Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CHD5 26038 mdanderson.org 37 1 6194211 6194211 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_015557 exon20 c.C3121A p.H1041N CACGGTGCCCCTC 34 3 0.09 39 0 0 0 0 SLC45A1 50651 mdanderson.org 37 1 8390578 8390578 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001080397 exon4 c.G1025A p.S342N CGCCCAGCCCCCT 75 4 0.05 59 0 0 3 0 0.00 EFHD2 79180 mdanderson.org 37 1 15736569 15736569 + Silent SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_024329 exon1 c.G102A p.A34A GGCAGCGGCGGCG 19 2 0.11 15 0 0 0 0 EPHA2 1969 bcgsc.ca 37 1 16462158 16462158 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . EPHA2 NM_004431 exon6 c.C1420A p.R474S TCTTGCGGTAAGT 56 4 0.07 49 0 0 102 34 0 0.00 SERINC2 347735 broad.mit.edu 37 1 31897662 31897662 + Missense_Mutation SNP A A C novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . SERINC2 NM_001199038 exon4 c.A361C p.T121P TTTTTCACCCTGC 72 12 0.17 75 8 0.1066666667 44 170 24 0.14 SPOCD1 90853 mdanderson.org 37 1 32259490 32259490 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_144569 exon12 c.C2392A p.P798T TCGAGGGCTCCCA 38 3 0.08 39 0 0 4 0 0.00 S100PBP 64766 mdanderson.org 37 1 33295580 33295580 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_022753 exon5 c.G936T p.T312T TCCGACGTTTTCA 44 3 0.07 62 0 0 36 0 0.00 CLCC1 23155 broad.mit.edu 37 1 109492518 109492518 + Missense_Mutation SNP T T C novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . CLCC1 NM_001048210 exon3 c.A155G p.K52R ACATCCTTTTCCC 541 5 0.01 418 1 0.0023923445 55 40 0 0.00 RGS4 5999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 163043412 163043412 + Silent SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001102445 exon5 c.G669A p.E223E CAAAGAGGTAGGT 133 31 0.23 114 0 0 17 6 0.35 ATP2B4 493 hgsc.bcm.edu;broad.mit.edu 37 1 203667380 203667380 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001001396 exon3 c.G289T p.V97L GAATTAGTGTGGG 98 5 0.05 93 0 0 27 0 0.00 UNC5B 219699 mdanderson.org 37 10 73051501 73051501 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_170744 exon10 c.G1607T p.G536V TCTTGGGCCTGCC 21 3 0.14 33 0 0 48 0 0.00 SORBS1 10580 mdanderson.org 37 10 97082525 97082525 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001034956 exon25 c.C2456A p.T819K GATTCTGTGAGAT 35 3 0.09 46 0 0 0 0 SEMA4G 57715 mdanderson.org 37 10 102743827 102743827 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_017893 exon14 c.G2471A p.R824H TCAGCCGCATCCT 39 3 0.08 52 0 0 44 0 0.00 TDRD1 56165 mdanderson.org 37 10 115971626 115971626 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_198795 exon14 c.G1662T p.E554D TTCAGAGGATGAT 51 3 0.06 71 0 0 0 0 MUC2 4583 mdanderson.org 37 11 1093185 1093185 + Silent SNP C C T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_002457 exon30 c.C5004T p.T1668T ACCCACCGGCACA 13 2 0.15 19 0 0 6 0 0.00 ZNF143 7702 hgsc.bcm.edu 37 11 9519221 9519221 + Splice_Site SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_003442 exon10 c.842-1G>T . CTTAAAGGTTATG 107 5 0.05 95 0 0 1 0 0.00 EIF4G2 1982 broad.mit.edu 37 11 10820574 10820574 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . EIF4G2 NM_001172705 exon21 c.C2623A p.Q875K ACTCTTGGGTTAT 247 5 0.02 222 1 0.0045045045 89 2448 0 0.00 OR4A16 81327 hgsc.bcm.edu 37 11 55110715 55110715 + Silent SNP G G A rs77981146 bycluster;byfrequency;by1000genomes TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 OR4A16,NS,lymphoid_neoplasm,0,1 OR4A16 NM_001005274 exon1 c.G39A p.L13L CCTCCTGGGCCTC 22 3 0.14 28 1 0.0357142857 0.006 0 1 0 0 PTGDR2 11251 mdanderson.org 37 11 60621184 60621184 + Silent SNP G G A rs145585912 TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_004778 exon2 c.C12T p.N4N TGTGGCGTTGGCC 21 2 0.10 13 0 0 0 0 0 C11orf53 341032 mdanderson.org 37 11 111156435 111156435 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_198498 exon4 c.G367T p.A123S GTGTCTGCCGATG 28 3 0.11 40 0 0 0 0 FAM138D 677784 hgsc.bcm.edu 37 12 148526 148526 + RNA SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . . . . . AGAGCTGTTTGTT 64 21 0.33 21 0 0 0 0 PDE3A 0 broad.mit.edu 37 12 20522114 20522115 + RNA INS - - GCGT rs138187101 bycluster;by1000genomes TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . PDE3A . . . . GGGAAGAGCGTGC 25 17 0.68 9 0 0 184 13 0 0.00 LHX5 64211 mdanderson.org 37 12 113907120 113907120 + Silent SNP C C A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_022363 exon2 c.G204T p.A68A GCCTTGCGCGCAG 47 3 0.06 25 0 0 0 0 UBAC2 337867 mdanderson.org 37 13 99853189 99853189 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001144072 exon1 c.G27T p.G9G CAGTGGGCTCTGT 39 3 0.08 36 0 0 77 0 0.00 MYH6 4624 mdanderson.org 37 14 23853812 23853812 + Missense_Mutation SNP C C T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_002471 exon36 c.G5404A p.A1802T GCTCGGCCTCGTC 47 3 0.06 57 0 0 4 0 0.00 TRAF3 7187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 103355943 103355943 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_145725 exon8 c.G698A p.S233N CCTGTAGTTTTAA 65 11 0.17 72 0 0 16 7 0.44 C15orf52 388115 mdanderson.org 37 15 40631802 40631802 + Missense_Mutation SNP G G A rs372352300 TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_207380 exon3 c.C274T p.R92W CCTGCCGACGGTC 47 3 0.06 22 0 0 9 0 0.00 DLL4 54567 mdanderson.org 37 15 41228737 41228737 + Nonsense_Mutation SNP G G T rs201981567 alternate_allele TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_019074 exon9 c.G1552T p.E518X CGCTGCGAGTTCC 44 3 0.07 29 0 0 25 0 0.00 MIR627 693212 mdanderson.org 37 15 42491770 42491770 + RNA SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . . . . . CCATTAGTAGTAT 46 3 0.07 30 0 0 0 0 FANCI 55215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 89824446 89824446 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001113378 exon15 c.G1427A p.S476N TTCAAAGTTGTTC 184 50 0.27 143 0 0 42 14 0.33 ZNF205 7755 mdanderson.org 37 16 3169647 3169647 + Missense_Mutation SNP C C T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001042428 exon7 c.C986T p.T329M GGCGCACGCACAC 20 2 0.10 27 0 0 70 0 0.00 LOC653786 0 broad.mit.edu 37 16 22579567 22579568 + RNA INS - - CCA novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . . . . . GGTTAATTCATCC 45 7 0.16 48 2 0.0416666667 0 0 HIRIP3 8479 mdanderson.org 37 16 30005069 30005069 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_003609 exon5 c.C1300T p.R434W AGGCCCGAATGTA 30 3 0.10 26 0 0 125 0 0.00 . 0 bcgsc.ca 37 16 32403532 32403532 + RNA SNP T T A rs75037542 bycluster TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . . . . . TTCTTATGAAAAT 44 12 0.27 50 2 0.04 0 0 PHKB 5257 mdanderson.org 37 16 47531349 47531349 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 PHKB_ENST00000323584,NS,carcinoma,0,3 PHKB_ENST00000323584 NM_000293 exon2 c.G116T p.R39I TTCCAAGACCTGA 30 3 0.10 39 0 0 0 3 22 0 0.00 SPG7 6687 mdanderson.org 37 16 89598891 89598891 + Missense_Mutation SNP C C T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 SPG7_ENST00000341316,NS,carcinoma,0,8 SPG7_ENST00000341316 NM_003119 exon9 c.C1171T p.R391W CGTGTGCGGAGCC 49 3 0.06 57 0 0 0 8 97 0 0.00 DNAH2 146754 hgsc.bcm.edu 37 17 7637830 7637830 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_020877 exon6 c.G782T p.S261I TGCTCAGTGCCCA 80 4 0.05 46 0 0 0 0 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 200 11 0.06 112 5 0.0446428571 40 13 0.33 RASL10B 91608 mdanderson.org 37 17 34062225 34062225 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_033315 exon2 c.G22T p.A8S CGGGTGGCCGTGC 41 3 0.07 32 0 0 18 0 0.00 IKZF3 22806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37922278 37922278 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 IKZF3,NS,neuroblastoma,+1,1 IKZF3 NM_012481 exon8 c.C1295T p.P432L CAGATGGGCGGGG 119 37 0.31 79 0 0 1 1 1 0 0.00 LPIN2 9663 mdanderson.org 37 18 2951054 2951054 + Nonsense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_014646 exon4 c.C589T p.R197X CCTACCGTGCTGC 50 3 0.06 50 0 0 14 0 0.00 SOGA2 23255 mdanderson.org 37 18 8784400 8784400 + Silent SNP C C T rs145456770 TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_015210 exon6 c.C1290T p.S430S CGGGAGCGGGAAG 41 3 0.07 31 0 0 0 7 0 0.00 SMAD7 4092 mdanderson.org 37 18 46476633 46476633 + Silent SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_005904 exon1 c.C162T p.G54G GCCCGGGCCGCCG 12 2 0.17 13 0 0 2 0 0.00 KANK3 256949 mdanderson.org 37 19 8387794 8387794 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_198471 exon11 c.C2395A p.P799T AGCCAGGGGGTGA 43 3 0.07 28 0 0 48 0 0.00 BRD4 23476 mdanderson.org 37 19 15367969 15367969 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 BRD4_ENST00000263377,NS,carcinoma,0,2 BRD4_ENST00000263377 NM_058243 exon8 c.C1357T p.R453C CAAAGCGCATTTC 41 3 0.07 45 0 0 0 2 106 0 0.00 GRAMD1A 57655 mdanderson.org 37 19 35502430 35502430 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_020895 exon7 c.G578A p.R193H TCTTCCGCCTCTG 43 3 0.07 24 0 0 309 1 0.00 CAPNS1 826 broad.mit.edu 37 19 36631958 36631958 + Silent SNP C C G novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . CAPNS1 NM_001749 exon2 c.C45G p.G15G CGGCGGCGGGGGA 114 5 0.04 83 1 0.0120481928 19 15 0 0.00 HRC 3270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49657880 49657880 + Silent SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_002152 exon1 c.C615T p.A205A AGTGGAGGCCTCC 60 16 0.27 54 0 0 5 3 0.60 TRAPPC12 51112 broad.mit.edu 37 2 3481509 3481509 + Missense_Mutation SNP A A G novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_016030 exon10 c.A1820G p.E607G ACGTTGAGAAAGT 336 7 0.02 256 0 0 170 6 0.04 SNX17 9784 mdanderson.org 37 2 27598736 27598736 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_014748 exon11 c.G1002T p.T334T AAGCACGAGCAGC 36 3 0.08 24 0 0 477 1 0.00 STEAP3 55240 mdanderson.org 37 2 120005329 120005329 + Silent SNP C C T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_182915 exon4 c.C597T p.P199P CATGCCCGTGGAC 20 2 0.10 26 0 0 22 0 0.00 SPEG 10290 mdanderson.org 37 2 220313115 220313115 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_005876 exon4 c.G1235A p.R412H GACGGCGCAGCCT 19 2 0.11 15 0 0 9 0 0.00 ALPPL2 251 mdanderson.org 37 2 233271628 233271628 + Silent SNP C C G rs61730279 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_031313 exon1 c.C24G p.L8L GCTGCTCCTGCTG 43 4 0.09 66 1 0.0151515152 0 0 SPATA25 128497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 44515336 44515336 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_080608 exon2 c.C504A p.P168P TGGGACGGGCACG 65 19 0.29 55 0 0 2 1 0.50 SAMD10 140700 mdanderson.org 37 20 62607102 62607102 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_080621 exon4 c.C529A p.Q177K GCACCTGCTGCAG 17 2 0.12 12 0 0 9 0 0.00 SCAF4 57466 broad.mit.edu 37 21 33074607 33074607 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 SCAF4,NS,carcinoma,+1,1 SCAF4 NM_020706 exon5 c.C407T p.A136V GTTCCCGCTGCCA 254 7 0.03 178 0 0 142 1 39 0 0.00 C22orf43 51233 broad.mit.edu 37 22 23974156 23974156 + Missense_Mutation SNP T T C novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . C22orf43 NM_016449 exon1 c.A55G p.K19E CGTCCTTCCCCCT 151 6 0.04 122 1 0.0081967213 18 3 0 0.00 MKL1 57591 mdanderson.org 37 22 40807620 40807620 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_020831 exon15 c.C2570A p.P857H GACGGGGGGTGGT 34 3 0.09 37 0 0 117 0 0.00 TNFRSF13C 115650 mdanderson.org 37 22 42322228 42322228 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_052945 exon2 c.C244A p.P82T GCGCGGGGGCGCC 19 2 0.11 19 0 0 2 0 0.00 CPT1B 1375 mdanderson.org 37 22 51016324 51016324 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001145135 exon2 c.C21A p.A7A GGCCACGGCCTGG 32 3 0.09 26 0 0 38 0 0.00 SCN11A 11280 mdanderson.org 37 3 38986945 38986945 + Missense_Mutation SNP C C A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_014139 exon3 c.G445T p.G149W CAGGCCCTGTAGC 53 3 0.06 61 0 0 0 0 CCR9 10803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 45943034 45943034 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_031200 exon3 c.G754A p.A252T CACAAAGCCCTAA 83 24 0.29 92 0 0 0 0 PLXNB1 5364 mdanderson.org 37 3 48454325 48454325 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001130082 exon25 c.C4680A p.G1560G GCCGCTGCCCAGG 34 3 0.09 39 0 0 59 0 0.00 CNTN3 5067 mdanderson.org 37 3 74548917 74548917 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_020872 exon2 c.C75A p.G25G TACAGGGCCTTGT 45 3 0.07 58 0 0 5 0 0.00 ROBO1 6091 mdanderson.org 37 3 78706359 78706359 + Missense_Mutation SNP A A G novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_002941 exon18 c.T2503C p.F835L CGGAAAAGGTGGA 45 4 0.09 67 0 0 55 0 0.00 H1FOO 132243 broad.mit.edu 37 3 129268107 129268108 + Frame_Shift_Ins INS - - A rs150160917 bycluster;by1000genomes TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . H1FOO NM_153833 exon3 c.642_643insA p.A214fs AGAGGCTAGGAAG 80 7 0.09 90 0 0 20 0 0 CLDN18 51208 mdanderson.org 37 3 137742658 137742658 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_016369 exon2 c.G379T p.V127F TTCATTGTCTCAG 49 3 0.06 57 0 0 4 0 0.00 MUC4 4585 mdanderson.org 37 3 195509308 195509308 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_018406 exon2 c.C9143T p.S3048L GATGCTGAGGAAG 115 5 0.04 33 1 0.0303030303 0 0 KIAA1109 84162 mdanderson.org 37 4 123283210 123283210 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_015312 exon84 c.G14826T p.K4942N AAGAAAGATTGAT 31 3 0.10 36 0 0 95 0 0.00 LRBA 987 bcgsc.ca 37 4 151236743 151236743 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . LRBA NM_006726 exon52 c.C7696A p.Q2566K GCAGCTGGTATGG 51 4 0.08 36 0 0 253 35 0 0.00 PCDHB10 56126 mdanderson.org 37 5 140573922 140573922 + Silent SNP C C T rs376773467 bycluster TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_018930 exon1 c.C1797T p.N599N CCAGAACGCCTGG 11 2 0.18 10 0 0 0 0 DBN1 1627 hgsc.bcm.edu 37 5 176884449 176884449 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_080881 exon15 c.C1941A p.F647L ACCCTCGAAGCCC 84 4 0.05 80 0 0 411 2 0.00 GRM4 2914 mdanderson.org 37 6 34026771 34026771 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 GRM4_ENST00000374181,NS,malignant_melanoma,-1,6 GRM4_ENST00000374181 NM_001256811 exon5 c.C1007A p.P336H CTCTTGGGGAGGA 36 3 0.08 20 0 0 -1 6 1 0 0.00 ETV7 51513 mdanderson.org 37 6 36339272 36339272 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_016135 exon5 c.C499A p.L167I TGGTAAGCCCTGG 47 3 0.06 32 0 0 11 0 0.00 FOXP4 116113 mdanderson.org 37 6 41556457 41556457 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001012426 exon9 c.G1053T p.Q351H GCAGCAGCTGGAG 46 4 0.09 40 0 0 194 0 0.00 ECT2L 345930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 139223666 139223666 + Missense_Mutation SNP C C T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001195037 exon21 c.C2617T p.P873S CAGGGTCCAAAAT 45 14 0.31 47 0 0 0 0 KIF25 3834 mdanderson.org 37 6 168443364 168443364 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_030615 exon8 c.G953T p.S318I GGAACAGCAGGCT 40 3 0.08 35 0 0 1 0 0.00 PMS2P3 0 broad.mit.edu 37 7 75142330 75142330 + RNA DEL T T - novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . PMS2P3 . . . . TTCCTCTTTTTTT 7 3 0.43 5 0 0 7 2 0 0.00 LAPTM4B 55353 mdanderson.org 37 8 98788291 98788291 + Nonsense_Mutation SNP C C A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_018407 exon1 c.C327A p.C109X CTTGTGCTGCCAT 44 3 0.07 20 0 0 170 0 0.00 BAI1 575 mdanderson.org 37 8 143614695 143614695 + Silent SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001702 exon24 c.G3438T p.L1146L GCTGCTGGCGCTG 37 3 0.08 22 0 0 8 0 0.00 JAK2 3717 mdanderson.org 37 9 5064922 5064922 + Missense_Mutation SNP G G T rs375678155 alternate_allele TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_004972 exon9 c.G1096T p.V366L TCTTTCGTGTCAT 40 3 0.08 33 0 0 7 0 0.00 ACO1 48 mdanderson.org 37 9 32431768 32431768 + Missense_Mutation SNP G G T novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_002197 exon15 c.G1778T p.R593I CGACTAGAGACGA 49 3 0.06 57 0 0 34 0 0.00 LAMC3 10319 mdanderson.org 37 9 133936554 133936554 + Missense_Mutation SNP C C T rs138199679 TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_006059 exon13 c.C2291T p.T764M CCTGTACGACCAT 20 2 0.10 25 0 0 0 68 0 0.00 VCX 26609 bcgsc.ca 37 X 7811810 7811810 + Missense_Mutation SNP G G C rs149395826 TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . VCX NM_013452 exon3 c.G374C p.S125T CACTGAGTCAGGA 176 12 0.07 90 0 0 28 6 0 0.00 TSC22D3 1831 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 106957876 106957876 + Missense_Mutation SNP T T C novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_198057 exon3 c.A476G p.E159G GTGTTCTCACGCT 122 5 0.04 62 0 0 406 1 0.00 BRCC3 79184 mdanderson.org 37 X 154305544 154305544 + Missense_Mutation SNP G G A novel TCGA-2G-AALX-01A-11D-A42Y-10 TCGA-2G-AALX-10A-01D-A433-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5cf2e58a-b110-4629-ad4d-c9d3e9ae9fd1 6f7b63d6-eada-4f34-bd4c-3740da653338 . . NM_001242640 exon4 c.G298A p.A100T CTGTCTGCAGCTT 38 3 0.08 19 0 0 35 0 0.00