Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV NPHP4 261734 mdanderson.org 37 1 5969244 5969244 + Missense_Mutation SNP C C T rs200462413 by1000genomes TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_015102 exon12 c.G1471A p.A491T GGGCAGCGAGAAC 44 3 0.07 41 0 0 0.001 3 0 0.00 GRIK3 2899 broad.mit.edu 37 1 37271834 37271834 + Missense_Mutation SNP C C A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . GRIK3 NM_000831 exon14 c.G2185T p.A729S TCAGGGCCCTCTG 121 4 0.03 115 0 0 195 0 0 PTPRF 5792 mdanderson.org 37 1 44057152 44057152 + Missense_Mutation SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_002840 exon9 c.C1459T p.R487C AGCCTGCGCGTGC 30 3 0.10 35 0 0 32 0 0.00 LRRC41 10489 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 46768994 46768994 + Missense_Mutation SNP T T A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_006369 exon1 c.A1T p.M1L CCGCCATCTTGGG 40 14 0.35 32 0 0 2 0 0.00 SLAMF8 56833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159799841 159799841 + Missense_Mutation SNP T T G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_020125 exon2 c.T226G p.F76V TCCCGCTTCCTGG 113 46 0.41 89 0 0 22 0 0.00 IL19 29949 hgsc.bcm.edu;mdanderson.org 37 1 207010078 207010078 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_153758 exon2 c.G185T p.G62V ACCACGGTCTCAG 88 4 0.05 84 0 0 0 0 FMN2 56776 broad.mit.edu 37 1 240371580 240371580 + Silent SNP A A T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c FMN2,NS,carcinoma,+2,1 FMN2 NM_020066 exon5 c.A3468T p.P1156P GCCCCCACTTCCC 76 7 0.09 65 3 0.0461538462 451 1 0 0 OR2L3 391192 hgsc.bcm.edu 37 1 248224864 248224864 + Missense_Mutation SNP A A G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c OR2L3,NS,carcinoma,+1,1 OR2L3 NM_001004687 exon1 c.A881G p.K294R GGAACAAGGAGGT 81 5 0.06 88 1 0.0113636364 1 1 0 0 SKIDA1 387640 mdanderson.org 37 10 21806056 21806056 + Silent SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_207371 exon4 c.C696T p.A232A AGCAGCGGCGGCG 14 3 0.21 17 0 0 0 0 ECD 11319 broad.mit.edu;mdanderson.org 37 10 74899094 74899094 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . ECD NM_001135752 exon12 c.C1493A p.S498X TGGGTTGAGACTT 66 5 0.08 67 0 0 50 39 0 0.00 IFIT5 24138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 91178125 91178125 + Missense_Mutation SNP G G C novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_012420 exon2 c.G1169C p.R390P TTCACCGTAAATC 115 43 0.37 157 0 0 25 10 0.40 LOXL4 84171 hgsc.bcm.edu;mdanderson.org 37 10 100017443 100017443 + Silent SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_032211 exon8 c.C1224A p.V408V GCACCTGACAGCA 66 4 0.06 55 0 0 12 0 0.00 TTC40 54777 broad.mit.edu 37 10 134755171 134755171 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . TTC40 NM_001200049 exon3 c.C230A p.A77E ATGGGCGCCTTCA 130 5 0.04 146 0 0 100 1 0 0.00 RPS6KA4 8986 mdanderson.org 37 11 64136051 64136051 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_003942 exon11 c.G1312T p.A438S GAGTTCGCAGTCA 25 3 0.12 33 0 0 29 0 0.00 CARD17 440068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 104971361 104971361 + Missense_Mutation SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c CARD17,bladder,carcinoma,0,1 CARD17 NM_001007232 exon2 c.G153A p.M51I CTTATCCATAACT 124 44 0.35 151 1 0.0066225166 0 1 0 0 MLL2 8085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 49444817 49444817 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_003482 exon10 c.C2649A p.F883L GGGAGGGAACAAG 170 43 0.25 135 0 0 3 0 0.00 KRT5 3852 bcgsc.ca 37 12 52912805 52912805 + Missense_Mutation SNP C C T rs3194286 by2hit2allele TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . KRT5 NM_000424 exon2 c.G695A p.S232N ACGATGCTGTCCA 237 30 0.13 192 14 0.0729166667 88 1 0 0.00 ATF7 11016 mdanderson.org 37 12 53918385 53918385 + Missense_Mutation SNP T T A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_006856 exon10 c.A1088T p.K363M TCGGCCTTCTTCT 59 3 0.05 69 0 0 15 0 0.00 OAS3 4940 mdanderson.org 37 12 113376380 113376380 + Silent SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_006187 exon1 c.G45T p.V15V GTTCGTGGCCAGA 36 3 0.08 27 0 0 18 0 0.00 RIMBP2 23504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 130919365 130919365 + Missense_Mutation SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_015347 exon11 c.G2116A p.E706K CCTCCTCGTCTGA 81 27 0.33 58 0 0 1 1 1.00 ATXN8OS 6315 hgsc.bcm.edu;ucsc.edu 37 13 70681838 70681838 + RNA SNP C C G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . GCTTTACGCACAG 30 9 0.30 23 0 0 0 0 BIVM-ERCC5 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 103520594 103520594 + Missense_Mutation SNP C C G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c ERCC5,NS,malignant_melanoma,0,1 ERCC5 NM_001204425 exon20 c.C4027G p.L1343V GAACCTCTCCTAA 157 74 0.47 226 2 0.0088495575 0 1 48 16 0.33 . 0 broad.mit.edu 37 14 20086381 20086382 + RNA INS - - T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . TACAAGGTAAAAA 15 4 0.27 10 0 0 0 0 . 0 broad.mit.edu 37 14 20146543 20146544 + RNA INS - - GTCCC novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . CTCAGCAGAACAG 8 7 0.88 4 0 0 0 0 IRF9 10379 mdanderson.org 37 14 24634055 24634055 + Silent SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_006084 exon7 c.C882T p.C294C CCTTTGCCCCATC 31 3 0.10 29 0 0 118 0 0.00 PKD1 5310 hgsc.bcm.edu 37 16 2164211 2164211 + Missense_Mutation SNP G G A rs74488735 TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c PKD1,NS,haematopoietic_neoplasm,0,4 PKD1 NM_000296 exon11 c.C2813T p.T938M CTGGGCGTGGCGC 51 6 0.12 28 0 0 0 4 19 2 0.11 E4F1 1877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2284682 2284682 + Silent SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_004424 exon11 c.G1692A p.R564R GGTGCGGCACGTG 168 40 0.24 104 0 0 36 7 0.19 MEFV 4210 mdanderson.org 37 16 3304520 3304520 + Missense_Mutation SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_000243 exon2 c.C548T p.P183L CCGCCCGGCAGGG 42 3 0.07 24 0 0 1 0 0.00 . 0 broad.mit.edu 37 16 32827440 32827440 + RNA DEL T T - novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . CTTAAATCCCTCT 6 2 0.33 4 0 0 7 0 0.00 NKD1 85407 mdanderson.org 37 16 50659443 50659443 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_033119 exon6 c.G414T p.W138C GGAGTGGACCTTC 48 3 0.06 42 0 0 2 0 0.00 VPS53 55275 mdanderson.org 37 17 531342 531342 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001128159 exon9 c.C817A p.Q273K TTTCTTGAAAAAG 92 4 0.04 49 0 0 17 0 0.00 TAOK1 57551 mdanderson.org 37 17 27844489 27844489 + Missense_Mutation SNP A A G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_020791 exon16 c.A1723G p.S575G AACCAGAGTACCC 61 3 0.05 57 0 0 7 0 0.00 MYCBPAP 84073 broad.mit.edu 37 17 48585969 48585969 + Silent SNP T T G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . MYCBPAP NM_032133 exon1 c.T63G p.G21G GGCGGGTGCGGCG 168 50 0.30 120 32 0.2666666667 135 2 0 0.00 LINGO3 645191 mdanderson.org 37 19 2291582 2291582 + Missense_Mutation SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001101391 exon2 c.G194A p.R65H CGGATGCGGTTGC 17 2 0.12 13 0 0 2 0 0.00 DOCK6 57572 mdanderson.org 37 19 11353781 11353781 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_020812 exon13 c.C1434A p.D478E CCTCATGTCAGCC 48 3 0.06 73 0 0 15 0 0.00 KLK5 25818 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 51453209 51453209 + Silent SNP C C A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_012427 exon3 c.G237T p.P79P CTGCCACGGCTGG 47 21 0.45 68 0 0 0 0 EPAS1 2034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 46603853 46603853 + Missense_Mutation SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001430 exon9 c.G1210A p.A404T CAGCTGGCTCCCA 96 21 0.22 70 0 0 52 8 0.15 . 400986 broad.mit.edu 37 2 96646519 96646519 + Missense_Mutation SNP T T A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c ENSG00000174501,NS,carcinoma,0,2 . . . . . ACAGCATGTATGA 231 5 0.02 185 0 0 2 0 0 BIN1 274 mdanderson.org 37 2 127825793 127825793 + Nonsense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_139343 exon7 c.C558A p.C186X GCCTTGGCACCAC 42 3 0.07 35 0 0 22 0 0.00 POTEE 445582 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 131975985 131975985 + Missense_Mutation SNP G G C novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001083538 exon1 c.G10C p.E4Q GTGGTTGAGGTTG 456 102 0.22 406 0 0 0 0 ANKRD30BL 554226 broad.mit.edu 37 2 132919192 132919192 + Silent SNP G G A rs111295191 bycluster TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . ANKRD30BL . . . . AGAGTCGTTGTTG 181 4 0.02 146 1 0.0068493151 36 0 0 KCNH7 90134 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 163374508 163374508 + Silent SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . KCNH7 NM_033272 exon4 c.C624T p.C208C GGGGCTGCAGCTT 230 9 0.04 225 0 0 378 0 0 ABCA12 26154 broad.mit.edu 37 2 215840567 215840567 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . ABCA12 NM_173076 exon34 c.C5323A p.P1775T TCTCTGGATAACT 189 5 0.03 145 0 0 368 0 0 NCAM2 4685 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 22664454 22664454 + Missense_Mutation SNP T T A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . NCAM2 NM_004540 exon5 c.T512A p.L171Q ATAACCTGCAGAT 159 28 0.18 125 1 0.008 220 0 0 SON 6651 hgsc.bcm.edu 37 21 34927489 34927489 + Silent SNP G G C novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c SON_ENST00000300278,NS,carcinoma,0,2 SON_ENST00000300278 NM_032195 exon3 c.G5952C p.R1984R CCGCCGGAGCCGC 22 5 0.23 11 1 0.0909090909 0 2 38 2 0.05 COL18A1 80781 broad.mit.edu 37 21 46876429 46876430 + Frame_Shift_Ins INS - - C novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . COL18A1 . . . . CCCGAGGCCCCCG 74 4 0.05 37 0 0 129 1 0 0.00 MORC2 22880 mdanderson.org 37 22 31337530 31337530 + Silent SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_014941 exon10 c.C528A p.R176R GAACGAGCGCCGC 53 3 0.06 59 0 0 37 0 0.00 BAIAP2L2 80115 mdanderson.org 37 22 38503888 38503888 + Silent SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_025045 exon4 c.C247A p.R83R AGTGCCGCTGGGT 51 3 0.06 65 0 0 38 0 0.00 MFSD1 64747 broad.mit.edu;mdanderson.org 37 3 158538116 158538116 + Splice_Site SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c MFSD1,NS,carcinoma,0,1 MFSD1 NM_001167903 exon8 c.893+1G>T . TGGGAAGTGAGTA 146 5 0.03 105 0 0 88 1 0 0 CHRD 8646 mdanderson.org 37 3 184104344 184104344 + Missense_Mutation SNP T T G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_003741 exon16 c.T1997G p.V666G AGGGGGTGCGGGC 70 20 0.29 54 16 0.2962962963 7 0 0.00 SDHAP2 0 broad.mit.edu 37 3 195412436 195412440 + RNA DEL AAAGC AAAGC - novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 AAAGC AAAGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . TTTTGTAAAGCAA 9 2 0.22 10 0 0 6 0 0.00 GSX2 170825 broad.mit.edu 37 4 54966900 54966900 + Missense_Mutation SNP A A C novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . GSX2 NM_133267 exon1 c.A389C p.H130P ACCACCACCCGCC 71 18 0.25 68 20 0.2941176471 27 0 0 CLOCK 9575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 56319847 56319847 + Missense_Mutation SNP A A G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_004898 exon14 c.T1127C p.V376A TACCTTACTACAG 157 59 0.38 207 0 0 2 1 0.50 PF4V1 5197 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 74719119 74719119 + Missense_Mutation SNP C C G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . PF4V1 NM_002620 exon1 c.C40G p.R14G GCCACCCGCCAGG 151 64 0.42 213 1 0.0046948357 8 0 0 TRPC3 7222 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 122831506 122831506 + Missense_Mutation SNP T T C novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001130698 exon6 c.A1595G p.E532G GGTCCTTCCAGCC 57 19 0.33 61 0 0 0 0 SMARCA5 8467 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 144471183 144471186 + Frame_Shift_Del DEL TTGA TTGA - novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 TTGA TTGA Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . SMARCA5 NM_003601 exon23 c.3018_3021del p.1006_1007del ATTACTTTGATTG 90 31 0.34 101 0 0 73 142 0 0.00 GLRB 2743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 158057651 158057651 + Missense_Mutation SNP A A G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_000824 exon5 c.A328G p.K110E AGACAAAAATGGA 151 63 0.42 175 0 0 3 1 0.33 . 0 bcgsc.ca 37 4 189659658 189659658 + RNA SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . CCAGGCGGGGTCT 250 21 0.08 297 0 0 7 0 0.00 FLJ33360 0 broad.mit.edu 37 5 6337066 6337067 + RNA DEL AC AC - rs371668571 alternate_allele TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 AC AC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . ATACATACACACA 11 4 0.36 9 0 0 0 0 . 0 bcgsc.ca 37 5 110320031 110320031 + RNA SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . AGCAACCACTTCT 30 10 0.33 31 0 0 0 0 FCHSD1 89848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 141026222 141026223 + Missense_Mutation DNP CG CG AT novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 CG CG Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_033449 exon11 c.C991A p.R331I GTCAAGCGCTGAA 40 10 0.25 32 0 0 15 0 0.00 TFAP2A 7020 broad.mit.edu;mdanderson.org 37 6 10402739 10402739 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . TFAP2A NM_003220 exon5 c.C869A p.T290K AGTGATGTGAGCA 85 4 0.05 129 0 0 129 0 0 HIVEP1 3096 broad.mit.edu;mdanderson.org 37 6 12121061 12121061 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . HIVEP1 NM_002114 exon4 c.G1033T p.V345F TCTCAGGTTACTC 90 5 0.06 137 0 0 242 6 0 0.00 TJAP1 93643 mdanderson.org 37 6 43473144 43473144 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001146017 exon10 c.G1225T p.D409Y GAAGAGGACCTGC 48 3 0.06 33 0 0 65 0 0.00 PRIM2 5558 bcgsc.ca 37 6 57398202 57398202 + RNA SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . PRIM2 . . . . ATCTTTGTCATGG 237 16 0.07 219 1 0.00456621 95 27 8 0.30 MTRF1L 54516 broad.mit.edu;mdanderson.org 37 6 153323668 153323668 + Silent SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . MTRF1L NM_019041 exon1 c.G153A p.A51A AGACCCCGCCTGG 220 52 0.24 126 1 0.0079365079 21 4 2 0.50 TCP10 6953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 167789494 167789494 + Silent SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_004610 exon6 c.C648A p.A216A CGTGGTGGCCTGG 111 41 0.37 85 0 0 0 0 MLLT4 4301 broad.mit.edu 37 6 168366528 168366541 + Frame_Shift_Del DEL CGCCCGGTCTGTGC CGCCCGGTCTGTGC - novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 CGCCCGGTCTGTGC CGCCCGGTCTGTGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . MLLT4 NM_001207008 exon30 c.4988_4993del p.1663_1665del CCGAGGCGCCCGG 38 8 0.21 27 0 0 351 24 0 0.00 C7orf26 79034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 6631350 6631350 + Missense_Mutation SNP C C G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_024067 exon2 c.C266G p.S89C AGGACTCTGTTCG 251 74 0.29 177 0 0 45 8 0.18 URGCP 55665 mdanderson.org 37 7 43917157 43917157 + Silent SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001077663 exon6 c.G1905A p.R635R CGGCAGCCTCCCT 47 3 0.06 39 0 0 29 0 0.00 EPHB6 2051 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 7 142562074 142562074 + Silent SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_004445 exon7 c.C516T p.S172S CTCCTCCTCTTCT 103 5 0.05 70 0 0 8 0 0.00 SPAG11B 10407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 7308297 7308297 + Missense_Mutation SNP C C G rs370915382 alternate_allele TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c SPAG11B_ENST00000398462,NS,carcinoma,0,2 SPAG11B_ENST00000398462 NM_058201 exon3 c.G340C p.V114L TTGATACGCAACA 250 59 0.24 355 0 0 0 2 0 0 LGI3 203190 mdanderson.org 37 8 22005965 22005965 + Missense_Mutation SNP T T C novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_139278 exon8 c.A1355G p.E452G GTACCCTCCCAGC 46 3 0.07 62 1 0.0161290323 0 0 LRRCC1 85444 broad.mit.edu 37 8 86019547 86019547 + Missense_Mutation SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c LRRCC1,colon,carcinoma,0,2 LRRCC1 NM_033402 exon1 c.C17T p.A6V CGGCGGCGGTGGT 67 4 0.06 54 1 0.0185185185 212 2 3 0 0.00 PHF20L1 51105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133849987 133849987 + Missense_Mutation SNP G G A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_016018 exon17 c.G2122A p.V708M CACAGCGTGTGCA 49 15 0.31 67 0 0 13 3 0.23 PLEC 5339 mdanderson.org 37 8 144992599 144992599 + Missense_Mutation SNP A A T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_201380 exon32 c.T11801A p.L3934Q AGCCGCAGGGCCT 31 3 0.10 18 0 0 72 0 0.00 PARP10 84875 mdanderson.org 37 8 145058391 145058391 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_032789 exon6 c.C1667A p.T556K AGGCCTGTGTCCA 51 3 0.06 65 0 0 59 0 0.00 . 0 bcgsc.ca 37 9 67334944 67334944 + RNA SNP C C T rs56215557 bycluster TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . TGTGCACGTCCTG 29 8 0.28 18 0 0 13 0 0.00 FAM22G 441457 mdanderson.org 37 9 99699464 99699464 + Silent SNP A A G rs2986890 TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001045477 exon5 c.A1101G p.A367A GCCAGCAGAGACC 101 5 0.05 89 2 0.0224719101 0 0 PKN3 29941 hgsc.bcm.edu;mdanderson.org 37 9 131469216 131469216 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_013355 exon5 c.G565T p.V189F CTGCACGTTGAGG 60 4 0.07 41 0 0 7 0 0.00 NUP188 23511 broad.mit.edu;mdanderson.org 37 9 131763859 131763859 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . NUP188 NM_015354 exon35 c.G3895T p.D1299Y GACGAGGATGGTG 102 5 0.05 87 0 0 140 65 1 0.02 TLR7 51284 broad.mit.edu;bcgsc.ca 37 X 12903721 12903721 + Frame_Shift_Del DEL A A - novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . TLR7 NM_016562 exon3 c.94delA p.K32fs TTTCCTAAAACTC 369 67 0.18 272 0 0 125 7 0 0.00 CYLC1 1538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 83128817 83128817 + Silent SNP A A G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_021118 exon4 c.A1101G p.P367P GTACCCAGAGTCT 136 64 0.47 80 0 0 0 0 . 0 bcgsc.ca 37 X 100793480 100793480 + RNA SNP C C T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . . . . . AACTTCCTCTTCC 65 13 0.20 61 1 0.0163934426 0 0 RHOXF1 158800 mdanderson.org 37 X 119249677 119249677 + Missense_Mutation SNP G G T novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_139282 exon1 c.C96A p.S32R TTCTGCGCTTGAT 46 3 0.07 38 0 0 4 0 0.00 GPC3 2719 broad.mit.edu 37 X 133119396 133119396 + Silent SNP C C G novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . GPC3 NM_001164617 exon1 c.G81C p.P27P CGGCGGCGGGGGC 250 5 0.02 135 1 0.0074074074 88 673 5 0.01 UTY 7404 mdanderson.org 37 Y 15478190 15478190 + Nonsense_Mutation SNP C C A novel TCGA-2G-AALW-01A-11D-A42Y-10 TCGA-2G-AALW-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 413dad16-996e-44ad-9776-24e1903940a6 4f4f8383-263b-44c7-b5f1-c4c9e594f26c . . NM_001258259 exon10 c.G823T p.E275X CTGCCTCCAAAGA 43 3 0.07 253 1 0.0039525692 4 0 0.00