Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV ACOT7 11332 mdanderson.org 37 1 6324673 6324673 + Missense_Mutation SNP G G T rs139667005 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ACOT7 NM_181864 exon9 c.C1127A p.A376E GGCTCCGCGTGGC 53 3 0.06 46 0 0 71 1150 0 0.00 ESPNP 0 broad.mit.edu 37 1 17030903 17030905 + RNA DEL GAG GAG - rs55663095 alternate_allele TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 GAG GAG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . . . . . ATCGACGAGGAGG 8 4 0.50 5 0 0 0 0 AGO3 192669 bcgsc.ca;mdanderson.org 37 1 36469953 36469953 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . NM_024852 exon6 c.G670A p.A224T GCCACTGCCTTCT 94 5 0.05 78 0 0 6 0 0.00 MMACHC 25974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 45973168 45973168 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . NM_015506 exon2 c.G222A p.M74I CCGAATGCTGACT 116 20 0.17 115 0 0 32 6 0.19 CTH 1491 broad.mit.edu 37 1 70877110 70877110 + Silent SNP A A G novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . CTH NM_153742 exon1 c.A12G p.K4K GGAAAAAGACGCC 207 4 0.02 202 0 0 48 244 0 0.00 KCNA2 3737 bcgsc.ca;mdanderson.org 37 1 111147358 111147358 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KCNA2 NM_001204269 exon3 c.C47A p.P16H TGCCCAGGGAGGG 123 5 0.04 144 0 0 61 1 0 0.00 ITGA10 8515 mdanderson.org 37 1 145532485 145532485 + Missense_Mutation SNP G G T rs151338211 alternate_allele TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 ITGA10,NS,carcinoma,+1,1 ITGA10 NM_003637 exon9 c.G938T p.R313L GGCAGCGAGATCC 57 3 0.05 56 0 0 131 1 0 0 KCNN3 3782 mdanderson.org 37 1 154698449 154698449 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KCNN3 NM_001204087 exon6 c.C1689A p.L563L TTTGGTGAGTTCC 43 3 0.07 50 0 0 141 4 0 0.00 ILDR2 387597 mdanderson.org 37 1 166890443 166890443 + Nonsense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ILDR2 NM_199351 exon9 c.C1385A p.S462X GCCCGCGACTCCG 16 2 0.13 15 0 0 79 4 0 0.00 FMN2 56776 mdanderson.org 37 1 240255583 240255583 + Silent SNP C C G novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 FMN2,NS,carcinoma,0,1 FMN2 NM_020066 exon1 c.C174G p.G58G CGGCGGCGGGGAG 28 2 0.07 33 0 0 451 1 2 0 0.00 OR2T3 343173 broad.mit.edu 37 1 248637495 248637495 + Frame_Shift_Del DEL T T - novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . OR2T3 NM_001005495 exon1 c.844delT p.F282fs TCTGCCTTTTACA 869 7 0.01 813 0 0 79 0 0 CUL2 8453 mdanderson.org 37 10 35300781 35300781 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . CUL2 NM_001198778 exon20 c.C2158A p.Q720K CCTCTTGAATAAG 59 3 0.05 62 0 0 63 199 0 0.00 ERCC6 2074 mdanderson.org 37 10 50708743 50708743 + Splice_Site SNP C C A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ERCC6 NM_000124 exon8 c.1527-1G>T . TGGTACCTATGAC 49 3 0.06 54 0 0 162 0 0 ANXA7 310 mdanderson.org 37 10 75138760 75138760 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ANXA7 NM_004034 exon13 c.C1253A p.P418H AAGGCAGGGCGGT 46 3 0.07 70 0 0 50 361 0 0.00 EXOC6 54536 broad.mit.edu 37 10 94773973 94773973 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . EXOC6 NM_019053 exon20 c.G2118T p.V706V GCCTGTGCCAGGA 364 5 0.01 385 1 0.0025974026 147 32 0 0.00 ZDHHC16 84287 mdanderson.org 37 10 99214534 99214534 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ZDHHC16 NM_198046 exon9 c.G802T p.V268F AGTCTTGTCTACC 148 6 0.04 126 0 0 25 423 0 0.00 HPS6 79803 mdanderson.org 37 10 103825727 103825727 + Silent SNP C C A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . HPS6 NM_024747 exon1 c.C496A p.R166R TGCGTCCGGACTC 16 2 0.13 18 0 0 38 31 3 0.10 PPRC1 23082 mdanderson.org 37 10 103892979 103892979 + Splice_Site SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PPRC1 NM_015062 exon1 c.153+1G>T . GAGCAGGTGAGAG 51 3 0.06 44 0 0 151 5 0 0.00 TH 7054 mdanderson.org 37 11 2188684 2188684 + Missense_Mutation SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . TH NM_199292 exon7 c.G769A p.A257T CCTCGGCGGTGTA 54 3 0.06 69 0 0 43 0 0 ILK 3611 mdanderson.org 37 11 6625505 6625505 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ILK NM_001014794 exon2 c.G4T p.D2Y GCTATGGACGACA 36 3 0.08 39 0 0 41 200 0 0.00 ABCC8 6833 mdanderson.org 37 11 17464383 17464383 + Missense_Mutation SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ABCC8 NM_000352 exon10 c.G1514A p.G505D TTGATGCCGCGGA 47 3 0.06 55 0 0 170 2 0 0.00 PCNXL3 399909 mdanderson.org 37 11 65386388 65386388 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PCNXL3 NM_032223 exon6 c.G1555A p.A519T CCACTGGCTGGCT 24 2 0.08 32 0 0 140 53 0 0.00 SORL1 6653 mdanderson.org 37 11 121475015 121475015 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . SORL1 NM_003105 exon33 c.G4633T p.D1545Y GAGAGCGATGAAA 44 3 0.07 42 0 0 218 37 0 0.00 EMG1 10436 broad.mit.edu;mdanderson.org 37 12 7084421 7084421 + RNA SNP C C G novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . . . . . CACTTTCCAGTTG 307 24 0.08 124 1 0.0080645161 2244 199 0.09 MRPS35 60488 broad.mit.edu;mdanderson.org 37 12 27863860 27863860 + Silent SNP G G T rs145435105 byfrequency TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . MRPS35 NM_001190864 exon1 c.G84T p.S28S CTACTCGGCCACT 95 4 0.04 61 0 0 26 729 0 0.00 HOXC10 3226 broad.mit.edu 37 12 54379332 54379332 + Missense_Mutation SNP T T C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . HOXC10 NM_017409 exon1 c.T289C p.S97P CCGCTGTCCTCCT 69 4 0.06 72 0 0 42 1 0 0.00 RNF10 9921 mdanderson.org 37 12 120972700 120972700 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . RNF10 NM_014868 exon1 c.G86A p.G29D CTTCGGGCAGCAG 21 2 0.10 24 0 0 75 244 0 0.00 CDK8 1024 mdanderson.org 37 13 26956976 26956976 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . CDK8 NM_001260 exon5 c.G482T p.G161V TTATGGGTGAAGG 52 3 0.06 55 0 0 61 19 0 0.00 . 0 bcgsc.ca 37 14 22070772 22070772 + RNA SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . . . . . GCACTCCCAGAAG 113 13 0.12 151 0 0 0 0 PCK2 5106 mdanderson.org 37 14 24567817 24567817 + Silent SNP G G T rs373177664 bycluster TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PCK2 NM_004563 exon4 c.G594T p.V198V ACCTGTGCTTCAG 52 3 0.06 57 0 0 66 80 0 0.00 TGM1 7051 mdanderson.org 37 14 24724426 24724426 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . TGM1 NM_000359 exon12 c.C1679T p.A560V GCTGCTGCTGTCT 50 3 0.06 76 0 0 73 3 0 0.00 ZFP36L1 677 mdanderson.org 37 14 69256669 69256669 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 ZFP36L1,NS,carcinoma,+1,1 ZFP36L1 NM_001244701 exon3 c.C805A p.H269N AGCTATGCTGGAG 31 3 0.10 33 0 0 47 1 443 0 0.00 . 317775 bcgsc.ca 37 14 90204733 90204733 + RNA SNP G G C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . . . . . AGCACCGGTTTGA 30 5 0.17 38 0 0 0 0 FSIP1 161835 mdanderson.org 37 15 40034047 40034047 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . FSIP1 NM_152597 exon6 c.C614A p.P205H TCTGGAGGGATTT 47 3 0.06 50 0 0 53 3 0 0.00 ITGA11 22801 mdanderson.org 37 15 68628046 68628046 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ITGA11 NM_001004439 exon12 c.C1414T p.R472W GGCCCCGCATAGC 62 3 0.05 91 0 0 110 22 0 0.00 ARIH1 25820 broad.mit.edu 37 15 72767235 72767235 + Silent SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ARIH1 NM_005744 exon1 c.C255T p.G85G CGGCGGCGGTGGT 61 6 0.10 74 1 0.0135135135 42 1 0 0.00 PML 5371 mdanderson.org 37 15 74327860 74327860 + Nonsense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PML NM_033239 exon8 c.G2058A p.W686X GACTTGGTCTCCC 34 4 0.12 36 0 0 169 117 1 0.01 PIGQ 9091 mdanderson.org 37 16 626214 626214 + Missense_Mutation SNP G G A rs371210440 TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PIGQ NM_148920 exon4 c.G902A p.R301H GAAGCCGCATCGG 40 3 0.08 50 0 0 43 72 0 0.00 NTHL1 4913 ucsc.edu;bcgsc.ca 37 16 2096364 2096364 + Missense_Mutation SNP G G T rs375615004 alternate_allele TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . NTHL1 NM_002528 exon2 c.C143A p.A48E TTCCTCGCTTCTG 42 4 0.10 64 0 0 24 156 0 0.00 CREBBP 1387 mdanderson.org 37 16 3778522 3778522 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . CREBBP NM_004380 exon31 c.C6526A p.P2176T GTCCTGGGTTCAT 47 3 0.06 65 0 0 546 222 0 0.00 KIFC3 3801 mdanderson.org 37 16 57803627 57803627 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KIFC3 NM_005550 exon9 c.C1098A p.T366T CAAGTTGGTCCGG 47 3 0.06 51 0 0 55 51 0 0.00 TCF25 22980 broad.mit.edu 37 16 89940142 89940142 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . TCF25 NM_014972 exon1 c.G67T p.A23S CCCGGCGCCTTGC 71 6 0.08 72 1 0.0138888889 61 150 2 0.01 TMEM132E 124842 mdanderson.org 37 17 32964437 32964437 + Missense_Mutation SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . TMEM132E NM_207313 exon10 c.C2141T p.T714M TCGCCACGACCCC 48 3 0.06 65 0 0 122 0 0 KRT26 353288 broad.mit.edu 37 17 38925171 38925171 + Missense_Mutation SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KRT26 NM_181539 exon6 c.G1147A p.E383K CAATTTCTTTTTC 95 15 0.16 111 8 0.0720720721 49 0 0 BRCA1 672 hgsc.bcm.edu;bcgsc.ca 37 17 41234509 41234509 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 BRCA1,NS,carcinoma,0,1 BRCA1 NM_007300 exon12 c.C4269A p.S1423R AGGCTGGCTCCCA 115 6 0.05 112 0 0 0 1 82 0 0.00 . 0 broad.mit.edu 37 17 43601766 43601766 + RNA DEL A A - novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . . . . . CAGGTCAAAAACC 7 2 0.29 8 0 0 3 0 0.00 TLK2 11011 broad.mit.edu 37 17 60637441 60637441 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 TLK2_ENST00000346027,NS,carcinoma,0,31 TLK2 NM_006852 exon10 c.G785A p.R262Q AGGAACGATTAAA 457 7 0.02 500 0 0 223 31 43 0 0.00 SMCHD1 23347 mdanderson.org 37 18 2724961 2724961 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . SMCHD1 NM_015295 exon21 c.G2668T p.A890S GTTACAGCCAAGG 67 4 0.06 87 0 0 88 26 0 0.00 LRG1 116844 mdanderson.org 37 19 4538737 4538737 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . LRG1 NM_052972 exon2 c.C259A p.L87I GGAGGAGGTTGGC 52 3 0.06 59 0 0 25 6 0 0.00 KHSRP 8570 mdanderson.org 37 19 6417053 6417053 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KHSRP NM_003685 exon12 c.C1127A p.P376Q CTGTCTGGGGGCC 36 3 0.08 51 0 0 51 1844 1 0.00 KRI1 65095 mdanderson.org 37 19 10665783 10665783 + Missense_Mutation SNP G G C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KRI1 NM_023008 exon18 c.C1779G p.F593L TGACTTGAAGACC 57 3 0.05 93 0 0 65 181 0 0.00 KANK2 25959 broad.mit.edu 37 19 11304551 11304551 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KANK2 NM_015493 exon2 c.C205A p.R69S TCAGGCGGGGGCG 109 4 0.04 130 0 0 47 59 0 0.00 EPOR 2057 mdanderson.org 37 19 11492419 11492419 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . EPOR NM_000121 exon4 c.C534A p.I178I GTAGCGGATGTGA 47 3 0.06 81 0 0 26 11 0 0.00 F2RL3 9002 mdanderson.org 37 19 17000071 17000071 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . F2RL3 NM_003950 exon1 c.G71T p.S24I CCCCCAGCGTCTA 42 3 0.07 56 0 0 20 2 0 0.00 CILP2 148113 mdanderson.org 37 19 19655439 19655439 + Silent SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . CILP2 NM_153221 exon8 c.C2085T p.S695S GGAGAGCGGCTTC 16 2 0.13 20 0 0 84 10 0 0.00 ZNF492 57615 mdanderson.org 37 19 22836775 22836775 + Missense_Mutation SNP C C A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 ZNF492_ENST00000456783,NS,carcinoma,0,1 ZNF492 NM_020855 exon3 c.C88A p.P30T AAAGAACCTTGGA 59 3 0.05 85 0 0 129 1 28 0 0.00 LTBP4 8425 broad.mit.edu;mdanderson.org 37 19 41113429 41113429 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . LTBP4 . . . . CCCTTCGGCTCAG 59 3 0.05 66 0 0 101 42 0 0.00 DACT3 147906 broad.mit.edu 37 19 47151865 47151865 + Silent SNP A A C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . DACT3 NM_145056 exon4 c.T1764G p.G588G TGCTCCACCCCCA 94 14 0.15 91 20 0.2197802198 26 10 1 0.10 GLTSCR1 29998 mdanderson.org 37 19 48204805 48204805 + Silent SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . GLTSCR1 NM_015711 exon15 c.C3816T p.S1272S CTCTTCCTCCTCC 26 2 0.08 43 0 0 79 57 0 0.00 SPHK2 56848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 49131956 49131956 + Silent SNP C C A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . NM_020126 exon7 c.C891A p.G297G CCTGGGCCTCGAC 22 7 0.32 31 0 0 22 6 0.27 NR1H2 7376 mdanderson.org 37 19 50885775 50885775 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . NR1H2 NM_007121 exon10 c.G1299T p.V433V CTCTGTGCACTCG 54 3 0.06 52 0 0 47 248 0 0.00 POLD1 5424 mdanderson.org 37 19 50918754 50918754 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . POLD1 NM_002691 exon21 c.G2624A p.R875H GCAACCGCATCGA 129 5 0.04 177 0 0 174 402 0 0.00 U2AF2 11338 mdanderson.org 37 19 56172490 56172490 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . U2AF2 NM_001012478 exon5 c.G421T p.G141W GTGGTCGGGAGCC 36 3 0.08 60 0 0 62 1310 1 0.00 PUM2 23369 mdanderson.org 37 2 20507802 20507802 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 PUM2,NS,carcinoma,+1,1 PUM2 NM_015317 exon6 c.C820A p.Q274K ACTGTTGAACTGT 44 3 0.07 50 0 0 91 1 84 0 0.00 EFR3B 22979 mdanderson.org 37 2 25364277 25364277 + Nonsense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . EFR3B NM_014971 exon17 c.G1897T p.E633X CTCCCCGAGGATG 54 3 0.06 55 0 0 29 72 0 0.00 . 0 bcgsc.ca 37 2 130987508 130987508 + RNA SNP G G T rs75869381 bycluster TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . . . . . AGGAAAGTGCTGA 72 7 0.10 52 0 0 45 2 0.04 NFE2L2 4780 broad.mit.edu 37 2 178096691 178096691 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . NFE2L2 NM_006164 exon5 c.C640A p.P214T GACTTGGAACCAT 250 6 0.02 255 1 0.0039215686 225 170 0 0.00 SPEG 10290 mdanderson.org 37 2 220342106 220342106 + Silent SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . SPEG NM_005876 exon20 c.C4668T p.T1556T CTACACCTGCACC 56 3 0.05 52 0 0 272 7 0 0.00 WDFY1 57590 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 224809898 224809898 + Missense_Mutation SNP T T C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . NM_020830 exon1 c.A104G p.K35R TCCTCCTTGGGGA 32 7 0.22 32 0 0 109 28 0.26 B3GNT7 93010 mdanderson.org 37 2 232263526 232263526 + Missense_Mutation SNP T T C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . B3GNT7 NM_145236 exon2 c.T1096C p.F366L CCGTGCTTTTTCC 13 2 0.15 24 0 0 38 294 1 0.00 MRPS26 64949 mdanderson.org 37 20 3027059 3027059 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . MRPS26 NM_030811 exon2 c.G253T p.A85S CACGAGGCCCGAG 28 3 0.11 33 0 0 7 610 1 0.00 PXMP4 11264 mdanderson.org 37 20 32307918 32307918 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PXMP4 NM_183397 exon1 c.C96A p.G32G CCGGAAGCCCTTA 68 4 0.06 70 0 0 20 16 0 0.00 MOCS3 27304 mdanderson.org 37 20 49576174 49576174 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . MOCS3 NM_014484 exon1 c.G795T p.A265A CGCTGCGGGTCTG 47 3 0.06 55 0 0 44 48 0 0.00 KRTAP10-7 386675 mdanderson.org 37 21 46020867 46020867 + Missense_Mutation SNP A A T rs944419 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . KRTAP10-7 NM_198689 exon2 c.A331T p.M111L TGCTGCATGCCCG 70 3 0.04 87 0 0 41 0 0 DIP2A 23181 mdanderson.org 37 21 47965817 47965817 + Silent SNP A A G novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . DIP2A NM_206890 exon20 c.A2337G p.G779G AGGAGGAGCACCC 46 3 0.07 56 0 0 332 38 0 0.00 LINC00207 388910 mdanderson.org 37 22 44966385 44966385 + RNA SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . LINC00207 . . . . GGTTCTGTTTAAA 55 3 0.05 77 0 0 8 0 0 ULK4 54986 mdanderson.org 37 3 41705146 41705146 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ULK4 NM_017886 exon30 c.C3023A p.A1008D TTCAGAGCATATG 55 3 0.05 76 0 0 150 10 0 0.00 PTPN23 25930 mdanderson.org 37 3 47448239 47448239 + Missense_Mutation SNP G G T rs148327878 bycluster;alternate_allele TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PTPN23 NM_015466 exon9 c.G806T p.R269L GGGAGCGGGTGAG 99 4 0.04 117 0 0 85 117 0 0.00 PVRL3 25945 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 110831212 110831212 + Missense_Mutation SNP G G C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PVRL3 NM_001243286 exon2 c.G496C p.V166L GTAACTGTGTTAG 227 34 0.15 213 2 0.0093896714 78 15 5 0.33 FAM86HP 729375 hgsc.bcm.edu 37 3 129818153 129818153 + RNA SNP A A C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . . . . . GGAAACAGTTTCT 623 26 0.04 630 0 0 13 0 0.00 NOP14 8602 mdanderson.org 37 4 2949327 2949327 + Silent SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . NOP14 NM_003703 exon10 c.C1425A p.G475G AAGAAAGCCAAAC 45 3 0.07 57 0 0 69 140 1 0.01 PCDH7 5099 mdanderson.org 37 4 30724751 30724751 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PCDH7 NM_002589 exon1 c.G1707T p.E569D CGCCGAGATCGCC 55 3 0.05 80 0 0 215 2 0 0.00 PDGFRA 5156 mdanderson.org 37 4 55153609 55153609 + Missense_Mutation SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PDGFRA NM_006206 exon19 c.G2575A p.V859M CTGCCCGTGAAGT 59 3 0.05 71 0 0 1583 53 0 0.00 TSPAN5 10098 mdanderson.org 37 4 99579371 99579371 + Missense_Mutation SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . TSPAN5 NM_005723 exon1 c.G7A p.G3R GCTTCCCGGACAT 51 3 0.06 85 0 0 32 28 0 0.00 PCDHB10 56126 mdanderson.org 37 5 140573922 140573922 + Silent SNP C C T rs376773467 bycluster TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . PCDHB10 NM_018930 exon1 c.C1797T p.N599N CCAGAACGCCTGG 25 2 0.08 13 0 0 177 0 0 PCDHGA8 0 broad.mit.edu 37 5 140774176 140774176 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 PCDHGA8,NS,carcinoma,0,4 PCDHGA8 NM_014004 exon1 c.G1796T p.G599V ACTCGGGCCAGAA 86 6 0.07 90 3 0.0333333333 146 4 2 0 0.00 ZNF184 7738 mdanderson.org 37 6 27435652 27435652 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ZNF184 NM_007149 exon3 c.C55A p.L19I ATGAGAGTAGATT 49 3 0.06 58 0 0 89 13 0 0.00 ZBTB9 221504 mdanderson.org 37 6 33423522 33423522 + Silent SNP G G A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ZBTB9 NM_152735 exon2 c.G645A p.E215E AGAAGAGGAGGAG 50 3 0.06 60 0 0 23 57 0 0.00 DEF6 50619 broad.mit.edu 37 6 35287347 35287347 + Missense_Mutation SNP C C A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . DEF6 NM_022047 exon8 c.C1262A p.A421D AGGAGGCTGCCCG 159 7 0.04 182 6 0.032967033 36 34 2 0.06 RIPPLY2 134701 mdanderson.org 37 6 84563870 84563870 + Missense_Mutation SNP C C A novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . RIPPLY2 NM_001009994 exon3 c.C229A p.H77N TTCAGGCACCCAG 49 3 0.06 61 0 0 17 1 0 0.00 LRP11 84918 mdanderson.org 37 6 150164182 150164182 + Missense_Mutation SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . LRP11 NM_032832 exon3 c.G850A p.A284T GCCCGGCAGTGTC 55 3 0.05 89 0 0 27 44 0 0.00 UNCX 340260 broad.mit.edu 37 7 1275520 1275520 + Missense_Mutation SNP A A G novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . UNCX NM_001080461 exon3 c.A503G p.K168R CGAAAAAGGGCCC 149 5 0.03 167 0 0 17 8 0 0.00 ZAN 7455 broad.mit.edu 37 7 100349991 100349991 + RNA SNP T T C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 ZAN_ENST00000542585,NS,carcinoma,0,5 ZAN . . . . ACCATCTCCCCAG 74 9 0.12 95 7 0.0736842105 658 5 0 0 ZAN 7455 broad.mit.edu 37 7 100350655 100350655 + RNA SNP T T C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . ZAN . . . . AAAAACTTACCAT 83 6 0.07 139 1 0.0071942446 658 3 0 0.00 MFHAS1 9258 broad.mit.edu 37 8 8748487 8748487 + Silent SNP A A C novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . MFHAS1 NM_004225 exon1 c.T2082G p.G694G GGTCAGACCCGCC 60 14 0.23 57 15 0.2631578947 58 62 6 0.10 CPSF1 29894 mdanderson.org 37 8 145618734 145618734 + Missense_Mutation SNP C C T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . CPSF1 NM_013291 exon37 c.G4217A p.R1406H AGGTAGCGGTTGA 44 3 0.07 69 0 0 92 784 0 0.00 NPR2 4882 mdanderson.org 37 9 35792487 35792487 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . NPR2 NM_003995 exon1 c.G82T p.A28S ACGCTGGCGGTGG 42 3 0.07 22 0 0 162 6 0 0.00 IPPK 64768 mdanderson.org 37 9 95400366 95400366 + Missense_Mutation SNP G G T novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . IPPK NM_022755 exon9 c.C833A p.A278E GTGCCTGCCCGGC 42 3 0.07 50 0 0 34 57 0 0.00 DCAF8L2 347442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 27765692 27765692 + Missense_Mutation SNP A A G novel TCGA-XE-A8H1-01A-11D-A435-10 TCGA-XE-A8H1-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 308bc9ed-2d07-4805-8c9b-721b6dac164d 74fe1db1-9f3c-4457-804a-9432ce8156f5 . . NM_001136533 exon1 c.A680G p.H227R CAGACCATGTCGG 117 43 0.37 104 0 0 15 0 0.00