Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CSMD2 114784 mdanderson.org 37 1 34276465 34276465 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_052896 exon10 c.C1205A p.A402D ATGCGGGCTGCAG 49 3 0.06 45 0 0 4 0 0.00 SUSD4 55061 mdanderson.org 37 1 223396687 223396687 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_017982 exon8 c.C1348A p.Q450K TCTCTTGGCACCT 39 3 0.08 45 0 0 7 0 0.00 WDR26 80232 broad.mit.edu 37 1 224581650 224581651 + Frame_Shift_Del DEL GT GT - novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 GT GT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . WDR26 NM_025160 exon13 c.1839_1840del p.613_614del CTGTACGTGTGTG 266 8 0.03 224 0 0 104 247 0 0.00 OR6F1 343169 mdanderson.org 37 1 247875953 247875953 + Nonsense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001005286 exon1 c.C105A p.Y35X GAGGATGTACATC 41 3 0.07 43 0 0 0 0 TUBB8 347688 broad.mit.edu 37 10 93106 93106 + Missense_Mutation SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . TUBB8 NM_177987 exon4 c.C1226T p.T409I GCCTCGGTGAATT 52 3 0.06 85 0 0 62 63 0 0.00 FAM208B 54906 mdanderson.org 37 10 5790488 5790488 + Nonsense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_017782 exon15 c.G5104T p.E1702X GAAGCTGAGTTAC 30 3 0.10 38 1 0.0263157895 68 0 0.00 SKIDA1 387640 mdanderson.org 37 10 21806056 21806056 + Silent SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_207371 exon4 c.C696T p.A232A AGCAGCGGCGGCG 18 3 0.17 15 0 0 0 0 ZNF438 220929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 31137859 31137859 + Missense_Mutation SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_182755 exon7 c.G1475A p.S492N ACGGAGCTGGGCT 239 35 0.15 246 0 0 32 1 0.03 MMRN2 79812 mdanderson.org 37 10 88704996 88704996 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_024756 exon4 c.C430A p.P144T CACCAGGATCTGC 46 3 0.07 66 0 0 19 0 0.00 ANKRD1 27063 mdanderson.org 37 10 92675380 92675380 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_014391 exon8 c.C769A p.H257N CATCATGCAACGG 53 3 0.06 74 0 0 0 0 HSPA12A 259217 bcgsc.ca;mdanderson.org 37 10 118458220 118458220 + Missense_Mutation SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . HSPA12A NM_025015 exon5 c.G472A p.A158T CATTTGCTGCCGT 72 5 0.07 80 0 0 81 8 0 0.00 GPR26 2849 mdanderson.org 37 10 125426014 125426014 + Silent SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_153442 exon1 c.C91T p.L31L TGCCTGCTGCACA 37 3 0.08 36 0 0 0 0 CTBP2 1488 mdanderson.org 37 10 126715930 126715930 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f CTBP2,caecum,carcinoma,0,1 CTBP2 NM_022802 exon1 c.C399A p.S133R CGGCCGGCTGACT 30 3 0.10 53 0 0 0 1 1 0 0.00 DHX32 55760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 127526837 127526837 + Silent SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_018180 exon10 c.C2001T p.F667F TTTATGGAAGAGG 72 28 0.39 71 0 0 79 39 0.49 MUC2 4583 mdanderson.org 37 11 1078504 1078504 + Missense_Mutation SNP C C G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_002457 exon6 c.C712G p.Q238E GACTGTCAGGACC 24 3 0.13 20 0 0 0 0 TSG101 7251 broad.mit.edu 37 11 18505466 18505466 + Missense_Mutation SNP T T C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f TSG101,NS,carcinoma,0,1 TSG101 NM_006292 exon8 c.A794G p.K265R TGACCCTTTTTCA 120 3 0.03 105 2 0.019047619 43 1 581 0 0.00 FEN1 2237 mdanderson.org 37 11 61563042 61563042 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_004111 exon2 c.G209T p.R70L TCTACCGCACCAT 41 3 0.07 55 0 0 221 0 0.00 TBX10 347853 ucsc.edu;bcgsc.ca 37 11 67399115 67399115 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . TBX10 NM_005995 exon8 c.C1119A p.P373P CACAGTGGGGGAC 25 4 0.16 22 0 0 25 0 0 INPPL1 3636 mdanderson.org 37 11 71942580 71942580 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001567 exon13 c.G1536T p.V512V GGCAGTGCTGGTC 42 3 0.07 55 0 0 160 0 0.00 SIDT2 51092 bcgsc.ca 37 11 117064645 117064647 + In_Frame_Del DEL TCT TCT - novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 TCT TCT Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . SIDT2 NM_001040455 exon24 c.2288_2290del p.763_764del TCGCGCTCTTCTT 33 5 0.15 100 0 0 82 82 0 0.00 NCAPD3 23310 mdanderson.org 37 11 134063930 134063930 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_015261 exon15 c.C1805A p.S602Y GTAAGAGACTGGA 47 3 0.06 84 0 0 32 0 0.00 PLCZ1 89869 mdanderson.org 37 12 18837085 18837085 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_033123 exon14 c.C1720A p.P574T GAAGTGGCAAAGT 128 5 0.04 79 0 0 0 0 CAPZA3 93661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 18891950 18891950 + Missense_Mutation SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_033328 exon1 c.G748A p.E250K TCCAATGAAGCCC 58 18 0.31 41 0 0 0 0 KIF21A 55605 broad.mit.edu 37 12 39735383 39735383 + Silent SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f KIF21A,NS,carcinoma,0,2 KIF21A NM_001173464 exon14 c.G1845A p.E615E CTCCTCCTCTTCT 144 3 0.02 128 0 0 238 2 27 0 0.00 ESYT1 23344 broad.mit.edu 37 12 56532024 56532024 + Missense_Mutation SNP A A C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . ESYT1 NM_001184796 exon21 c.A2335C p.T779P CGTCTCACCCCCC 132 9 0.07 120 1 0.0083333333 84 144 6 0.04 KIAA1033 23325 mdanderson.org 37 12 105505042 105505042 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_015275 exon2 c.G201T p.K67N ATTAAAGGTTTGA 46 3 0.07 43 0 0 28 0 0.00 TMEM132C 92293 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 129190461 129190461 + Missense_Mutation SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001136103 exon9 c.G2948A p.S983N TGGAGAGCATGGG 86 7 0.08 88 0 0 31 2 0.06 TMEM132D 121256 broad.mit.edu 37 12 130184606 130184606 + Silent SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f TMEM132D,NS,carcinoma,0,1 TMEM132D NM_133448 exon2 c.C717T p.C239C CCTGACGCAGTCC 86 4 0.05 110 0 0 299 1 10 3 0.30 TPTE2 93492 bcgsc.ca 37 13 20056686 20056686 + Missense_Mutation SNP T T C rs201542496 TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . TPTE2 NM_199254 exon5 c.A121G p.M41V CTAACATACTTTA 459 15 0.03 575 6 0.0104347826 225 3 0 0.00 CBLN3 643866 broad.mit.edu 37 14 24898130 24898130 + Missense_Mutation SNP T T C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . CBLN3 NM_001039771 exon1 c.A131G p.E44G AGGCACTCCCCCT 140 5 0.04 134 0 0 21 3 0 0.00 TXNDC16 57544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 52978069 52978069 + Missense_Mutation SNP A A T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_020784 exon9 c.T645A p.H215Q TTTACAATGAAAA 249 80 0.32 275 0 0 5 2 0.40 TTC7B 145567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 91252656 91252656 + Silent SNP A A G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001010854 exon2 c.T138C p.L46L GAGGAGAAGCTCT 66 12 0.18 50 0 0 39 6 0.15 JAG2 3714 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 14 105609508 105609508 + Splice_Site SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_002226 exon27 c.3242-1G>A . GCAGACCTGGGGA 23 11 0.48 14 0 0 42 33 0.79 FAN1 22909 broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 31197594 31197594 + Missense_Mutation SNP A A G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . FAN1 NM_001146095 exon2 c.A728G p.K243R GCCAAAAGGCTAC 131 5 0.04 135 0 0 77 73 0 0.00 MAN2C1 4123 broad.mit.edu;mdanderson.org 37 15 75650586 75650586 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . MAN2C1 NM_001256494 exon21 c.C2554A p.R852R TAGGTCGCTGCAG 116 5 0.04 104 0 0 76 57 0 0.00 MESDC1 59274 mdanderson.org 37 15 81295326 81295326 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_022566 exon1 c.G714T p.A238A GGTGGCGCCCAGT 11 2 0.18 11 0 0 52 0 0.00 MEX3B 84206 mdanderson.org 37 15 82338001 82338001 + Missense_Mutation SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_032246 exon1 c.G46A p.G16S CGCCGCCGCCGCT 21 3 0.14 25 0 0 15 0 0.00 ATF7IP2 80063 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 10534303 10534303 + Missense_Mutation SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_024997 exon6 c.G1178A p.S393N TATCCAGTAATGG 344 24 0.07 348 0 0 5 1 0.20 NOMO1 23420 bcgsc.ca 37 16 14973920 14973920 + Missense_Mutation SNP G G C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . NOMO1 NM_014287 exon24 c.G2806C p.E936Q CGGTTTGAGCCAT 1181 300 0.25 1119 5 0.0044682752 60 103 20 0.19 SH2B1 25970 broad.mit.edu 37 16 28877475 28877475 + Silent SNP A A C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . SH2B1 NM_001145796 exon2 c.A60C p.P20P GCCCCCACCCCCG 55 15 0.27 51 3 0.0588235294 160 12 0 0.00 CORO1A 11151 mdanderson.org 37 16 30198195 30198195 + Missense_Mutation SNP T T C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001193333 exon5 c.T380C p.L127P TCACCCTGGAGGG 42 3 0.07 39 1 0.0256410256 166 0 0.00 TAF1C 9013 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 84212696 84212698 + In_Frame_Del DEL TGG TGG - novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 TGG TGG Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . TAF1C NM_005679 exon14 c.2460_2462del p.820_821del GTAGCTTGGCCAT 38 11 0.29 49 0 0 60 251 93 0.37 CPNE7 27132 mdanderson.org 37 16 89655121 89655121 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_014427 exon12 c.G1191T p.R397R CCCGCGGAACAGC 39 3 0.08 38 0 0 0 0 RTN4RL1 146760 mdanderson.org 37 17 1840603 1840603 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_178568 exon2 c.C513A p.D171E GACCAGGTCCACG 40 4 0.10 41 0 0 19 1 0.05 TVP23C 0 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic RNA-Seq none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA 171 21 0.12 246 8 0.0325203252 64 32 0.50 TNRC6C 57690 mdanderson.org 37 17 76047438 76047438 + Silent SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_018996 exon4 c.C2295T p.T765T CACCACCACTACC 42 3 0.07 58 0 0 52 0 0.00 AZI1 22994 broad.mit.edu 37 17 79174197 79174197 + Silent SNP G G T rs138379046 alternate_allele TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . AZI1 NM_014984 exon8 c.C838A p.R280R GGTGCCGGTACCA 122 4 0.03 109 0 0 145 91 0 0.00 FOXK2 3607 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 80478070 80478070 + Missense_Mutation SNP G G C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_004514 exon1 c.G306C p.Q102H CGCGCAGCCCAGG 130 29 0.22 45 0 0 31 5 0.16 MEX3C 51320 mdanderson.org 37 18 48703101 48703101 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_016626 exon2 c.C1600A p.R534S CTCTGCGCTGAGT 55 3 0.05 113 0 0 236 0 0.00 DSEL 92126 mdanderson.org 37 18 65178556 65178556 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_032160 exon2 c.C3320A p.S1107Y AAGAGGGACACTG 8 2 0.25 28 0 0 4 0 0.00 MIER2 54531 mdanderson.org 37 19 308655 308655 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_017550 exon12 c.C1120A p.Q374K GGTCCTGGTCTGC 47 3 0.06 49 0 0 276 0 0.00 ZNF812 729648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 9801772 9801772 + Missense_Mutation SNP A A T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001199814 exon6 c.T407A p.L136H TTGGAAAGTTCCT 141 48 0.34 96 0 0 0 0 CACNA1A 773 bcgsc.ca 37 19 13443726 13443726 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . CACNA1A NM_001127222 exon9 c.C1212A p.L404L CTCGGCGAGGATC 48 4 0.08 41 0 0 715 1 0 0.00 PODNL1 79883 mdanderson.org 37 19 14044048 14044048 + Missense_Mutation SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_024825 exon8 c.C1009T p.R337W GGCCCCGCAGCGG 10 2 0.20 16 0 0 3 0 0.00 SUGP2 10147 broad.mit.edu 37 19 19105286 19105286 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . SUGP2 NM_014884 exon10 c.C3138A p.P1046P TTCCGAGGGGGTT 163 4 0.02 189 0 0 107 111 0 0.00 PAFAH1B3 5050 mdanderson.org 37 19 42806398 42806398 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_002573 exon1 c.C64A p.R22S TCCAGCGCCCGTC 50 3 0.06 62 0 0 435 3 0.01 CLASRP 11129 mdanderson.org 37 19 45567750 45567750 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_007056 exon13 c.G1271T p.R424L GGTCCCGCTCCCG 16 3 0.19 21 0 0 131 0 0.00 NKPD1 284353 mdanderson.org 37 19 45661943 45661943 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_198478 exon2 c.C507A p.G169G GAAGGAGCCACAG 19 2 0.11 19 0 0 5 0 0.00 KLK10 5655 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 51518067 51518067 + Missense_Mutation SNP G G T rs370110864 alternate_allele TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f KLK10,NS,carcinoma,+1,1 KLK10 NM_145888 exon6 c.C820A p.R274S TGGAGCGTATGAC 64 4 0.06 73 0 0 1 1 5 0 0.00 LILRB3 11025 mdanderson.org 37 19 54724044 54724044 + Silent SNP T T A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_006864 exon7 c.A1290T p.T430T CGGCCCTGTGGGT 42 3 0.07 40 0 0 3 0 0.00 RNASEH1 246243 bcgsc.ca;mdanderson.org 37 2 3605788 3605788 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . RNASEH1 NM_002936 exon1 c.C63A p.G21G GCGAGAGCCGCGG 91 5 0.05 55 0 0 27 201 0 0.00 WDR35 57539 ucsc.edu 37 2 20113319 20113319 + Silent SNP T T C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . WDR35 NM_001006657 exon28 c.A3546G p.X1182X ATTCCTTTATCCC 203 1 0.00 118 0 0 92 24 7 0.29 DPYSL5 56896 mdanderson.org 37 2 27150268 27150268 + Missense_Mutation SNP G G T rs144366814 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_020134 exon4 c.G568T p.V190F GCCCGCGTCCATG 129 5 0.04 91 0 0 120 0 0.00 HK2 3099 broad.mit.edu 37 2 75107420 75107420 + Missense_Mutation SNP C C T rs148796379 bycluster;byfrequency TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . HK2 NM_000189 exon10 c.C1294T p.R432W ACCGTGCGGCGGC 139 4 0.03 93 0 0 85 41 1 0.02 LINC00152 0 broad.mit.edu 37 2 87778085 87778086 + RNA INS - - A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . . . . . TATCTATAAAAAA 8 2 0.25 6 0 0 0 0 DPP4 1803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 162865128 162865128 + Missense_Mutation SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001935 exon22 c.G1931A p.S644N ACGCCACTTCCCG 123 18 0.15 82 0 0 3 0 0.00 DUSP19 142679 mdanderson.org 37 2 183960356 183960356 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_080876 exon4 c.G624T p.K208N CAATAAGTGTGAC 89 4 0.04 77 0 0 16 0 0.00 TTLL4 9654 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 219603651 219603651 + Missense_Mutation SNP C C T rs200872563 by1000genomes TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_014640 exon3 c.C1252T p.R418C ACCAAGCGTATCA 147 6 0.04 99 0 0 0 149 10 0.07 CUL3 8452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 225370731 225370731 + Missense_Mutation SNP C C A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001257198 exon8 c.G1166T p.R389M GGAGACCTGGAGT 329 138 0.42 241 0 0 192 89 0.46 IQCA1 79781 broad.mit.edu 37 2 237327853 237327855 + In_Frame_Del DEL TTC TTC - novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 TTC TTC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . IQCA1 NM_001270585 exon8 c.1092_1094del p.364_365del TCCTTTTTCTTCT 785 7 0.01 619 0 0 170 4 0 0.00 GATSL3 652968 mdanderson.org 37 22 30685382 30685382 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001037666 exon1 c.C105A p.R35R GCTGCGGCGGGGC 36 3 0.08 20 0 0 35 0 0.00 ELFN2 114794 mdanderson.org 37 22 37770851 37770851 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_052906 exon3 c.C724A p.Q242K TGGCCTGGAGTAC 43 3 0.07 30 0 0 8 0 0.00 FBLN1 2192 hgsc.bcm.edu;broad.mit.edu 37 22 45928977 45928977 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_006487 exon6 c.G579T p.T193T AGACACGGGTGAC 113 6 0.05 108 0 0 1125 0 0.00 TUBGCP6 85378 broad.mit.edu 37 22 50656423 50656423 + Silent SNP A A C novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . TUBGCP6 NM_020461 exon24 c.T5292G p.G1764G CTCTGCACCCCGC 44 13 0.30 55 8 0.1454545455 132 72 13 0.18 TATDN2 9797 mdanderson.org 37 3 10318068 10318068 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_014760 exon5 c.G1857T p.L619L GCAGCTGGCTGTG 49 3 0.06 48 0 0 78 0 0.00 ZNF619 285267 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 40519494 40519494 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001145083 exon2 c.G46T p.A16S GTTCCAGGTGAGC 90 5 0.06 106 0 0 0 0 ABTB1 80325 mdanderson.org 37 3 127396684 127396684 + Nonsense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_172027 exon10 c.G1027T p.E343X CACACTGAGGTGG 45 3 0.07 34 0 0 72 0 0.00 DNAJC13 23317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 132224196 132224196 + Missense_Mutation SNP C C G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_015268 exon42 c.C4935G p.N1645K ATGGAACAATTCT 534 219 0.41 580 0 0 133 56 0.42 PRR23A 729627 broad.mit.edu 37 3 138724758 138724758 + Nonsense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f PRR23A,NS,carcinoma,+1,1 PRR23A NM_001134659 exon1 c.C353A p.S118X GCAGACGAGTCGT 215 5 0.02 219 0 0 35 1 29 0 0.00 NAALADL2 254827 mdanderson.org 37 3 175473106 175473106 + Missense_Mutation SNP C C A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_207015 exon13 c.C2089A p.P697T AATGATCCCAAGG 63 4 0.06 76 0 0 0 0 FGFR3 2261 mdanderson.org 37 4 1803151 1803151 + Missense_Mutation SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_022965 exon5 c.C503T p.A168V TGCCGGCCGCCAA 20 3 0.15 60 0 0 438 0 0.00 QRFPR 84109 broad.mit.edu 37 4 122261656 122261656 + Silent SNP A A G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . QRFPR NM_198179 exon2 c.T450C p.P150P TTTAAAAGGATGC 79 3 0.04 121 0 0 65 3 0 0.00 FBN2 2201 broad.mit.edu 37 5 127648441 127648441 + Silent SNP A A G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . FBN2 NM_001999 exon37 c.T4764C p.D1588D ACTCCCATCTCCT 105 3 0.03 150 0 0 858 0 0 PURA 5813 mdanderson.org 37 5 139494333 139494333 + Silent SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f PURA,NS,carcinoma,+1,1 PURA NM_005859 exon1 c.G567A p.A189A CATTGCGCTGCCC 35 3 0.09 64 0 0 1 1 35 0 0.00 SLC4A9 83697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 139741434 139741434 + Missense_Mutation SNP C C A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001258428 exon4 c.C619A p.P207T GAAGCCCCCCTGA 167 22 0.13 288 0 0 0 0 GALNT10 55568 mdanderson.org 37 5 153709200 153709200 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_198321 exon4 c.G470T p.G157V ACGAGGGCTGGTC 80 4 0.05 129 0 0 13 0 0.00 RAB24 53917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176729427 176729427 + Missense_Mutation SNP T T G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001031677 exon5 c.A404C p.D135A TGGAAGTCCACAC 57 4 0.07 78 0 0 46 6 0.13 MGAT4B 11282 ucsc.edu 37 5 179226299 179226299 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . MGAT4B NM_054013 exon9 c.C1098A p.D366E CTGCCGGTCACAG 42 4 0.10 60 0 0 41 216 0 0.00 DPCR1 135656 hgsc.bcm.edu 37 6 30917807 30917807 + Silent SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_080870 exon2 c.C1566T p.H522H AGAACACGGAGAA 74 6 0.08 88 0 0 0 0 LY6G5B 58496 broad.mit.edu 37 6 31639910 31639910 + Missense_Mutation SNP A A G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . LY6G5B NM_021221 exon3 c.A457G p.T153A GCTGGGACGGAGC 176 5 0.03 203 1 0.0049261084 8 69 0 0.00 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 66094357 66094357 + Missense_Mutation SNP T T A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001142801 exon8 c.A1221T p.K407N AATTGCTTTCTCA 85 30 0.35 81 0 0 0 0 TMEM200A 114801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 130762743 130762743 + Silent SNP G G T rs141571184 alternate_allele TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_001258277 exon3 c.G1176T p.S392S GCTCTCGTCACAC 63 20 0.32 65 0 0 4 2 0.50 PMS2CL 0 broad.mit.edu 37 7 6786205 6786206 + RNA INS - - T rs370173844 TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . . . . . TAGACTGTTTTTT 9 3 0.33 7 0 0 0 0 PLEKHA8 84725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 7 30129789 30129789 + Missense_Mutation SNP T T G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_032639 exon13 c.T1321G p.X441G AACACTTGACACC 332 38 0.11 249 0 0 2 1 0.50 GTF2IRD2P1 0 broad.mit.edu;bcgsc.ca 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . . . . . CCGGGGTCCTTGA 172 8 0.05 129 2 0.015503876 1 0 0.00 ARHGEF5 7984 broad.mit.edu 37 7 144062343 144062343 + Missense_Mutation SNP A A G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . ARHGEF5 NM_005435 exon2 c.A2581G p.R861G AGGGGGAGGAGCA 567 6 0.01 563 2 0.0035523979 73 39 0 0.00 DLC1 10395 broad.mit.edu 37 8 12957624 12957624 + Missense_Mutation SNP C C G novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f DLC1,bladder,carcinoma,0,3 DLC1 NM_182643 exon9 c.G2222C p.S741T CTGCTGCTGGTCT 89 4 0.04 76 0 0 411 3 18 0 0.00 CA8 767 broad.mit.edu 37 8 61144876 61144876 + Silent SNP C C T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . CA8 NM_004056 exon4 c.G480A p.P160P TCCGTGCGGCTTC 161 4 0.02 107 0 0 31 8 0 0.00 PTPRD 5789 mdanderson.org 37 9 8376014 8376014 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_002839 exon39 c.C4583A p.P1528H GGTGTAGGGTGTT 119 5 0.04 100 0 0 1 0 0.00 ALDH1A1 216 mdanderson.org 37 9 75543822 75543822 + Missense_Mutation SNP C C T rs149236405 TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_000689 exon4 c.G428A p.R143H ATTGTACGGCCCT 91 4 0.04 121 1 0.0082644628 0 15 0 0.00 PHF2 5253 broad.mit.edu 37 9 96408040 96408040 + Silent SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . PHF2 NM_005392 exon4 c.G429T p.T143T CCCCACGTTCTAT 57 3 0.05 79 0 0 113 69 1 0.01 CCDC180 0 mdanderson.org 37 9 100075592 100075592 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_020893 exon5 c.G556T p.A186S GCTCTGGCCAGCT 39 3 0.08 70 0 0 3 0 0.00 NUP188 23511 mdanderson.org 37 9 131764184 131764184 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_015354 exon36 c.G4066T p.A1356S GCTGGAGCTGGCA 43 3 0.07 87 0 0 139 1 0.01 MED27 9442 bcgsc.ca 37 9 134814839 134814839 + Missense_Mutation SNP G G A novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . MED27 NM_001253881 exon4 c.C502T p.R168C CAATGCGGCTGAT 43 4 0.09 52 0 0 37 24 0 0.00 COL5A1 1289 mdanderson.org 37 9 137696858 137696858 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . NM_000093 exon40 c.G3152T p.G1051V AAGATGGCCCTCC 67 4 0.06 88 0 0 170 0 0.00 FAM157B 0 broad.mit.edu 37 9 141124391 141124392 + RNA DEL TG TG - rs367820400 alternate_allele TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . . . . . . GTGTTTTGTTTTT 13 3 0.23 21 0 0 0 0 CDKL5 6792 broad.mit.edu 37 X 18622108 18622108 + Missense_Mutation SNP G G T rs189400843 bycluster;by1000genomes;alternate_allele TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . CDKL5 NM_003159 exon12 c.G1064T p.R355L TGCCCCGGGCTGA 257 4 0.02 222 1 0.0045045045 124 19 0 0.00 F8 2157 broad.mit.edu 37 X 154133089 154133089 + Missense_Mutation SNP G G T novel TCGA-SO-A8JP-01A-11D-A435-10 TCGA-SO-A8JP-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d8f0ba93-fcd8-4209-871e-8c7c2a4c0103 e5745f56-83f7-4400-a405-ca157b25933f . F8 NM_000132 exon16 c.C5583A p.D1861E TACCAGGTCAACA 122 4 0.03 98 0 0 646 16 0 0.00