Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CYP4B1 1580 hgsc.bcm.edu 37 1 47276567 47276567 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_000779 exon2 c.G268T p.G90C TTCATTGGCTTCC 61 4 0.07 60 0 0 0 0 ORC1 4998 broad.mit.edu 37 1 52859133 52859133 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . ORC1 NM_004153 exon6 c.C1064A p.P355Q TTTTCTGGTTTCA 171 5 0.03 188 0 0 79 74 0 0.00 ACP6 51205 broad.mit.edu 37 1 147142085 147142085 + Missense_Mutation SNP A A C rs201678741 TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . ACP6 NM_016361 exon1 c.T86G p.V29G AGGGCCACCCGCC 95 33 0.35 57 16 0.2807017544 36 35 5 0.14 PRRC2C 23215 broad.mit.edu 37 1 171535453 171535453 + Nonsense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_015172 exon21 c.G6193T p.E2065X GGAAATGAAAATG 544 7 0.01 369 0 0 271 0 0.00 METTL13 51603 broad.mit.edu 37 1 171759606 171759606 + Frame_Shift_Del DEL A A - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . METTL13 NM_015935 exon5 c.1324delA p.K442fs AAGCGGAAAAAGG 543 9 0.02 342 0 0 67 132 0 0.00 PLXNA2 5362 broad.mit.edu 37 1 208224629 208224629 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . PLXNA2 NM_025179 exon16 c.C3133A p.R1045S CGATGCGCTGGAC 438 7 0.02 290 1 0.0034482759 178 199 0 0.00 SLC29A3 55315 hgsc.bcm.edu 37 10 73121735 73121735 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_018344 exon6 c.G798T p.A266A TCTTGCGGCCCAT 118 3 0.03 77 0 0 45 0 0.00 KAT6B 23522 mdanderson.org 37 10 76788681 76788681 + Nonsense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_012330 exon18 c.G4099T p.E1367X GAAGAAGAGGAAG 32 3 0.09 33 0 0 46 0 0.00 ZFYVE27 118813 mdanderson.org 37 10 99504637 99504637 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001002261 exon3 c.G420T p.L140L TCGCCTGTCTCGT 46 3 0.07 20 0 0 41 0 0.00 KRTAP5-5 439915 bcgsc.ca 37 11 1651127 1651127 + Silent SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . KRTAP5-5 NM_001001480 exon1 c.C57T p.S19S TGGCTCCGGCTGT 105 7 0.07 95 0 0 86 0 0 MRGPRE 116534 mdanderson.org 37 11 3249138 3249138 + Missense_Mutation SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001039165 exon2 c.G892A p.A298T TGACGGCCCCCAG 17 2 0.12 27 0 0 0 0 SAAL1 113174 mdanderson.org 37 11 18127494 18127494 + Missense_Mutation SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_138421 exon1 c.G95A p.S32N TGTTTGCTGTAGA 46 3 0.07 44 0 0 48 0 0.00 NAT10 55226 mdanderson.org 37 11 34153768 34153768 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_024662 exon15 c.G1617T p.K539N CTACAAGGTAACT 76 4 0.05 91 0 0 86 0 0.00 TMEM132A 54972 mdanderson.org 37 11 60698031 60698031 + Missense_Mutation SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_017870 exon5 c.C916T p.P306S GCCCAGCCCACAC 39 3 0.08 47 0 0 96 0 0.00 AP5B1 91056 broad.mit.edu 37 11 65545364 65545364 + Missense_Mutation SNP G G T rs375436485 alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . AP5B1 NM_138368 exon2 c.C2600A p.A867E TCCCCCGCCAGGG 58 3 0.05 61 0 0 40 11 0 0.00 DLG2 1740 mdanderson.org 37 11 84028172 84028172 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001206769 exon1 c.C17A p.T6N TGCTTGGTGAGGT 44 3 0.07 75 0 0 0 0 OR6X1 390260 mdanderson.org 37 11 123624888 123624888 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001005188 exon1 c.C339A p.L113L GATAGTGAGGATC 79 4 0.05 87 0 0 0 0 GXYLT1 283464 hgsc.bcm.edu 37 12 42481617 42481617 + Missense_Mutation SNP G G C rs75740340 bycluster TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 Q8IXV1_HUMAN,NS,carcinoma,+1,2 Q8IXV1_HUMAN NM_173601 exon8 c.C1294G p.R432G CATAACGATCTCT 73 3 0.04 83 0 0 0.002 1 2 20 0 0.00 KCNH3 23416 mdanderson.org 37 12 49943881 49943881 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_012284 exon10 c.G1687T p.D563Y CTCCCTGACGAGC 33 3 0.09 19 0 0 16 0 0.00 SPRYD4 283377 broad.mit.edu 37 12 56862911 56862911 + Silent SNP A A G novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . SPRYD4 NM_207344 exon2 c.A174G p.G58G GGTGGGATTGGAG 63 10 0.16 60 13 0.2166666667 13 49 7 0.14 ZFC3H1 196441 hgsc.bcm.edu;broad.mit.edu 37 12 72023401 72023405 + Frame_Shift_Del DEL TTTCA TTTCA - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 TTTCA TTTCA Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . ZFC3H1 NM_144982 exon19 c.3811_3815del p.1271_1272del CTTTACTTTCATT 72 10 0.14 48 0 0 172 17 0 0.00 CUX2 23316 mdanderson.org 37 12 111776097 111776097 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 CUX2,colon,carcinoma,+2,1 CUX2 NM_015267 exon20 c.G3204T p.R1068R GCAGCGGCTGTTT 37 3 0.08 19 0 0 2 1 23 0 0.00 RNF10 9921 broad.mit.edu 37 12 121004666 121004666 + Missense_Mutation SNP T T C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . RNF10 NM_014868 exon13 c.T1924C p.F642L CAGCAGTTTCCTG 309 7 0.02 255 0 0 75 479 3 0.01 PITPNM2 57605 ucsc.edu 37 12 123475099 123475099 + Silent SNP G G A rs376540906 alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . PITPNM2 NM_020845 exon16 c.C2562T p.I854I CTGGGCGATGCTG 41 4 0.10 31 0 0 105 19 0 0.00 DDX55 57696 broad.mit.edu 37 12 124103201 124103202 + Translation_Start_Site DEL TG TG - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . DDX55 . . . . GTGGTATGTGTGT 95 9 0.09 63 0 0 51 22 0 0.00 SFSWAP 6433 mdanderson.org 37 12 132241078 132241078 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 SFSWAP,colon,carcinoma,-1,1 SFSWAP NM_001261411 exon11 c.G1609T p.G537W GATGCTGGGGAGG 46 3 0.07 32 0 0 -1 1 89 0 0.00 FLT1 2321 mdanderson.org 37 13 28883002 28883002 + Missense_Mutation SNP G G T rs115595062 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_002019 exon28 c.C3698A p.P1233Q GCATTCGGTAAAA 60 4 0.07 94 0 0 14 0 0.00 RFC3 5983 mdanderson.org 37 13 34540232 34540232 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 RFC3_ENST00000434425,NS,carcinoma,0,1 RFC3_ENST00000434425 NM_181558 exon9 c.G888T p.K296N ATGTAAGGAGGAA 46 3 0.07 33 0 0 0 1 4 0 0.00 PCDH8 5100 mdanderson.org 37 13 53420855 53420855 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_002590 exon1 c.C1717A p.R573S GTTGGCGCAGCGT 28 3 0.11 21 0 0 0 0 DIAPH3 81624 mdanderson.org 37 13 60565332 60565332 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001042517 exon12 c.C1321A p.L441I GCTGAAGAATAGA 40 3 0.08 35 0 0 15 0 0.00 NKX2-1 7080 mdanderson.org 37 14 36988198 36988198 + Missense_Mutation SNP A A G novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001079668 exon2 c.T455C p.F152S GCGGGGAAGCGCG 14 6 0.43 11 1 0.0909090909 0 0 SYNE2 23224 mdanderson.org 37 14 64593514 64593514 + Missense_Mutation SNP C C A novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 SYNE2,NS,carcinoma,-2,1 SYNE2 NM_015180 exon73 c.C13906A p.R4636S TACAACCGCAGTT 35 3 0.09 24 0 0 -2 1 30 0 0.00 CCNK 8812 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 99959052 99959052 + Missense_Mutation SNP C C G novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001099402 exon2 c.C38G p.T13S CAGTAACTTCAGC 139 23 0.17 143 0 0 131 26 0.20 . 0 broad.mit.edu;mdanderson.org 37 14 107178963 107178963 + RNA SNP T T G rs374012300 alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . AATCAATGAGTGC 302 15 0.05 267 2 0.0074906367 63 1 0.02 . 283685 bcgsc.ca 37 15 23685618 23685618 + Silent SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . TGCTCCCACATCT 43 6 0.14 35 0 0 0 0 . 388112 bcgsc.ca 37 15 35376761 35376761 + RNA SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . AGGCATCCCTGGT 336 36 0.11 308 0 0 916 0 0.00 CD276 80381 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 73995180 73995180 + Silent SNP C C T rs146911233 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001024736 exon4 c.C486T p.T162T GGTGACCATCACG 125 23 0.18 118 0 0 138 24 0.17 LOC645752 0 broad.mit.edu 37 15 78217296 78217296 + RNA SNP A A G novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . GTGGCAACCACCA 107 13 0.12 95 0 0 0 0 PRR25 388199 mdanderson.org 37 16 863659 863659 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001013638 exon3 c.G1007T p.G336V AGCCCGGGGAGGC 20 2 0.10 13 0 0 0 0 TELO2 9894 mdanderson.org 37 16 1550145 1550145 + Missense_Mutation SNP C C T rs140327619 TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_016111 exon7 c.C982T p.R328W AGCCAGCGGCGCC 33 3 0.09 36 0 0 0 70 0 0.00 RRN3P2 0 broad.mit.edu 37 16 29096900 29096900 + RNA DEL A A - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . TTCTTTAAAAAAA 13 4 0.31 13 0 0 0 0 RRN3P2 0 broad.mit.edu 37 16 29110438 29110438 + RNA SNP T T C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . AGTATCTTCAGAG 390 4 0.01 338 0 0 0 0 RRN3P2 0 broad.mit.edu 37 16 29118702 29118704 + RNA DEL AGC AGC - rs374747642 alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 AGC AGC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . GGTCCAAGCAGCA 38 7 0.18 19 0 0 1 0 0.00 RFWD3 55159 broad.mit.edu 37 16 74660394 74660394 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . RFWD3 NM_018124 exon12 c.C2028A p.D676E TCCAGTGTCATCC 163 5 0.03 137 0 0 49 199 0 0.00 ASIC2 40 mdanderson.org 37 17 31618506 31618506 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_183377 exon1 c.C628A p.R210S CCAGGCGGTCCAT 44 3 0.07 43 0 0 3 0 0.00 KRT33B 3884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39525812 39525812 + Missense_Mutation SNP T T C rs199518913 bycluster;by1000genomes TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 KRT33B,NS,carcinoma,+1,3 KRT33B NM_002279 exon1 c.A191G p.N64S CGGTCGTTCAGGA 166 44 0.27 161 0 0 0 1 3 0 0 RGS9 8787 mdanderson.org 37 17 63221447 63221447 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 RGS9,NS,carcinoma,0,1 RGS9 NM_003835 exon18 c.G1735T p.A579S CGCATGGCTCTGT 30 3 0.10 35 0 0 0 1 0 0 LPIN2 9663 mdanderson.org 37 18 2931429 2931429 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_014646 exon9 c.C1281A p.P427P GGAACCGGGCTCC 33 3 0.09 21 0 0 35 0 0.00 ARID3A 1820 mdanderson.org 37 19 932484 932484 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_005224 exon3 c.G435T p.E145D GGAGGAGGATTAC 52 4 0.08 34 0 0 11 0 0.00 REEP6 92840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1496326 1496326 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_138393 exon4 c.G391T p.G131W TGGAACGGGGCTC 54 6 0.11 49 0 0 268 0 0.00 AMH 268 hgsc.bcm.edu;broad.mit.edu 37 19 2249483 2249484 + Frame_Shift_Del DEL AA AA - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 AA AA Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . AMH NM_000479 exon1 c.151_152del p.51_51del GCCCACAAGAGCC 39 10 0.26 24 0 0 12 18 8 0.44 YIPF2 78992 bcgsc.ca;mdanderson.org 37 19 11038590 11038590 + Missense_Mutation SNP G G A novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . YIPF2 NM_024029 exon3 c.C77T p.A26V GTGGTGGCTGCAT 102 5 0.05 92 0 0 13 271 0 0.00 RASAL3 64926 mdanderson.org 37 19 15574979 15574979 + Missense_Mutation SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_022904 exon2 c.G191A p.R64H ATCGAGCGAGGGG 44 3 0.07 45 0 0 25 0 0.00 COLGALT1 79709 mdanderson.org 37 19 17688822 17688822 + Missense_Mutation SNP G G A rs372215750 TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_024656 exon9 c.G1190A p.R397Q GCTACCGGGACCC 44 3 0.07 60 0 0 207 0 0.00 MYBPC2 4606 broad.mit.edu 37 19 50955169 50955169 + Missense_Mutation SNP C C T rs11879768 bycluster;byfrequency;byhapmap;by1000genomes TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . MYBPC2 NM_004533 exon16 c.C1658T p.A553V AGAATGCGATTGT 234 4 0.02 180 0 0 103 3 0 0.00 KLK2 3817 bcgsc.ca 37 19 51376760 51376760 + Missense_Mutation SNP T T C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . KLK2 NM_001002231 exon1 c.T31C p.S11P GCCTTGTCTGTGG 54 4 0.07 52 0 0 66 0 0 ROCK2 9475 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 11355177 11355178 + Frame_Shift_Del DEL AG AG - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . ROCK2 NM_004850 exon16 c.1725_1726del p.575_576del AGTATCAGACTCT 144 31 0.22 134 0 0 224 15 0 0.00 ARHGEF4 50649 mdanderson.org 37 2 131803741 131803741 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_015320 exon14 c.G2052T p.R684R CAGCCGGCTGGCA 46 3 0.07 50 0 0 28 0 0.00 SCN7A 6332 broad.mit.edu 37 2 167301385 167301385 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . SCN7A NM_002976 exon12 c.C1513A p.P505T TAAATGGTGCCAT 185 4 0.02 169 0 0 410 0 0 HECW2 57520 broad.mit.edu 37 2 197092904 197092904 + Nonsense_Mutation SNP A A C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . HECW2 NM_020760 exon22 c.T3839G p.L1280X TCAAATAAGCCAT 251 6 0.02 208 0 0 239 10 0 0.00 IKZF2 22807 broad.mit.edu 37 2 214012404 214012405 + Frame_Shift_Del DEL AA AA - rs112988286 bycluster TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 AA AA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . IKZF2 . . . . ACACACAAAAAAA 55 9 0.16 46 0 0 71 0 0 NSFL1C 55968 mdanderson.org 37 20 1447419 1447419 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_016143 exon1 c.C51A p.G17G CTCGGCGCCCGTC 31 3 0.10 30 0 0 190 2 0.01 SNRPB2 6629 bcgsc.ca;mdanderson.org 37 20 16721614 16721614 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 SNRPB2,NS,carcinoma,0,1 SNRPB2 NM_003092 exon7 c.G642T p.P214P CACACCGTCCCAT 92 5 0.05 72 0 0 12 1 454 0 0.00 GMEB2 26205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 62221817 62221817 + Silent SNP C C T rs368204390 TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_012384 exon10 c.G1218A p.P406P GGTGGACGGCAGG 108 23 0.21 84 0 0 43 17 0.40 NPBWR2 2832 mdanderson.org 37 20 62738008 62738008 + Silent SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_005286 exon1 c.G177A p.G59G AGTCAGCCCCACA 44 3 0.07 51 0 0 2 0 0.00 EVA1C 59271 mdanderson.org 37 21 33840041 33840041 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_058187 exon4 c.G519T p.E173D CCAGGAGCTGAAA 39 3 0.08 33 0 0 9 0 0.00 MED15 51586 mdanderson.org 37 22 20937421 20937421 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001003891 exon12 c.G1559T p.S520I TCATGAGCCCAGC 50 3 0.06 53 0 0 405 1 0.00 MYH9 4627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 36716924 36716924 + Missense_Mutation SNP G G A novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 MYH9,NS,malignant_melanoma,0,1 MYH9 NM_002473 exon8 c.C787T p.R263C TAGCACGAGATTT 76 12 0.16 65 0 0 0 1 366 41 0.11 MGAT3 4248 broad.mit.edu 37 22 39884889 39884889 + Missense_Mutation SNP T T G novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . MGAT3 NM_002409 exon2 c.T1537G p.W513G GGCGGGTGGCGCC 58 13 0.22 66 16 0.2424242424 65 127 12 0.09 GTDC2 84892 hgsc.bcm.edu 37 3 43121453 43121453 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_032806 exon2 c.C1471A p.Q491K ACGCCTGGCACCG 84 4 0.05 68 0 0 57 0 0.00 GOLGB1 2804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 121448824 121448824 + Missense_Mutation SNP G G A novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_004487 exon3 c.C137T p.T46I TCTTGTGTAGTAT 100 22 0.22 61 0 0 11 5 0.45 SPATA16 83893 broad.mit.edu 37 3 172643226 172643226 + Frame_Shift_Del DEL G G - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . SPATA16 NM_031955 exon7 c.1138delC p.Q380fs ATTGTTGGGGAGG 296 8 0.03 271 0 0 111 0 0 SDHAP2 0 broad.mit.edu 37 3 195412514 195412515 + RNA INS - - C rs112711528 TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . TTACAGTCCCCTG 12 4 0.33 7 1 0.1428571429 48 0 0.00 MUC4 4585 mdanderson.org 37 3 195510622 195510622 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_018406 exon2 c.C7829A p.P2610H GTGACAGGAAGAG 32 3 0.09 17 0 0 7 0 0.00 MUC4 4585 broad.mit.edu 37 3 195516898 195516898 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . MUC4 NM_018406 exon2 c.C1553A p.T518K TTTCCTGTGACAA 174 5 0.03 137 0 0 1505 10 0 0.00 PIGX 54965 mdanderson.org 37 3 196443744 196443744 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_017861 exon2 c.G128T p.C43F CCATGTGTTCTGA 97 5 0.05 87 0 0 15 0 0.00 IDUA 3425 broad.mit.edu 37 4 996204 996204 + Missense_Mutation SNP A A C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . IDUA NM_000203 exon8 c.A1120C p.T374P AACAACACCCGCC 113 39 0.35 90 29 0.3222222222 33 4 0 0.00 POLN 353497 hgsc.bcm.edu 37 4 2077181 2077181 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_181808 exon22 c.C2453A p.A818E CTACCTGCACACT 80 4 0.05 80 0 0 0 0 HTT 3064 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 3237461 3237461 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 HTT,NS,carcinoma,0,1 HTT NM_002111 exon63 c.G8741T p.R2914L CGCACCGGGCCAT 22 4 0.18 39 0 0 221 1 111 0 0.00 RASGEF1B 153020 mdanderson.org 37 4 82368726 82368726 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_152545 exon6 c.C661A p.L221I AATTGAGCCTCTC 48 3 0.06 74 0 0 5 0 0.00 SEC31A 22872 mdanderson.org 37 4 83763615 83763615 + Silent SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_001077207 exon22 c.G2646A p.P882P GGGATACGGCTGG 50 3 0.06 68 0 0 287 0 0.00 UFSP2 55325 broad.mit.edu;mdanderson.org 37 4 186324768 186324768 + Silent SNP T T C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 UFSP2,bladder,carcinoma,-2,1 UFSP2 NM_018359 exon11 c.A1203G p.G401G AACTCCTCCCCCT 82 4 0.05 93 0 0 33 1 97 0 0.00 AGXT2 64902 mdanderson.org 37 5 35035382 35035382 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_031900 exon5 c.C526A p.L176M TGGCCAGCTCATT 31 3 0.10 35 0 0 0 0 CUL9 23113 mdanderson.org 37 6 43166534 43166534 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_015089 exon12 c.G2991T p.L997L CCTCCTGTTGCTG 37 3 0.08 38 0 0 18 0 0.00 KCNQ5 56479 broad.mit.edu 37 6 73331984 73331986 + In_Frame_Del DEL GCG GCG - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 GCG GCG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . KCNQ5 NM_001160132 exon1 c.67_69del p.23_23del GGCGCAGCGGCGG 7 3 0.43 4 0 0 153 0 0 MRAP2 112609 mdanderson.org 37 6 84765083 84765083 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_138409 exon2 c.G46T p.A16S CAATCGGCATCTA 52 3 0.06 59 0 0 7 0 0.00 CDK13 8621 mdanderson.org 37 7 39991320 39991320 + Silent SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_003718 exon1 c.C1080T p.S360S CCCGAGCCCCTAC 13 2 0.15 9 0 0 44 0 0.00 ZNF733P 0 broad.mit.edu 37 7 62759066 62759067 + RNA INS - - T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . TTTCTTCTTTTTT 10 3 0.30 13 0 0 0 0 RABGEF1 27342 ucsc.edu 37 7 66270306 66270306 + Missense_Mutation SNP A A G novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic RNA-Seq none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . RABGEF1 NM_014504 exon8 c.A1000G p.N334D CAGTCTAATATCC 125 1 0.01 73 0 0 56 102 12 0.12 ZNF789 285989 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99084226 99084227 + Frame_Shift_Del DEL GT GT - novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 GT GT Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . ZNF789 NM_213603 exon5 c.392_393del p.131_131del ACATAAGTGTAAA 189 27 0.14 191 0 0 33 40 0 0.00 FAM185A 222234 broad.mit.edu 37 7 102401776 102401776 + Silent SNP T T G rs2537454 TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . FAM185A NM_001145268 exon4 c.T711G p.G237G AGATGGTTTGCTG 414 4 0.01 395 1 0.0025316456 10 14 0 0.00 DPY19L2P2 349152 hgsc.bcm.edu 37 7 102825785 102825785 + RNA SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . . . . . GTGTGTGTGTGTG 88 10 0.11 57 0 0 3 0 0.00 ZNF777 27153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149153033 149153033 + Silent SNP G G A novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_015694 exon2 c.C81T p.L27L TCGGGGGAGTCCA 112 23 0.21 98 0 0 49 19 0.39 CHPF2 54480 mdanderson.org 37 7 150932588 150932588 + Missense_Mutation SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_019015 exon2 c.C718T p.R240W CGTCTGCGGCCAC 28 3 0.11 33 0 0 46 0 0.00 ASH2L 9070 mdanderson.org 37 8 37963102 37963102 + Missense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_004674 exon1 c.G34T p.A12S CAGGAAGCGGGTG 42 3 0.07 32 0 0 78 0 0.00 SLC20A2 6575 broad.mit.edu 37 8 42329669 42329669 + Nonsense_Mutation SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . SLC20A2 NM_001257181 exon2 c.C240A p.Y80X CTCGTTGTACAGG 328 7 0.02 301 0 0 64 36 0 0.00 PUF60 22827 broad.mit.edu 37 8 144899807 144899807 + Silent SNP G G T rs202135558 bycluster;by1000genomes;alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . PUF60 NM_078480 exon9 c.C963A p.A321A AGCAGCGGCAGGT 69 3 0.04 60 0 0 26 623 0 0.00 SLC44A1 23446 broad.mit.edu 37 9 108118213 108118214 + Translation_Start_Site DEL TG TG - rs149701367 bycluster;by1000genomes;alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . SLC44A1 . . . . TGTGTATGTGTGT 6 2 0.33 4 0 0 61 0 0 LAMC3 10319 mdanderson.org 37 9 133951288 133951288 + Missense_Mutation SNP G G T rs375541717 alternate_allele TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_006059 exon21 c.G3565T p.A1189S AGCTACGCGCTTC 57 3 0.05 42 0 0 101 0 0.00 LAMC3 10319 mdanderson.org 37 9 133952608 133952608 + Missense_Mutation SNP A A G novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_006059 exon22 c.A3664G p.R1222G GCACTGAGGACGG 49 3 0.06 50 0 0 91 0 0.00 ABCA2 20 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 9 139907669 139907669 + Missense_Mutation SNP C C T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_212533 exon30 c.G4742A p.G1581D AGCGAGCCGTTGG 34 6 0.18 40 0 0 22 5 0.23 DPP7 29952 broad.mit.edu 37 9 140006326 140006326 + Splice_Site SNP A A C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . DPP7 NM_013379 exon10 c.T1206G p.G402G CTTACCACCCCCC 75 14 0.19 67 8 0.1194029851 22 154 6 0.04 HSD17B10 3028 mdanderson.org 37 X 53459354 53459354 + Silent SNP G G T novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . . NM_004493 exon3 c.C198A p.T66T CTCAGAGGTCACC 35 4 0.11 20 0 0 761 0 0.00 SPIN2A 54466 broad.mit.edu 37 X 57162583 57162583 + Missense_Mutation SNP T T C novel TCGA-SN-A6IS-01A-11D-A435-10 TCGA-SN-A6IS-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ca87b2ae-6a7b-45a2-af22-eaee181811e4 80864d22-97cf-4c45-89b2-fea8dc595170 . SPIN2A NM_019003 exon2 c.A448G p.M150V AGACCATCCCCCT 443 5 0.01 351 1 0.0028490028 7 0 0