Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV CCDC18 0 broad.mit.edu 37 1 93744309 93744310 + RNA INS - - T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . CCDC18 . . . . ATGCAAATTTTTT 6 3 0.50 8 0 0 93 0 0 IGSF3 3321 ucsc.edu;bcgsc.ca 37 1 117142641 117142641 + Missense_Mutation SNP G G A rs76417519 bycluster;byfrequency TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . IGSF3 NM_001542 exon8 c.C2011T p.R671W TCTTCCGCCACAG 83 10 0.12 70 3 0.0428571429 294 49 0 0.00 SEC22B 9554 broad.mit.edu 37 1 145116147 145116148 + RNA INS - - A rs113058116 bycluster TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . GATTGTTATTTCG 6 2 0.33 7 0 0 91 0 0.00 HRNR 388697 bcgsc.ca 37 1 152188062 152188062 + Missense_Mutation SNP T T C rs79940627 bycluster;byfrequency TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . HRNR NM_001009931 exon3 c.A6043G p.T2015A CATGGGTAGAGGA 227 11 0.05 237 2 0.0084388186 403 0 0 BROX 148362 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 1 222903028 222903028 + Nonsense_Mutation SNP C C T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_144695 exon10 c.C823T p.Q275X TCTCTCCAAGAAG 95 8 0.08 124 0 0 27 1 0.04 SKIDA1 387640 mdanderson.org 37 10 21806050 21806050 + Silent SNP A A G novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_207371 exon4 c.T702C p.A234A GGCGGCAGCAGCG 19 8 0.42 19 0 0 0 0 SKIDA1 387640 mdanderson.org 37 10 21806056 21806056 + Silent SNP G G A novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_207371 exon4 c.C696T p.A232A AGCAGCGGCGGCG 25 12 0.48 20 0 0 0 0 ENTPD1-AS1 0 hgsc.bcm.edu 37 10 97684298 97684298 + RNA SNP T T A novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . ATATATTTTCCTT 134 8 0.06 168 0 0 0 0 . 728658 bcgsc.ca 37 10 98510149 98510149 + RNA SNP T T C rs186308547 by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . GGTGGTTGTACGC 53 7 0.13 52 0 0 144 104 0.72 . 728658 bcgsc.ca 37 10 98510250 98510250 + RNA SNP T T G novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . CCCGAGTCCCCTA 67 12 0.18 85 0 0 191 82 0.43 MUC6 4588 bcgsc.ca 37 11 1017900 1017900 + Missense_Mutation SNP G G T rs77920671 bycluster;byfrequency TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . MUC6 NM_005961 exon31 c.C4901A p.P1634H TGGGTAGGGGTGA 184 9 0.05 286 4 0.013986014 408 0 0 . 390053 bcgsc.ca;mdanderson.org 37 11 5141902 5141902 + RNA SNP T T C rs10837374 bycluster;byfrequency;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . AATGTGTTTGGTC 75 5 0.07 108 0 0 0 0 MMP1 4312 mdanderson.org 37 11 102668807 102668807 + Missense_Mutation SNP G G T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_002421 exon1 c.C17A p.P6Q AGCAGTGGAGGAA 33 3 0.09 29 0 0 1 0 0.00 NACA 4666 bcgsc.ca 37 12 57110530 57110530 + Missense_Mutation SNP G G T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . NACA . . . . TTGGGGGATGGGG 98 6 0.06 89 0 0 131 1 0 0.00 . 0 broad.mit.edu 37 14 106573362 106573364 + RNA DEL ACC ACC - novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 ACC ACC Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . GGTACTACCACTA 326 3 0.01 317 0 0 96 0 0.00 . 0 broad.mit.edu 37 15 20588563 20588563 + RNA SNP A A G rs2291972 bycluster;byfrequency;by2hit2allele TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . TTGCAGAAGCCCA 70 4 0.06 69 0 0 17 0 0.00 . 0 bcgsc.ca 37 16 32626855 32626855 + RNA SNP A A G rs28446891 bycluster;byfrequency TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . ACAGACATGCCCA 160 7 0.04 181 1 0.0055248619 0 0 ZNF276 92822 hgsc.bcm.edu 37 16 89793728 89793728 + Missense_Mutation SNP G G T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_001113525 exon5 c.G1048T p.D350Y TCGGATGATCGGG 117 5 0.04 128 0 0 20 0 0.00 . 388363 bcgsc.ca 37 17 26794863 26794863 + RNA SNP T T C novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . CAAGATTGTGAAG 84 5 0.06 80 0 0 48 38 0.79 TXNDC2 84203 hgsc.bcm.edu 37 18 9886918 9886918 + Missense_Mutation SNP A A G rs142946305 bycluster TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 TXNDC2_ENST00000306084,NS,carcinoma,0,4 TXNDC2_ENST00000306084 NM_001098529 exon2 c.A442G p.N148D GAGAGTAACATCC 71 4 0.06 120 1 0.0083333333 0 0 4 0 0 ATCAY 85300 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 3909500 3909500 + Frame_Shift_Del DEL T T - novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . ATCAY NM_033064 exon7 c.663delC p.S221fs AGCAGCTTAGAGC 54 16 0.30 81 0 0 84 8 0 0.00 . 0 bcgsc.ca 37 19 22868665 22868665 + Missense_Mutation SNP A A G rs148261119 bycluster;byfrequency;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . CTTACTACACATA 90 5 0.06 105 0 0 1 0 0.00 . 2866 bcgsc.ca;mdanderson.org 37 19 35863014 35863014 + Silent SNP C C T rs145254622 bycluster;byfrequency;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . TATCTGCGGTGAA 74 6 0.08 109 0 0 0 0 . 0 bcgsc.ca 37 19 41414408 41414408 + Missense_Mutation SNP C C G rs17656995 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . TAGTTTCGTGGGA 115 7 0.06 135 0 0 1 0 0.00 B3GNT8 374907 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41932262 41932262 + Missense_Mutation SNP C C G novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_198540 exon3 c.G422C p.S141T GAGCAGCTGGAGA 68 23 0.34 113 0 0 3 0 0.00 PSG7 5676 broad.mit.edu 37 19 43440069 43440070 + RNA INS - - AA rs147024666 bycluster;by1000genomes;alternate_allele TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . CACAAACACACAC 12 5 0.42 9 0 0 0 0 . 0 broad.mit.edu 37 2 38709067 38709067 + RNA SNP A A G rs113173138 TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . TTATCCAAAATGT 32 4 0.13 34 0 0 54 50 0.93 . 0 broad.mit.edu 37 2 38709079 38709079 + RNA SNP C C T rs111340107 bycluster;byfrequency;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . TTTCATCGTGGGA 35 4 0.11 42 0 0 48 26 0.54 GYPC 2995 bcgsc.ca 37 2 127413734 127413734 + Missense_Mutation SNP C C G rs11542968 bycluster;byfrequency;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . GYPC . . . . CCGCTTCCTCTCG 29 4 0.14 25 0 0 27 3 0 0.00 . 0 bcgsc.ca 37 2 132591478 132591478 + RNA SNP T T C rs7597931 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . GCCCAGTCCAGGG 19 4 0.21 24 0 0 0 0 NECAB3 63941 mdanderson.org 37 20 32247749 32247749 + Silent SNP G G T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_031231 exon7 c.C585A p.R195R GGCTCGGCGTCCT 36 3 0.08 31 0 0 41 1 0.02 ELMO2 63916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45017782 45017782 + Silent SNP C C T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_182764 exon6 c.G321A p.L107L CTTGGCCAGCTCC 94 19 0.20 64 0 0 35 8 0.23 LIME1 54923 mdanderson.org 37 20 62369750 62369750 + Silent SNP C C T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_017806 exon5 c.C483T p.S161S GGCCAGCCCTGTG 26 3 0.12 25 0 0 44 0 0.00 TCF20 6942 bcgsc.ca;mdanderson.org 37 22 42608414 42608414 + Missense_Mutation SNP G G T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . TCF20 NM_181492 exon1 c.C2898A p.S966R TCCAGGGCTGGCA 125 7 0.06 147 0 0 164 41 0 0.00 . 0 bcgsc.ca 37 3 72926390 72926390 + RNA SNP A A G rs7610496 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . TTATTCAGTGAAC 229 9 0.04 208 0 0 0 0 TLR1 7096 broad.mit.edu 37 4 38798148 38798148 + Frame_Shift_Del DEL A A - novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . TLR1 NM_003263 exon4 c.2305delT p.W769fs TAGCCCAAAAAAG 164 7 0.04 178 0 0 70 10 0 0.00 . 9425 bcgsc.ca;mdanderson.org 37 6 4735071 4735071 + Missense_Mutation SNP C C G rs28360500 bycluster;byfrequency;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 CDYL,NS,carcinoma,0,1 . . . . . CTCCCGCTTTACA 65 5 0.08 95 0 0 1 0 0 ITPR3 3710 hgsc.bcm.edu;mdanderson.org 37 6 33638140 33638140 + Missense_Mutation SNP G G T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_002224 exon19 c.G2228T p.R743L TGGACCGCCAGTA 60 4 0.07 89 0 0 58 0 0.00 CCDC170 80129 mdanderson.org 37 6 151815308 151815308 + Silent SNP G G A novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . NM_025059 exon1 c.G45A p.S15S CGCTTCGCCAGCG 13 2 0.15 15 0 0 0 0 . 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 1733102 1733102 + Missense_Mutation SNP G G T rs4720922 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . CACCCAGACAGGT 203 9 0.04 228 1 0.0043859649 0 0 . 135942 bcgsc.ca 37 7 143815824 143815824 + RNA SNP C C T novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . GGCCGCCAGGATG 84 5 0.06 60 0 0 0 0 CDCA2 157313 ucsc.edu 37 8 25364715 25364715 + Missense_Mutation SNP G G A novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 CDCA2,NS,carcinoma,0,3 CDCA2 NM_152562 exon15 c.G2533A p.E845K CATTTGGAAAAAA 124 3 0.02 76 0 0 78 3 106 17 0.16 rescued with RNA-seq . 441391 bcgsc.ca 37 9 30690221 30690221 + RNA SNP G G C rs12340776 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . CCAAGCGGTGGTG 222 15 0.07 276 0 0 0 0 . 0 bcgsc.ca 37 9 90796001 90796001 + RNA SNP G G A rs3818707 bycluster;byfrequency;byhapmap;by1000genomes TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . TTCAAGGCCCTGT 70 6 0.09 93 0 0 0 0 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 1824 1824 + RNA SNP T T C novel TCGA-W4-A7U4-01A-12D-A435-10 TCGA-W4-A7U4-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 93e5db42-7b98-42ed-bb10-42cc65aa7f42 3a394593-a286-4619-ac57-928781488648 . . . . . . ATAATATAGCAAG 23 8 0.35 23 0 0 0 0