 NM_012090 exon30 c.A3744G p.K1248K GGAAAAAGGCTCC 114 3 0.03 120 0 0 909 0 0 OVGP1 5016 bcgsc.ca 37 1 111957533 111957533 + Silent SNP C C T rs112145355 bycluster TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . OVGP1 NM_002557 exon11 c.G1590A p.Q530Q CACAGACTGATGA 147 29 0.20 120 1 0.0083333333 177 3 0 0.00 OVGP1 5016 bcgsc.ca 37 1 111957556 111957556 + Missense_Mutation SNP T T C rs140282461 TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . OVGP1 NM_002557 exon11 c.A1567G p.T523A TCAGGGTCTTTTC 131 10 0.08 126 0 0 177 6 0 0.00 . 728841 broad.mit.edu 37 1 144220807 144220807 + Missense_Mutation SNP A A C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 ENSG00000162825_ENST00000369365,NS,carcinoma,0,4 . . . . . TGCTGGATGAGAA 102 10 0.10 80 1 0.0125 4 2 1 0.50 DENND4B 9909 broad.mit.edu 37 1 153914771 153914771 + Silent SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . DENND4B NM_014856 exon5 c.C702A p.P234P GAAGACGGGCACT 61 3 0.05 62 0 0 210 2 0 0.00 RGL1 23179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 183816714 183816714 + Silent SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_015149 exon4 c.G258A p.Q86Q GGACCAGCTGCCT 95 21 0.22 88 0 0 0 0 CSGALNACT2 55454 broad.mit.edu 37 10 43659419 43659419 + Missense_Mutation SNP G G T rs79064394 bycluster TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 CSGALNACT2,NS,carcinoma,0,5 CSGALNACT2 NM_018590 exon5 c.G1086T p.L362F GGTCTTGATGTTT 135 5 0.04 151 1 0.0066225166 67 5 7 0 0.00 PGBD3 0 broad.mit.edu 37 10 50724864 50724864 + Silent SNP A A G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . PGBD3 NM_170753 exon2 c.G297C p.M99I TGGTGGAGGTTGC 137 4 0.03 150 0 0 58 1 0 0.00 RRP12 23223 mdanderson.org 37 10 99133414 99133414 + Silent SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_015179 exon17 c.C1944A p.G648G GGCCATGCCCAGC 50 3 0.06 66 1 0.0151515152 10 0 0.00 MUC2 4583 hgsc.bcm.edu 37 11 1093462 1093462 + Missense_Mutation SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 MUC2_ENST00000441003,NS,carcinoma,0,2 MUC2_ENST00000441003 NM_002457 exon30 c.G5281A p.G1761S CCCACCGGCACAC 44 2 0.05 36 0 0 0 2 0 0 PRMT3 10196 mdanderson.org 37 11 20409297 20409297 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_001145166 exon1 c.G5T p.C2F CCATGTGCTCGTT 37 3 0.08 31 0 0 2 0 0.00 ATN1 1822 broad.mit.edu 37 12 7045069 7045069 + Silent SNP T T C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . ATN1 NM_001007026 exon5 c.T639C p.P213P GGCCCCTCCCCCT 260 15 0.06 125 4 0.032 95 85 1 0.01 NANOG 79923 broad.mit.edu 37 12 7947381 7947382 + Frame_Shift_Del DEL AT AT - novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 AT AT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . NANOG NM_024865 exon4 c.608_609del p.203_203del GGAACAATTCAAC 732 17 0.02 279 0 0 30 0 0 NANOG 79923 broad.mit.edu 37 12 7947386 7947387 + Frame_Shift_Ins INS - - GT novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . NANOG NM_024865 exon4 c.613_614insGT p.T205fs AATTCAACCTGGA 674 17 0.03 265 0 0 30 0 0 RNF6 6049 mdanderson.org 37 13 26793723 26793723 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_183043 exon3 c.C64A p.H22N CATGATGATTATG 124 5 0.04 113 0 0 0 0 C14orf183 0 broad.mit.edu 37 14 50550133 50550134 + RNA INS - - TCTG rs145296357 bycluster;by1000genomes TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . C14orf183 . . . . ATCTCTCTCTGTC 9 4 0.44 5 0 0 9 0 0 SERPINA1 5265 broad.mit.edu 37 14 94849140 94849140 + Missense_Mutation SNP G G T rs11558263 byhapmap TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . SERPINA1 NM_001127701 exon4 c.C435A p.S145R GCCCTCGCTGAGG 140 5 0.04 128 1 0.0078125 51 1314 0 0.00 SLC25A29 123096 mdanderson.org 37 14 100758776 100758776 + Silent SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_001039355 exon4 c.G756A p.A252A CGTGGACGCCAGC 24 3 0.13 25 0 0 9 0 0.00 HERC2P2 0 broad.mit.edu 37 15 23312380 23312380 + RNA DEL T T - novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . ATTTTCTTTTTTT 10 2 0.20 11 0 0 0 0 TICRR 90381 broad.mit.edu 37 15 90168410 90168410 + Silent SNP A A C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 C15orf42,NS,carcinoma,0,1 . NM_152259 exon20 c.A4869C p.S1623S TGTGTCACCCCCC 43 10 0.23 44 6 0.1363636364 1 8 0 0.00 MESP2 145873 hgsc.bcm.edu 37 15 90320132 90320132 + Missense_Mutation SNP C C G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 MESP2,NS,carcinoma,-2,1 MESP2 NM_001039958 exon1 c.C544G p.Q182E CAGGGGCAAGGGC 16 2 0.13 23 0 0 -2 1 0 0 RHBDF1 64285 mdanderson.org 37 16 113155 113155 + Missense_Mutation SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_022450 exon5 c.G488A p.R163H AAGGCACGGCCAC 51 3 0.06 67 0 0 7 0 0.00 TRAF7 84231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2221328 2221328 + Missense_Mutation SNP T T C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_032271 exon6 c.T412C p.F138L AGCGTCTTCAAAG 67 15 0.22 52 0 0 49 9 0.18 LOC100132247 100132247 broad.mit.edu 37 16 22545906 22545906 + Silent SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 RP11-368J21.2_ENST00000424340,NS,carcinoma,0,2 . NM_001135865 exon7 c.C1602T p.A534A ACCTGCCGAGCGT 59 6 0.10 51 1 0.0196078431 2 70 0 0.00 PRSS36 146547 mdanderson.org 37 16 31154162 31154162 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_001258290 exon9 c.C1253A p.T418K ACGGGCGTGCGCA 36 3 0.08 31 0 0 0 0 COG4 25839 hgsc.bcm.edu;mdanderson.org 37 16 70530257 70530257 + Missense_Mutation SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_015386 exon12 c.C1559T p.A520V TTCACGGCACTTG 140 6 0.04 102 0 0 113 0 0.00 SYCE1L 100130958 broad.mit.edu 37 16 77233353 77233354 + Frame_Shift_Ins INS - - G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . SYCE1L NM_001129979 exon1 c.5_6insG p.A2fs AAATGGCGGGGAA 199 7 0.04 193 0 0 10 30 0 0.00 TAF1C 9013 mdanderson.org 37 16 84213858 84213858 + Silent SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_005679 exon12 c.G1479A p.L493L AGGCAGCAGTCGG 15 3 0.20 17 0 0 52 0 0.00 PRPF8 10594 mdanderson.org 37 17 1576479 1576479 + Missense_Mutation SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_006445 exon24 c.C3670T p.R1224C CTGTGCGCTCCTT 85 4 0.05 97 0 0 9 0 0.00 ITGAE 3682 broad.mit.edu 37 17 3660286 3660286 + Missense_Mutation SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . ITGAE NM_002208 exon10 c.G1163A p.S388N TCCATGCTGATGA 104 4 0.04 85 0 0 96 0 0 CAMTA2 23125 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 4883462 4883462 + Missense_Mutation SNP C C G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . CAMTA2 NM_001171167 exon9 c.G1224C p.Q408H GCCCCTCTGGGGG 175 6 0.03 213 1 0.0046948357 93 4 0 0.00 C17orf61-PLSCR3 0 hgsc.bcm.edu 37 17 7307176 7307176 + RNA SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . TGGACCCAGCTGG 83 17 0.20 86 0 0 0 0 CPD 1362 broad.mit.edu 37 17 28758789 28758789 + Splice_Site SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . CPD NM_001304 exon8 c.2018-1G>T . CTTATAGGTTCTT 129 5 0.04 96 0 0 89 0 0 CBX1 10951 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 17 46154242 46154242 + Nonsense_Mutation SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_006807 exon2 c.G125A p.W42X CCCTTCCACTTTA 206 18 0.09 183 0 0 25 0 0.00 PHOSPHO1 162466 mdanderson.org 37 17 47301803 47301803 + Silent SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_001143804 exon3 c.C684T p.D228D GGCGCCGTCGCCC 43 3 0.07 31 0 0 0 0 BZRAP1 9256 hgsc.bcm.edu 37 17 56386622 56386622 + Silent SNP T T C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_004758 exon22 c.A4011G p.E1337E TTCCTCTTCCTCC 79 8 0.10 80 0 0 8 1 0.13 EVPL 2125 broad.mit.edu;mdanderson.org 37 17 74008164 74008164 + Missense_Mutation SNP T T G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . EVPL NM_001988 exon19 c.A2380C p.T794P CCTGCGTCAGCCT 56 3 0.05 52 0 0 155 8 1 0.13 KISS1R 84634 mdanderson.org 37 19 920547 920547 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_032551 exon5 c.G996T p.Q332H CCGACAGGCCTTC 13 3 0.23 22 0 0 1 0 0.00 MATK 4145 mdanderson.org 37 19 3784375 3784375 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_002378 exon4 c.C210A p.F70L CTTGCGGAAGGCC 36 3 0.08 31 0 0 3 0 0.00 ICAM3 3385 mdanderson.org 37 19 10445899 10445899 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_002162 exon4 c.C780A p.D260E CATCTGGTCCCCC 49 3 0.06 70 0 0 36 0 0.00 SMARCA4 6597 mdanderson.org 37 19 11129657 11129657 + Missense_Mutation SNP G G T rs375459615 alternate_allele TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 SMARCA4,NS,lymphoid_neoplasm,+2,3 SMARCA4 NM_003072 exon17 c.G2463T p.E821D GTACGAGTTTGAC 126 5 0.04 159 0 0 2 3 32 0 0.00 MAN2B1 4125 mdanderson.org 37 19 12776540 12776540 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_000528 exon2 c.C239A p.T80N TCCACGGTTTTGA 52 3 0.06 58 0 0 32 0 0.00 ZNF676 163223 ucsc.edu 37 19 22363307 22363307 + Silent SNP T T C rs112075209 bycluster TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . ZNF676 NM_001001411 exon3 c.A1212G p.S404S TGAGGATGAGTTG 48 9 0.19 61 2 0.0327868852 146 0 0 CIC 23152 mdanderson.org 37 19 42791528 42791528 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_015125 exon4 c.G509T p.R170L AACGTCGGACCCA 51 3 0.06 49 0 0 8 0 0.00 TMC4 147798 mdanderson.org 37 19 54675697 54675697 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_001145303 exon2 c.C253A p.Q85K GGTCCTGCAGCTC 47 4 0.09 76 0 0 62 1 0.02 ZNF628 89887 ucsc.edu 37 19 55994302 55994302 + Missense_Mutation SNP T T C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . ZNF628 NM_033113 exon3 c.T1742C p.L581P CCAACCTGCGGCA 34 4 0.12 27 0 0 75 8 0 0.00 ZNF814 730051 bcgsc.ca 37 19 58385788 58385788 + Missense_Mutation SNP A A G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . ZNF814 NM_001144989 exon3 c.T970C p.Y324H ATTCATAAGGTCT 113 7 0.06 109 0 0 93 0 0 ADCY3 109 mdanderson.org 37 2 25050963 25050963 + Missense_Mutation SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_004036 exon13 c.G2240A p.C747Y TCCAGGCAGCTGC 101 5 0.05 80 0 0 17 0 0.00 RNF103 7844 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 86849821 86849821 + Silent SNP G G C rs139047742 TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_005667 exon1 c.C189G p.P63P CTTCTCGGGCAAC 287 24 0.08 217 0 0 0 4 0 0.00 RGPD8 727851 broad.mit.edu 37 2 113147636 113147636 + Frame_Shift_Del DEL A A - novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . RGPD8 NM_001164463 exon20 c.2886delT p.F962fs TTGGCCAAAAATC 1798 10 0.01 1573 0 0 81 1 0 0.00 XRN2 22803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 21319698 21319698 + Missense_Mutation SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_012255 exon14 c.G1250A p.R417Q GAAGACGACAGAA 60 16 0.27 54 0 0 24 5 0.21 NCOR1P1 0 broad.mit.edu 37 20 26094406 26094407 + RNA INS - - C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . CTTGCCATTTAAA 6 2 0.33 5 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29628225 29628225 + Splice_Site SNP A A G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . FRG1B NR_003579 exon5 c.529-2A>G . TCACTTAGGGGAA 429 20 0.05 506 11 0.0217391304 181 1 0 0.00 TOP3B 8940 mdanderson.org 37 22 22326986 22326986 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_003935 exon4 c.C307A p.Q103K GCACCTGCAGGAA 48 3 0.06 92 0 0 10 0 0.00 TTC28 23331 mdanderson.org 37 22 28388647 28388647 + Silent SNP C C T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_001145418 exon19 c.G5481A p.L1827L ATTGGGCAGACCT 52 3 0.06 59 0 0 0 0 DYNC1LI1 51143 broad.mit.edu 37 3 32582556 32582556 + Silent SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . DYNC1LI1 NM_016141 exon5 c.C711A p.G237G TGGAATGCCCAAG 134 4 0.03 136 0 0 23 30 1 0.03 FAM212A 389119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49841691 49841691 + Silent SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_203370 exon2 c.G135A p.Q45Q TGTGCAGCCCAGC 57 14 0.25 67 0 0 53 14 0.26 ADAMTS9 56999 broad.mit.edu 37 3 64527581 64527581 + Missense_Mutation SNP T T G novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . ADAMTS9 NM_182920 exon33 c.A5130C p.Q1710H GCTGGGTTGGTCC 169 33 0.20 185 23 0.1243243243 206 4 0 0.00 JAKMIP1 152789 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 6107587 6107589 + In_Frame_Del DEL CTC CTC - novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 CTC CTC Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . JAKMIP1 NM_144720 exon3 c.236_238del p.79_80del GGTCTTCTCCTCA 54 12 0.22 72 0 0 250 1 0 0.00 RXRB 6257 mdanderson.org 37 6 33168217 33168217 + Missense_Mutation SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_021976 exon1 c.C37T p.R13W CATGCCGCTGAGG 38 3 0.08 18 0 0 9 0 0.00 CRIP3 401262 mdanderson.org 37 6 43274254 43274254 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_206922 exon5 c.C330A p.S110R GGGAGGGCCTTTA 117 5 0.04 120 0 0 0 0 MMS22L 253714 mdanderson.org 37 6 97729152 97729152 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_198468 exon3 c.C251A p.A84E ACTAATGCTGTTT 42 3 0.07 43 0 0 2 0 0.00 TFR2 7036 mdanderson.org 37 7 100238346 100238346 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 TFR2,NS,carcinoma,+2,1 TFR2 NM_003227 exon3 c.C436A p.Q146K GGAACTGCAGGAA 48 3 0.06 45 0 0 2 1 0 0 KCP 375616 broad.mit.edu 37 7 128548304 128548305 + RNA INS - - A rs10565205 bycluster;by1000genomes TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . KCP . . . . AAGAAAGAAGAAA 7 4 0.57 4 0 0 16 0 0 . 389626 bcgsc.ca 37 8 11786991 11786991 + RNA SNP T T C rs79082977 bycluster TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . GATCCTTTGAGAG 30 5 0.17 36 1 0.0277777778 0 0 PXDNL 137902 broad.mit.edu 37 8 52232504 52232504 + Missense_Mutation SNP A A T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 PXDNL_ENST00000356297,larynx,carcinoma,+1,1 PXDNL NM_144651 exon23 c.T4339A p.C1447S CTGGACAGCAGGT 191 4 0.02 140 0 0 414 1 3 0 0.00 SLC39A4 55630 mdanderson.org 37 8 145641504 145641504 + Missense_Mutation SNP G G A rs201917734 bycluster TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_017767 exon1 c.C89T p.A30V AGGGGCGCTGGGC 23 2 0.09 17 0 0 6 0 0.00 MLLT3 4300 mdanderson.org 37 9 20414370 20414370 + Silent SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_004529 exon5 c.C474T p.S158S GCTGCTGCTGCTA 33 3 0.09 30 0 0 2 0 0.00 TLN1 7094 mdanderson.org 37 9 35711280 35711280 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_006289 exon30 c.C3991A p.L1331I TCTTGAGGTTAGG 53 3 0.06 71 0 0 18 0 0.00 PTCH1 5727 broad.mit.edu;bcgsc.ca 37 9 98209504 98209524 + In_Frame_Del DEL CGGGCCCCGCGAGGGCCCCAG CGGGCCCCGCGAGGGCCCCAG - novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 CGGGCCCCGCGAGGGCCCCAG CGGGCCCCGCGAGGGCCCCAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . PTCH1 NM_000264 exon23 c.4014_4034del p.1338_1345del TGAGAACGGGCCC 58 14 0.24 72 0 0 1850 8 0 0.00 GOLGA2 2801 hgsc.bcm.edu;bcgsc.ca 37 9 131020818 131020818 + Missense_Mutation SNP A A C rs199744363 TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_004486 exon21 c.T2124G p.D708E CTCCTCATCCTCC 22 4 0.18 41 0 0 0 0 SPTAN1 6709 mdanderson.org 37 9 131344818 131344818 + Missense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_003127 exon13 c.G1633T p.A545S GATGTGGCCACTC 40 3 0.08 59 0 0 4 0 0.00 ENTPD2 954 mdanderson.org 37 9 139943484 139943484 + Missense_Mutation SNP T T C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_203468 exon8 c.A1193G p.Y398C GCGCAGTAGTCGG 9 1 0.11 17 0 0 21 0 0.00 ANAPC2 29882 mdanderson.org 37 9 140069899 140069899 + Silent SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_013366 exon12 c.C2046T p.S682S CGCCTTGCTCAGT 36 3 0.08 37 0 0 123 0 0.00 NELFB 25920 mdanderson.org 37 9 140151299 140151299 + Silent SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_015456 exon4 c.G390T p.L130L GAAGCTGGTTATG 48 3 0.06 65 0 0 76 0 0.00 PPP1R3F 89801 mdanderson.org 37 X 49142704 49142704 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . NM_033215 exon4 c.G1552T p.G518X ACAGATGGAGGGA 50 3 0.06 35 0 0 2 0 0.00 NXF4 55999 hgsc.bcm.edu 37 X 101819124 101819124 + RNA SNP G G C novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . TCTCCTGTCTCTC 123 6 0.05 104 0 0 0 0 . 84443 bcgsc.ca 37 X 106846480 106846480 + Silent SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . ACAACAGCAGCAG 176 11 0.06 125 0 0 0 0 SLC6A8 6535 broad.mit.edu 37 X 152960296 152960296 + Silent SNP G G A rs2314070 TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . SLC6A8 NM_005629 exon12 c.G1719A p.P573P CGTGCCGCTGCAC 57 3 0.05 46 0 0 34 43 4 0.09 TXNRD2 10587 mdanderson.org 37 22 19885586 19885586 + Silent SNP G G A novel TCGA-2G-AALG-01A-11D-A42Y-10 TCGA-2G-AALG-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f29b7c0c-30ed-4d15-9ee2-148852f3e573 6f3fee73-6a59-47ea-891c-e9946680a400 . . . . . . GGGGATGCTGCGC 47 3 0.06 54 0 0 45 0 0.00