Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SLC25A34 284723 mdanderson.org 37 1 16062988 16062988 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_207348 exon1 c.C8T p.T3M TGGAGACGGTGCC 22 3 0.14 30 0 0 0 0 SZRD1 26099 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 16719757 16719757 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . SZRD1 NM_001114600 exon3 c.G136T p.V46L CCCATTGTGATTC 158 7 0.04 113 0 0 1 113 0 0.00 FAM43B 163933 mdanderson.org 37 1 20880251 20880251 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_207334 exon1 c.G785T p.S262I TCAGCAGCATCCA 12 3 0.25 9 0 0 0 0 KIF17 57576 mdanderson.org 37 1 20996952 20996952 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_020816 exon13 c.C2755A p.R919S TTTTGCGGGCTGG 56 3 0.05 60 0 0 40 0 0.00 ZBTB8OS 339487 broad.mit.edu 37 1 33099658 33099658 + Silent SNP T T C novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . ZBTB8OS NM_178547 exon3 c.A174G p.G58G AGTATCTCCCCAT 171 3 0.02 177 0 0 9 216 0 0.00 EVA1B 55194 mdanderson.org 37 1 36788239 36788239 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_018166 exon3 c.C155A p.S52X GCCCACGAGATGC 43 3 0.07 21 0 0 68 0 0.00 SZT2 23334 bcgsc.ca;mdanderson.org 37 1 43906994 43906994 + Missense_Mutation SNP G G A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . SZT2 NM_015284 exon52 c.G7283A p.R2428Q GTGTTCGGACTCC 93 5 0.05 89 0 0 383 48 0 0.00 CHI3L1 1116 bcgsc.ca 37 1 203148983 203148983 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . CHI3L1 NM_001276 exon9 c.C917A p.A306D ACTGTGGCTCCGC 86 5 0.06 88 1 0.0113636364 51 1 0 0.00 TAF5L 27097 broad.mit.edu 37 1 229737976 229737976 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . TAF5L NM_001025247 exon4 c.G938A p.R313H TGGATGCGGGACA 222 5 0.02 194 1 0.0051546392 76 46 0 0.00 EDARADD 128178 mdanderson.org 37 1 236631562 236631562 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_145861 exon5 c.G251T p.G84V GCACTGGAGATCC 93 5 0.05 82 0 0 0 0 EPC1 80314 broad.mit.edu 37 10 32575641 32575641 + Silent SNP G G T rs143299306 alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . EPC1 NM_001272004 exon9 c.C1372A p.R458R CAACCCGTCTTCG 120 4 0.03 121 1 0.0082644628 74 28 0 0.00 LOC100129055 0 broad.mit.edu 37 10 38468803 38468803 + RNA DEL T T - novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . GTGACCTTTTTTT 6 4 0.67 7 0 0 0 0 FLJ31813 0 broad.mit.edu 37 10 51826259 51826259 + RNA DEL A A - novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . AAAAGCAAAAAAA 8 3 0.38 6 0 0 0 0 CCAR1 55749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70525822 70525822 + Missense_Mutation SNP G G C novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 CCAR1,NS,carcinoma,0,1 CCAR1 NM_018237 exon17 c.G2284C p.E762Q AATAAAGAACATT 86 7 0.08 89 0 0 0 1 128 37 0.29 PIPSL 0 broad.mit.edu 37 10 95718361 95718361 + RNA DEL T T - novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . CTTTTCTTTTCTT 11 4 0.36 14 0 0 0 0 KRTAP5-5 439915 mdanderson.org 37 11 1651203 1651203 + Missense_Mutation SNP T T C novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001001480 exon1 c.T133C p.C45R GGAGGCTGTGGGG 51 6 0.12 50 0 0 0 0 BDNF-AS 497258 hgsc.bcm.edu 37 11 27681201 27681201 + RNA SNP C C T rs182322619 TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . TGCGCGCGCGCGT 94 8 0.09 114 0 0 0 0 DEPDC7 91614 broad.mit.edu 37 11 33047234 33047234 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . DEPDC7 NM_001077242 exon2 c.G103T p.A35S TTTGGAGCCACGT 182 5 0.03 184 0 0 94 30 0 0.00 SLC35C1 55343 mdanderson.org 37 11 45827629 45827629 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_018389 exon1 c.G277T p.A93S CTCAGCGCTCTGG 52 3 0.06 36 0 0 13 0 0.00 C11orf82 220042 hgsc.bcm.edu;mdanderson.org 37 11 82639955 82639955 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_145018 exon4 c.G250T p.G84C TTTTTTGGTCTTA 82 4 0.05 81 0 0 13 0 0.00 PGR 5241 mdanderson.org 37 11 100998763 100998763 + Missense_Mutation SNP A A G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_000926 exon1 c.T1039C p.C347R AGGCACAGGGTGA 30 4 0.13 25 0 0 0 0 DDX10 1662 broad.mit.edu 37 11 108712092 108712092 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . DDX10 NM_004398 exon15 c.G2136T p.E712D TGCTGAGGAAGAT 239 6 0.03 227 0 0 70 78 0 0.00 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25398285 25398285 + Missense_Mutation SNP C C G rs121913530 bycluster TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 KRAS_ENST00000256078,NS,adenocarcinoma,+1,25136 KRAS_ENST00000256078 NM_004985 exon2 c.G34C p.G12R CGCCACCAGCTCC 336 122 0.36 210 0 0 1 25136 22 13 0.59 TIMELESS 8914 broad.mit.edu 37 12 56827600 56827600 + Missense_Mutation SNP T T G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . TIMELESS NM_003920 exon3 c.A208C p.T70P GCTGGGTGAGGAT 78 22 0.28 62 12 0.1935483871 107 39 1 0.03 NDUFA4L2 56901 mdanderson.org 37 12 57629360 57629360 + Silent SNP G G T rs139105980 alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_020142 exon5 c.C250A p.R84R CTGGCCGGTCCTT 55 3 0.05 48 0 0 25 0 0.00 ACAD10 80724 mdanderson.org 37 12 112182447 112182447 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001136538 exon14 c.G1808T p.G603V GCTTAGGGCAAGC 47 3 0.06 29 0 0 20 0 0.00 RASAL1 8437 mdanderson.org 37 12 113565955 113565955 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001193520 exon4 c.C151A p.P51T AGAAGGGGCCCAG 43 3 0.07 35 0 0 1 0 0.00 NCOR2 9612 mdanderson.org 37 12 124831293 124831293 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_006312 exon33 c.C4176A p.D1392E GGTCAGGTCCCGT 39 3 0.08 45 0 0 11 0 0.00 GUCY1B2 2974 mdanderson.org 37 13 51600936 51600936 + RNA SNP G G A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . AGGAAAGCTGCCT 47 3 0.06 50 0 0 0 0 METTL3 56339 mdanderson.org 37 14 21971825 21971825 + Silent SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_019852 exon2 c.C300A p.I100I AAGACAGATGGAC 118 5 0.04 107 0 0 61 0 0.00 DHRS4L2 317749 mdanderson.org 37 14 24458223 24458223 + Missense_Mutation SNP A A G rs139671977 bycluster;byfrequency TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 DHRS4L2,trunk,malignant_melanoma,0,1 DHRS4L2 NM_198083 exon1 c.A67G p.R23G AGCTCCAGGATGA 43 5 0.12 47 1 0.0212765957 0 0 1 9 0 0.00 DDHD1 0 broad.mit.edu 37 14 53522376 53522376 + Splice_Site SNP A A G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . DDHD1 NM_001160147 exon12 c.2266+2T>C . GAAATTACCTAAT 68 8 0.12 57 0 0 202 0 0 YLPM1 56252 hgsc.bcm.edu;mdanderson.org 37 14 75265422 75265422 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_019589 exon5 c.G3422T p.S1141I CTGGGAGCAGGGA 123 5 0.04 101 0 0 23 0 0.00 NRXN3 9369 hgsc.bcm.edu 37 14 79746680 79746680 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_138970 exon1 c.G46T p.A16S CGGCCGGCCTGGA 84 4 0.05 66 0 0 0 0 . 0 bcgsc.ca 37 15 23407031 23407031 + Missense_Mutation SNP T T C rs376343793 TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . TCCTGCTTCCACA 274 17 0.06 247 6 0.024291498 0 0 KIF7 374654 mdanderson.org 37 15 90174728 90174728 + Nonsense_Mutation SNP C C A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_198525 exon15 c.G3109T p.E1037X GTACCTCGGGGGA 33 3 0.09 45 1 0.0222222222 50 0 0.00 HMOX2 3163 hgsc.bcm.edu;mdanderson.org 37 16 4555575 4555575 + Missense_Mutation SNP A A G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 HMOX2,colon,carcinoma,-1,1 HMOX2 NM_001127205 exon2 c.A50G p.K17R AAAAAAAGAACTC 44 3 0.07 41 1 0.0243902439 -1 1 159 0 0.00 ARHGAP17 55114 mdanderson.org 37 16 24958877 24958877 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_018054 exon14 c.C1167A p.S389R CACATCGCTGGTC 43 3 0.07 53 0 0 33 0 0.00 CES3 23491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 67006271 67006271 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_024922 exon11 c.C1304T p.P435L GAAGCCCTGTCTT 154 21 0.14 182 0 0 8 2 0.25 KIAA0513 9764 mdanderson.org 37 16 85101005 85101005 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_014732 exon2 c.G328T p.G110W TCTGGAGGGTAAG 20 2 0.10 11 0 0 31 0 0.00 CCDC144B 0 broad.mit.edu 37 17 18498258 18498258 + RNA DEL T T - novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . CCDC144B . . . . TCTCCATTTTTTT 320 8 0.03 274 0 0 106 0 0 GRB7 2886 mdanderson.org 37 17 37903138 37903138 + Silent SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001242442 exon15 c.G1656T p.R552R CACGCGGGTGGCC 17 3 0.18 18 0 0 97 0 0.00 IGFBP4 3487 mdanderson.org 37 17 38600240 38600240 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001552 exon1 c.G253T p.G85W CCCCGAGGGGTGG 11 2 0.18 17 0 0 159 0 0.00 CDC27 996 hgsc.bcm.edu 37 17 45216150 45216150 + Silent SNP T T C novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 CDC27_ENST00000531206,NS,carcinoma,0,2 CDC27_ENST00000531206 NM_001114091 exon13 c.A1677G p.S559S CAGAACTGAAAGA 79 5 0.06 71 1 0.014084507 0 2 285 0 0.00 PHOSPHO1 162466 mdanderson.org 37 17 47301674 47301674 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001143804 exon3 c.C813A p.S271R CACCACGCTGGCG 18 2 0.11 25 0 0 1 0 0.00 SLC39A11 201266 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 70645032 70645032 + Missense_Mutation SNP G G C rs61736066 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001159770 exon9 c.C860G p.A287G GGCTCAGCCAGCA 61 6 0.10 68 0 0 23 5 0.22 MYOM1 8736 mdanderson.org 37 18 3083876 3083876 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_003803 exon33 c.C4395A p.D1465E TTTCAGGTCTGTA 74 4 0.05 49 0 0 0 0 ZFR2 23217 mdanderson.org 37 19 3806039 3806039 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_015174 exon19 c.C2728A p.R910S GGAAGCGGGCCCC 50 3 0.06 42 0 0 0 0 PNPLA6 10908 mdanderson.org 37 19 7615966 7615966 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001166111 exon19 c.G2184T p.L728F CACCTTGGGTCAC 50 4 0.08 49 0 0 60 0 0.00 MUC16 94025 broad.mit.edu 37 19 9008299 9008299 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . MUC16 NM_024690 exon41 c.C39253A p.H13085N GGTGGTGGGTGCA 151 5 0.03 137 1 0.0072992701 4315 0 0 OR7G1 125962 mdanderson.org 37 19 9226017 9226017 + Nonsense_Mutation SNP C C T rs2217657 bycluster;byfrequency;byhapmap;by1000genomes TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 OR7G1,NS,carcinoma,0,3 OR7G1 NM_001005192 exon1 c.G423A p.W141X CAAGCCCCAGAAA 120 3 0.03 108 0 0 0 3 0 0 ANKLE1 126549 broad.mit.edu 37 19 17397498 17397501 + Frame_Shift_Del DEL TGTT TGTT - rs35771129 alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 TGTT TGTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . ANKLE1 . . . . TGTGTGTGTTTGT 9 8 0.89 10 0 0 27 4 0 0.00 ZNF30 90075 broad.mit.edu;mdanderson.org 37 19 35424555 35424555 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . ZNF30 NM_001099438 exon4 c.G187T p.V63L CCACATGTGATCG 128 5 0.04 127 0 0 44 7 0 0.00 ZNF540 163255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38103317 38103317 + Missense_Mutation SNP G G C novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 ZNF540,NS,carcinoma,+1,1 ZNF540 NM_152606 exon5 c.G1136C p.G379A ATGCAGGTAAGAA 117 14 0.12 83 0 0 1 1 29 9 0.31 RYR1 6261 broad.mit.edu 37 19 38964342 38964342 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . RYR1 NM_001042723 exon28 c.G4091T p.G1364V AGGCGGGGGGAGA 102 3 0.03 58 0 0 708 0 0 GYS1 2997 mdanderson.org 37 19 49488754 49488754 + Missense_Mutation SNP C C T rs372637032 TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_002103 exon5 c.G787A p.A263T CGATGGCGGTGAT 51 3 0.06 61 0 0 22 0 0.00 ZNF615 284370 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52496353 52496353 + Missense_Mutation SNP T T G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001199324 exon7 c.A2009C p.K670T GAGAATTTTCCAC 189 24 0.13 154 0 0 12 0 0.00 ZNF525 170958 broad.mit.edu 37 19 53879109 53879109 + Silent SNP G G A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . ZNF525 . . . . ATACAGGGACGTG 46 5 0.11 62 1 0.0161290323 35 13 0 0.00 HTRA2 27429 broad.mit.edu 37 2 74757212 74757212 + Missense_Mutation SNP A A G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . HTRA2 NM_013247 exon1 c.A79G p.R27G TGGGGGAGGAGAC 130 11 0.08 80 5 0.0625 22 12 0 0.00 HK2 3099 broad.mit.edu 37 2 75105841 75105841 + Missense_Mutation SNP G G A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . HK2 NM_000189 exon9 c.G1058A p.R353H AGGCCCGTGAGGT 381 4 0.01 298 0 0 85 4 0 0.00 . 0 broad.mit.edu 37 2 91887904 91887905 + RNA INS - - T rs369805878 alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . ATTTTCCATTTTT 168 10 0.06 170 4 0.0235294118 0 0 SAP130 79595 mdanderson.org 37 2 128770644 128770644 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001145928 exon6 c.C782A p.A261D GGCTGAGCAGTAG 81 5 0.06 71 0 0 51 0 0.00 TANK 10010 broad.mit.edu 37 2 162087512 162087512 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . TANK NM_004180 exon7 c.C551T p.T184M AGTGTACGGATAA 240 6 0.03 285 0 0 35 40 0 0.00 CCDC173 129881 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 170537595 170537595 + Silent SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001085447 exon2 c.C216A p.L72L TGCACGGAGGCAT 178 8 0.04 170 0 0 1 0 0.00 OBSL1 23363 mdanderson.org 37 2 220430190 220430190 + Silent SNP G G T rs199883250 TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001173431 exon6 c.C2181A p.T727T TGTGAAGGTCAAC 32 3 0.09 45 0 0 0.001 87 0 0.00 ZNF341 84905 mdanderson.org 37 20 32379155 32379155 + Silent SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 ZNF341,bladder,carcinoma,0,1 ZNF341 NM_032819 exon15 c.G2376T p.A792A GGACGCGGTGCTG 26 2 0.08 53 0 0 0 1 16 0 0.00 MYH7B 57644 mdanderson.org 37 20 33584173 33584173 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_020884 exon29 c.G3094T p.A1032S GAGATGGCTGCGC 44 3 0.07 54 0 0 0 0 NFATC2 4773 bcgsc.ca 37 20 50140461 50140461 + Missense_Mutation SNP A A G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 NFATC2,NS,carcinoma,+2,1 NFATC2 NM_012340 exon2 c.T319C p.S107P GGCCCGAGGCCCC 69 4 0.06 73 0 0 112 1 0 0 . 54053 bcgsc.ca 37 21 11180933 11180933 + RNA SNP A A C rs79885392 bycluster;byfrequency TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . TTTACAAGTTTTT 114 9 0.08 100 1 0.01 0 0 LSS 4047 mdanderson.org 37 21 47642609 47642609 + Silent SNP G G T rs11558754 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001145436 exon4 c.C363A p.A121A GTATCCGGCTGGC 50 3 0.06 48 0 0 13 0 0.00 CABIN1 23523 mdanderson.org 37 22 24445671 24445671 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001201429 exon7 c.G645T p.M215I CAGAATGTTCCTC 29 3 0.10 37 0 0 10 0 0.00 HORMAD2 150280 mdanderson.org 37 22 30572077 30572077 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_152510 exon11 c.G845T p.S282I TGTGCAGTCAGCA 40 3 0.08 54 0 0 0 0 SLC16A8 23539 mdanderson.org 37 22 38477003 38477003 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_013356 exon4 c.G1042A p.A348T AGAAGGCGACGAG 13 2 0.15 16 0 0 0 0 HESX1 8820 broad.mit.edu 37 3 57232488 57232488 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . HESX1 NM_003865 exon3 c.C390A p.N130K ATAGCAGTTTACT 253 6 0.02 256 0 0 26 9 0 0.00 ACAD11 84129 mdanderson.org 37 3 132277850 132277850 + Missense_Mutation SNP G G A rs200376706 by1000genomes TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 ACAD11,NS,carcinoma,0,1 ACAD11 NM_032169 exon20 c.C2308T p.R770W GGTCCCGCAGCTC 112 6 0.05 111 0 0 0 0 1 211 0 0.00 CRMP1 1400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 5837737 5837737 + Missense_Mutation SNP G G A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001014809 exon11 c.C1528T p.P510S TCCTTGGGTACAG 142 24 0.17 154 0 0 13 2 0.15 DNAH5 1767 broad.mit.edu 37 5 13830171 13830171 + Silent SNP C C G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . DNAH5 NM_001369 exon37 c.G6213C p.V2071V CATAGTCACATTA 281 4 0.01 326 1 0.0030674847 868 0 0 BASP1 10409 mdanderson.org 37 5 17275706 17275706 + Silent SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_006317 exon2 c.G381T p.A127A CGCCGCGGCCCCG 20 2 0.10 20 0 0 4 0 0.00 MEGF10 84466 mdanderson.org 37 5 126792994 126792994 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001256545 exon25 c.G3407T p.S1136I ACAGCAGCAGCAG 39 3 0.08 28 0 0 0 0 PCDHA13 56136 mdanderson.org 37 5 140263827 140263827 + Silent SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_031865 exon1 c.G1974T p.A658A GCCCGCGCTGACG 47 3 0.06 40 0 0 0 0 FAF2 23197 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 175875462 175875462 + Silent SNP G G A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_014613 exon1 c.G54A p.L18L GCTGCTGCAGTTT 68 17 0.25 77 0 0 13 7 0.54 BTN2A2 10385 hgsc.bcm.edu 37 6 26384092 26384092 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 BTN2A2_ENST00000432533,bladder,carcinoma,-1,2 BTN2A2_ENST00000432533 NM_181531 exon2 c.C43T p.L15F GCCTCCCTCCTCC 120 7 0.06 87 2 0.0229885057 -1 2 16 0 0.00 MOCS1 4337 mdanderson.org 37 6 39881102 39881102 + Missense_Mutation SNP A A G rs7762875 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001075098 exon6 c.T716C p.L239P AGGGGGAGGCCCT 93 5 0.05 107 1 0.0093457944 15 0 0.00 TTK 7272 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 80747723 80747723 + Missense_Mutation SNP G G A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 TTK,NS,NS,0,1 TTK NM_003318 exon18 c.G2089A p.D697N ATCAAAGATATGT 218 19 0.09 225 2 0.0088888889 0 1 230 66 0.29 . 0 bcgsc.ca 37 7 55004383 55004383 + RNA SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . AGTGACCATTCCA 68 6 0.09 43 0 0 0 0 CUX1 1523 broad.mit.edu 37 7 101882800 101882800 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . CUX1 NM_001202543 exon23 c.G3856T p.E1286X ACCATCGAAGACC 244 7 0.03 168 0 0 253 21 0 0.00 KLHDC10 23008 mdanderson.org 37 7 129710491 129710491 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_014997 exon1 c.C8T p.A3V TGTCGGCCGCCCA 33 3 0.09 10 0 0 0 0 . 0 bcgsc.ca 37 8 13880458 13880458 + RNA SNP A A T rs148780946 by1000genomes;alternate_allele TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . . . . . GAACTGATTTTTT 175 43 0.25 154 1 0.0064935065 1 0 0.00 MTFR1 9650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 66605961 66605961 + Missense_Mutation SNP C C A novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_014637 exon4 c.C248A p.A83D GGGTAGCCAAAGA 204 52 0.25 135 0 0 125 45 0.36 ESRP1 54845 broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 95655639 95655639 + Missense_Mutation SNP A A G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . ESRP1 NM_001122827 exon3 c.A370G p.K124E GCTTCCAAGAAGG 74 6 0.08 56 0 0 148 28 6 0.21 GDF6 392255 broad.mit.edu 37 8 97157410 97157411 + Frame_Shift_Del DEL CG CG - novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 CG CG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . GDF6 NM_001001557 exon2 c.748_749del p.250_250del GGTCCCCGCGCGC 6 3 0.50 8 0 0 57 0 0 KCNS2 3788 mdanderson.org 37 8 99441319 99441319 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_020697 exon2 c.G1112T p.S371I CCGTCAGTATGAC 89 4 0.04 63 0 0 0 0 SHB 6461 mdanderson.org 37 9 38068265 38068265 + Silent SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_003028 exon1 c.C378A p.R126R GAAGGCGCGCTGG 18 2 0.11 12 0 0 1 0 0.00 TMC1 117531 broad.mit.edu 37 9 75420368 75420368 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . TMC1 NM_138691 exon18 c.G1637T p.R546M TTCTAAGGGCATG 146 5 0.03 134 0 0 87 4 0 0.00 SYK 6850 broad.mit.edu 37 9 93637110 93637110 + Missense_Mutation SNP A A G novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 SYK,rectum,carcinoma,-1,1 SYK NM_003177 exon9 c.A1160G p.K387R TGAAAAAGGGCTA 103 4 0.04 96 1 0.0104166667 132 1 14 0 0.00 LAMC3 10319 mdanderson.org 37 9 133884953 133884953 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_006059 exon1 c.G352T p.V118F ACCTCGGTCAACA 47 4 0.09 66 0 0 7 0 0.00 KLHL34 257240 mdanderson.org 37 X 21675219 21675219 + Missense_Mutation SNP C C T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_153270 exon1 c.G688A p.A230T CGTCGGCGGGAAC 39 3 0.08 30 0 0 0 0 PCYT1B 9468 mdanderson.org 37 X 24605360 24605360 + Missense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_001163265 exon5 c.C563A p.A188E TCACCTGCTTCCT 39 3 0.08 29 1 0.0344827586 0 0 RGAG1 57529 hgsc.bcm.edu;mdanderson.org 37 X 109694020 109694020 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . . NM_020769 exon3 c.G175T p.G59X GACCCTGGAGGGA 102 5 0.05 94 0 0 1 0 0.00 TKTL1 8277 broad.mit.edu;mdanderson.org 37 X 153540936 153540936 + Nonsense_Mutation SNP G G T novel TCGA-VF-A8AC-01A-11D-A435-10 TCGA-VF-A8AC-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 89c25d23-5322-45d9-9ac6-b3c110504481 47b52d7b-baa4-46ba-ac7c-c6cc2deaaaf7 . TKTL1 NM_012253 exon6 c.G676T p.E226X GGTATTGAGGATG 80 5 0.06 91 0 0 61 8 0 0.00