Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV NBPF3 84224 broad.mit.edu 37 1 21807432 21807432 + Missense_Mutation SNP A A G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . NBPF3 NM_032264 exon12 c.C1391G p.P464R TGAAAAAGGACCA 258 4 0.02 239 0 0 55 1 0 0.00 GJA9 81025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39340498 39340498 + Missense_Mutation SNP T T C novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_030772 exon2 c.A1273G p.T425A CCCATGTAGCTCT 238 33 0.14 193 0 0 0 0 FUBP1 8880 broad.mit.edu 37 1 78430879 78430879 + Silent SNP T T C novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . FUBP1 NM_003902 exon8 c.A510G p.K170K TCTTCCTTTTTCA 101 3 0.03 102 0 0 112 76 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145109284 145109292 + RNA DEL AAAAAAAAA AAAAAAAAA - rs34197869 TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 AAAAAAAAA AAAAAAAAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . CGTCTCAAAAAAA 6 2 0.33 4 0 0 0 0 VPS72 6944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 151156791 151156791 + Splice_Site SNP A A T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_005997 exon5 c.562+2T>A . AGACTTACCCAGT 93 11 0.12 83 0 0 4 4 1.00 TTC24 164118 hgsc.bcm.edu;mdanderson.org 37 1 156551835 156551835 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001105669 exon2 c.G679T p.E227X CTTGCCGAGAGGA 69 4 0.06 49 0 0 0 0 . 0 broad.mit.edu 37 1 160905269 160905270 + RNA INS - - A rs56775134 bycluster TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . ACAAAACAAAAAA 6 2 0.33 7 0 0 0 0 MRPS14 63931 mdanderson.org 37 1 174983908 174983908 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_022100 exon3 c.C284A p.S95Y GGACGGGACGTCA 100 6 0.06 93 0 0 75 0 0.00 C10orf114 399726 mdanderson.org 37 10 21784579 21784579 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001010911 exon2 c.C361A p.Q121K AGTCCTGGATGAG 49 3 0.06 47 0 0 4 0 0.00 ZRANB1 54764 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 126673488 126673488 + Missense_Mutation SNP A A G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_017580 exon9 c.A2054G p.D685G GGCTTGACCGCTA 99 5 0.05 84 0 0 55 0 0.00 MUC2 4583 mdanderson.org 37 11 1093324 1093324 + Missense_Mutation SNP G G A rs201143282 TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 MUC2_ENST00000441003,uveal_tract,malignant_melanoma,0,2 MUC2_ENST00000441003 NM_002457 exon30 c.G5143A p.G1715S CCCACCGGCACAC 23 3 0.13 26 0 0 0 2 0 0 DNHD1 144132 mdanderson.org 37 11 6592605 6592605 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_144666 exon42 c.G13863T p.Q4621H CAGTCAGCTCCAG 36 3 0.08 41 0 0 7 0 0.00 C11orf58 10944 mdanderson.org 37 11 16760382 16760382 + Silent SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_014267 exon1 c.C57T p.D19D CCCAGACGACGAT 39 3 0.08 44 0 0 271 0 0.00 ABCC8 6833 mdanderson.org 37 11 17450161 17450161 + Missense_Mutation SNP G G A rs148709148 bycluster;byfrequency;by1000genomes TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_000352 exon13 c.C1874T p.A625V TGGGGGGCACACT 43 3 0.07 41 0 0 0.001 1 0 0.00 ZDHHC13 54503 mdanderson.org 37 11 19174229 19174229 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_019028 exon8 c.G871T p.E291X AAATGCGAGGTAT 46 3 0.07 71 0 0 19 0 0.00 FOLH1 2346 bcgsc.ca 37 11 49204790 49204790 + Silent SNP A A G rs76509850 bycluster;byfrequency TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . FOLH1 NM_004476 exon7 c.T831C p.Y277Y ATAAGCATATTCT 173 9 0.05 131 1 0.0076335878 141 0 0 KLC2 64837 broad.mit.edu;ucsc.edu 37 11 66033608 66033608 + Silent SNP C C A novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . KLC2 NM_022822 exon14 c.C1647A p.L549L GAAACTCCGGGAT 120 19 0.16 109 3 0.0275229358 50 43 13 0.30 ACY3 91703 mdanderson.org 37 11 67414472 67414472 + Missense_Mutation SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_080658 exon3 c.G43A p.A15T TCACAGCCACGCG 42 3 0.07 48 0 0 0 0 PIK3C2G 5288 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 18573943 18573943 + Missense_Mutation SNP T T C novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_004570 exon16 c.T2261C p.L754P AACTACTGGAATA 127 12 0.09 89 0 0 0 0 SP1 6667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53776737 53776737 + Missense_Mutation SNP A A C novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_138473 exon3 c.A1006C p.M336L AGCAACATGGGAA 132 17 0.13 106 0 0 11 1 0.09 TIMELESS 8914 mdanderson.org 37 12 56814371 56814371 + Silent SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_003920 exon26 c.G3210A p.R1070R AGGGGGCCGAACC 73 4 0.05 52 0 0 68 0 0.00 TIMELESS 8914 hgsc.bcm.edu;broad.mit.edu 37 12 56817448 56817448 + Silent SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 TIMELESS,NS,carcinoma,0,1 TIMELESS NM_003920 exon17 c.G2010A p.E670E CTCCTCCTCTTCT 90 4 0.04 45 1 0.0222222222 0 1 40 0 0.00 TCTN1 79600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 111052124 111052124 + Missense_Mutation SNP G G A novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_024549 exon1 c.G137A p.G46E CCTTCGGAACTTT 129 16 0.12 85 0 0 15 3 0.20 P2RX2 22953 mdanderson.org 37 12 133195575 133195575 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_170683 exon1 c.G173T p.W58L TCGTGTGGTGCGC 29 3 0.10 39 0 0 0 0 MYCBP2 23077 mdanderson.org 37 13 77900715 77900715 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_015057 exon1 c.C196A p.L66M GCAGCAGCTGGTA 35 3 0.09 43 0 0 0 0 PCCA 5095 mdanderson.org 37 13 100741384 100741384 + Missense_Mutation SNP T T G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001178004 exon1 c.T10G p.F4V GCGGGGTTCTGGG 86 19 0.22 79 8 0.1012658228 2 0 0.00 EFS 0 broad.mit.edu 37 14 23828820 23828820 + Silent SNP T T G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . EFS NM_005864 exon4 c.A867C p.P289P TGGGGGTGGGGGG 38 7 0.18 20 6 0.3 37 6 1 0.17 MYH7 4625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 23893198 23893198 + Missense_Mutation SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_000257 exon23 c.G2840A p.C947Y TCTGAGCACTCAT 81 12 0.15 101 0 0 0 0 HIF1A 3091 mdanderson.org 37 14 62207590 62207590 + Missense_Mutation SNP G G A rs199775054 by1000genomes;alternate_allele TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001243084 exon12 c.G1849A p.A617T GAAAGCGCAAGTC 137 5 0.04 129 0 0 129 0 0.00 MESP2 145873 broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 90319955 90319955 + Missense_Mutation SNP G G A novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . MESP2 NM_001039958 exon1 c.G367A p.E123K AAGATCGAGACGC 26 4 0.15 29 0 0 20 1 0 0.00 OR2C1 4993 mdanderson.org 37 16 3406387 3406387 + Silent SNP C C T rs1218763 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_012368 exon1 c.C447T p.C149C TGCCTGCCTGGGT 34 3 0.09 35 0 0 0 0 CES1 1066 mdanderson.org 37 16 55853459 55853459 + Silent SNP C C T rs114275306 bycluster;byfrequency;by1000genomes TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 CES1_ENST00000360526,colon,carcinoma,-1,1 CES1_ENST00000360526 NM_001025195 exon7 c.G894A p.T298T CAATGTCGTCTCC 39 3 0.08 26 0 0 0.001 -1 1 9 0 0.00 . 440348 broad.mit.edu 37 16 74425946 74425946 + Nonsense_Mutation SNP C C T rs369331764 TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 NPIPL2_ENST00000429990,NS,carcinoma,0,2 . . . . . AAAAAACAAAACA 43 6 0.14 39 1 0.0256410256 2 1 0 0.00 . 440348 broad.mit.edu;mdanderson.org 37 16 74425961 74425961 + Missense_Mutation SNP G G A rs374113246 TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . ACCCACGCTCCAA 32 4 0.13 32 2 0.0625 0 0 TRPV1 7442 mdanderson.org 37 17 3493259 3493259 + Missense_Mutation SNP C C T rs201089655 alternate_allele TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_080706 exon5 c.G886A p.A296T TGTCGGCCACCTC 51 3 0.06 42 0 0 3 0 0.00 SLC6A4 6532 broad.mit.edu 37 17 28548797 28548797 + Silent SNP C C T rs202193339 TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . SLC6A4 NM_001045 exon3 c.G180A p.R60R AGAGTGCCGTGTG 203 6 0.03 176 0 0 60 0 0 LRRC37B 114659 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 30374805 30374805 + Silent SNP A A G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_052888 exon9 c.A2268G p.P756P GAATCCAGAAGGA 82 10 0.12 66 0 0 15 3 0.20 C17orf64 124773 mdanderson.org 37 17 58506854 58506854 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_181707 exon5 c.G561T p.M187I CAACATGCAGACC 59 4 0.07 51 0 0 2 0 0.00 ZBTB7C 201501 hgsc.bcm.edu 37 18 45567151 45567151 + Missense_Mutation SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 ZBTB7C,NS,carcinoma,0,1 ZBTB7C NM_001039360 exon2 c.G328A p.A110T TGGCTGCGTTGAG 74 3 0.04 87 0 0 0 1 1 0 0.00 TPM4 7171 mdanderson.org 37 19 16198892 16198892 + Missense_Mutation SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 TPM4_ENST00000344824,colon,carcinoma,0,1 TPM4_ENST00000344824 NM_001145160 exon5 c.C548T p.A183V AGCGTGCGGAGGT 56 3 0.05 56 0 0 0 1 461 0 0.00 . 0 broad.mit.edu 37 19 20242238 20242238 + RNA DEL A A - novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . AAAAACAAAAAAA 6 2 0.33 4 0 0 2 0 0.00 DYRK1B 9149 mdanderson.org 37 19 40316581 40316581 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_004714 exon11 c.C1664A p.P555Q GAGGTTGGTGATG 21 2 0.10 26 0 0 25 0 0.00 SCAF1 58506 mdanderson.org 37 19 50156724 50156724 + Silent SNP G G A novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_021228 exon7 c.G3078A p.E1026E GGAGGAGGAAGAA 25 2 0.08 13 0 0 26 0 0.00 ZNF83 55769 bcgsc.ca 37 19 53116855 53116856 + Missense_Mutation DNP CT CT TA novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 CT CT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . ZNF83 NM_018300 exon3 c.A962T p.E321V GCCACACTCATTA 99 6 0.06 89 0 0 73 14 0 0.00 ZNF83 55769 bcgsc.ca 37 19 53116865 53116865 + Missense_Mutation SNP T T C rs141749555 TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . ZNF83 NM_018300 exon3 c.A953G p.K318R TTACATTTGTAAG 95 6 0.06 90 0 0 73 11 0 0.00 LOC100134259 0 bcgsc.ca 37 2 47083032 47083032 + RNA SNP G G A rs4953430 TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . ATATATGTATATA 33 10 0.30 35 0 0 0 0 OBSL1 23363 mdanderson.org 37 2 220430187 220430187 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001173431 exon6 c.C2184A p.F728L GGTTGTGAAGGTC 39 3 0.08 35 0 0 108 0 0.00 GPC1 2817 mdanderson.org 37 2 241401916 241401916 + Missense_Mutation SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_002081 exon3 c.C634T p.R212W CGCCTGCGGGCCA 23 2 0.09 15 0 0 31 0 0.00 UBASH3A 53347 mdanderson.org 37 21 43867289 43867289 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 UBASH3A,bladder,carcinoma,0,1 UBASH3A NM_018961 exon15 c.G1971T p.W657C GAACTGGATCTCA 23 2 0.09 26 0 0 0 1 18 0 0.00 DGCR8 54487 mdanderson.org 37 22 20073919 20073919 + Missense_Mutation SNP C C T rs118025402 bycluster;by1000genomes TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001190326 exon2 c.C433T p.R145W GACGTGCGGGCGG 51 3 0.06 37 0 0 0 21 0 0.00 DDX17 10521 broad.mit.edu;mdanderson.org 37 22 38881967 38881967 + Silent SNP A A G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . DDX17 NM_001098504 exon13 c.T2169C p.P723P AGGGGGAGGAGGA 52 3 0.06 62 1 0.0161290323 73 103 0 0.00 CHST2 9435 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 3 142840933 142840933 + Nonsense_Mutation SNP C C G rs140050898 bycluster;byfrequency;alternate_allele TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 CHST2,NS,carcinoma,0,1 CHST2 NM_004267 exon2 c.C1275G p.Y425X GCGGTACGAGGAC 89 4 0.04 72 0 0 0 1 166 1 0.01 FGFRL1 53834 broad.mit.edu 37 4 1017489 1017489 + Missense_Mutation SNP A A C novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . FGFRL1 NM_001004356 exon4 c.A413C p.D138A AAGAGGACCCCGC 72 20 0.28 58 12 0.2068965517 77 13 0 0.00 PTK7 5754 mdanderson.org 37 6 43126631 43126631 + Missense_Mutation SNP C C T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 PTK7,colon,carcinoma,0,4 PTK7 NM_001270398 exon18 c.C2822T p.A941V TGGCTGCGCGTAA 45 3 0.07 52 0 0 0 4 150 1 0.01 . 0 broad.mit.edu 37 6 71962414 71962416 + RNA DEL CAA CAA - rs11392424 alternate_allele TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 CAA CAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . AAAAGGCAAAAAA 7 2 0.29 8 0 0 0 0 ECT2L 345930 mdanderson.org 37 6 139210141 139210141 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001195037 exon19 c.G2387T p.C796F ATTGCTGTGATGA 49 3 0.06 48 0 0 0 0 LOC100652739 442267 bcgsc.ca 37 6 150202646 150202646 + RNA SNP C C T rs6908862 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . AGAATCCGATTGA 29 4 0.14 22 0 0 0 0 SYNE1 23345 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 6 152589280 152589280 + Silent SNP G G C novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_182961 exon100 c.C18726G p.A6242A CTGCTCGGCTAAT 111 6 0.05 88 0 0 1 0 0.00 TYW1B 441250 broad.mit.edu 37 7 72236860 72236860 + RNA DEL T T - novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . AAATGATTTTTTT 36 9 0.25 25 0 0 0 0 LRWD1 222229 mdanderson.org 37 7 102108606 102108606 + Missense_Mutation SNP G G A novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_152892 exon6 c.G776A p.S259N AGGGCAGCCCTGT 41 3 0.07 28 0 0 57 0 0.00 NRCAM 4897 bcgsc.ca;mdanderson.org 37 7 107815786 107815786 + Silent SNP A A G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . NRCAM NM_001037132 exon25 c.T3168C p.P1056P TACATCAGGTGGA 71 5 0.07 56 0 0 267 0 0 WASL 8976 mdanderson.org 37 7 123332847 123332847 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 WASL,bladder,carcinoma,0,1 WASL NM_003941 exon9 c.C901A p.P301T GAGGAGGAGGAGG 45 3 0.07 42 0 0 0 1 56 0 0.00 TOX 9760 broad.mit.edu 37 8 59728032 59728032 + Silent SNP A A G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . TOX NM_014729 exon7 c.T1257C p.P419P GAGGGGAGGAGGA 118 23 0.19 94 18 0.1914893617 83 19 1 0.05 STAU2 27067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 74464275 74464275 + Missense_Mutation SNP T T G novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001164380 exon13 c.A1502C p.E501A AAATATTCCAGTT 136 19 0.14 142 0 0 19 4 0.21 . 0 broad.mit.edu 37 8 137071034 137071035 + RNA INS - - C novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . ATATGGGCCCCCC 6 2 0.33 5 0 0 0 0 PLEC 5339 mdanderson.org 37 8 144993788 144993788 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_201380 exon32 c.C10612A p.P3538T GCACGGGGTCCAC 25 3 0.12 27 0 0 66 0 0.00 NOTCH1 4851 mdanderson.org 37 9 139405668 139405668 + Silent SNP G G A novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_017617 exon16 c.C2523T p.G841G CTCCCCGCCGTTT 52 3 0.06 55 0 0 16 0 0.00 ENTPD2 954 mdanderson.org 37 9 139943414 139943414 + Silent SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_203468 exon8 c.C1263A p.G421G CACGCCGCCGAAG 13 3 0.23 12 0 0 0 0 IQSEC2 23096 mdanderson.org 37 X 53279934 53279934 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001111125 exon5 c.C1824A p.D608E TGAGCGGTCACTC 46 3 0.07 29 0 0 5 0 0.00 FAM104B 90736 mdanderson.org 37 X 55172630 55172630 + Nonsense_Mutation SNP G G A rs113263757 bycluster TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_001166700 exon3 c.C238T p.Q80X AGAACTGGGGAAA 40 4 0.10 23 2 0.0869565217 34 1 0.03 AR 367 mdanderson.org 37 X 66766585 66766585 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . NM_000044 exon1 c.G1597T p.G533X TACTCCGGACCTT 52 3 0.06 38 0 0 0 0 PRKDC 5591 mdanderson.org 37 8 48711905 48711905 + Missense_Mutation SNP G G T novel TCGA-2G-AALS-01A-12D-A42Y-10 TCGA-2G-AALS-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34d1f451-0b1c-4caf-bd25-c4b7fc096820 120ca414-0a11-4d4b-8742-6e6b7532ab65 . . . . . . TGCACAGCCTCAG 44 3 0.07 28 0 0 56 0 0.00