Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV SCNN1D 6339 mdanderson.org 37 1 1226955 1226955 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001130413 exon18 c.G2374T p.A792S AGCTGGGCTGGGC 42 3 0.07 56 0 0 5 0 0.00 SKI 6497 mdanderson.org 37 1 2160973 2160973 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_003036 exon1 c.G768T p.P256P CCCGCCGCACAAG 30 2 0.07 34 0 0 23 0 0.00 KCNAB2 8514 mdanderson.org 37 1 6142261 6142261 + Nonsense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001199862 exon5 c.G307T p.E103X ATGGCAGAGCAGC 47 3 0.06 64 0 0 24 0 0.00 PGD 5226 broad.mit.edu 37 1 10464289 10464289 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . PGD NM_002631 exon5 c.G402T p.G134G GGAAGGGGCCCGG 59 3 0.05 83 0 0 39 1353 0 0.00 PGBD5 79605 bcgsc.ca;mdanderson.org 37 1 230503883 230503883 + Silent SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . PGBD5 . . . . TGGTGAGGAGGAG 112 5 0.04 180 0 0 73 1 0 0.00 PRR26 414235 mdanderson.org 37 10 707987 707987 + RNA SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . CCCGTGGCTCCAC 42 3 0.07 62 0 0 0 0 WDFY4 57705 broad.mit.edu 37 10 49951285 49951285 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . WDFY4 NM_020945 exon12 c.G2151T p.L717L CTGCCTGCTGGGC 98 4 0.04 130 0 0 205 2 0 0.00 PLCE1 51196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 95987141 95987141 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_016341 exon5 c.C1888T p.H630Y TTGGTGCATGTGG 165 35 0.21 194 0 0 9 4 0.44 HPX 3263 mdanderson.org 37 11 6452451 6452451 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_000613 exon10 c.G1379A p.C460Y TGAGTGCAGCCCA 47 3 0.06 75 0 0 44 0 0.00 MAPK8IP1 9479 mdanderson.org 37 11 45924975 45924975 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_005456 exon6 c.C1477T p.H493Y CAGACCCACCGGG 18 3 0.17 48 0 0 127 0 0.00 LRP4 4038 broad.mit.edu 37 11 46924405 46924405 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . LRP4 NM_002334 exon2 c.C128A p.T43N ATGCAGGTACACT 131 4 0.03 232 0 0 160 17 0 0.00 SLC3A2 6520 mdanderson.org 37 11 62648706 62648706 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001012662 exon4 c.G517T p.V173L CTGAAGGTGGCAG 46 4 0.09 70 0 0 325 0 0.00 ANKRD42 338699 mdanderson.org 37 11 82922394 82922394 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_182603 exon5 c.G424T p.G142W TTTCATGGGCGGC 55 4 0.07 114 0 0 8 0 0.00 GRM5 2915 broad.mit.edu 37 11 88742239 88742239 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . GRM5 . . . . CTCTTACGCATCT 204 6 0.03 426 0 0 414 0 0 SIK3 23387 mdanderson.org 37 11 116718216 116718216 + Nonsense_Mutation SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_025164 exon22 c.C3610T p.Q1204X GAAACTGCTGGCT 52 4 0.08 99 0 0 55 0 0.00 FBXL14 144699 broad.mit.edu 37 12 1703090 1703090 + Missense_Mutation SNP A A C novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . FBXL14 NM_152441 exon1 c.T143G p.V48G GCCTCCACCCCCC 44 30 0.68 22 11 0.5 19 75 30 0.40 HSD17B6 8630 mdanderson.org 37 12 57178677 57178677 + Nonsense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_003725 exon4 c.G613T p.E205X ATAGTTGAACCTG 92 5 0.05 105 0 0 23 0 0.00 FOXN4 121643 ucsc.edu 37 12 109724470 109724470 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . FOXN4 NM_213596 exon7 c.C676A p.H226N GGAAGTGCTCCTT 40 4 0.10 42 0 0 74 0 0 SETD1B 23067 mdanderson.org 37 12 122265972 122265972 + Missense_Mutation SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_015048 exon16 c.G5594A p.C1865Y ACAGCTGCAACGT 43 3 0.07 87 0 0 108 0 0.00 LATS2 26524 mdanderson.org 37 13 21563351 21563351 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 LATS2_ENST00000382592,NS,carcinoma,+1,2 LATS2_ENST00000382592 NM_014572 exon4 c.C568A p.P190T CGTAGGGGGTACC 45 3 0.07 72 0 0 1 2 6 0 0.00 ATP12A 479 mdanderson.org 37 13 25265283 25265283 + Silent SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001185085 exon8 c.C981T p.F327F CCTTTTCTTCATC 48 5 0.10 84 6 0.0714285714 47 1 0.02 . 0 broad.mit.edu 37 13 82265134 82265134 + RNA DEL T T - novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . TGTTTATTTTTTT 121 7 0.06 162 0 0 482 0 0.00 IRS2 8660 mdanderson.org 37 13 110436262 110436262 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_003749 exon1 c.C2139A p.T713T CGCAGAGGTGGGT 43 3 0.07 44 0 0 1 0 0.00 ADPRHL1 113622 mdanderson.org 37 13 114083363 114083363 + Missense_Mutation SNP C C T rs377658823 TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_138430 exon4 c.G550A p.A184T CTTGTGCGGCGAA 37 3 0.08 62 0 0 7 0 0.00 MLH3 27030 hgsc.bcm.edu 37 14 75514926 75514926 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_014381 exon2 c.C1433A p.A478E TCTGATGCTACAA 93 4 0.04 137 0 0 6 0 0.00 FLVCR2 55640 mdanderson.org 37 14 76045333 76045333 + Silent SNP C C A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_017791 exon1 c.C18A p.P6P AGGTCCCAACCAG 49 3 0.06 59 0 0 15 0 0.00 SYNE3 161176 mdanderson.org 37 14 95921773 95921773 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_152592 exon5 c.C1078A p.Q360K CAGGCTGCAGGCC 45 3 0.07 70 0 0 1 0 0.00 PLCB2 5330 mdanderson.org 37 15 40580988 40580988 + Nonsense_Mutation SNP G G T rs61755439 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_004573 exon32 c.C3486A p.C1162X GCACTCGCAGGCC 73 4 0.05 94 0 0 51 0 0.00 LMAN1L 79748 bcgsc.ca;mdanderson.org 37 15 75112999 75112999 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . LMAN1L NM_021819 exon8 c.G798T p.E266D CCTGGAGATGCAG 75 5 0.07 67 0 0 43 0 0 FAHD1 81889 mdanderson.org 37 16 1877842 1877842 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_031208 exon1 c.G612T p.E204D CGATGAGATCGAG 107 5 0.05 164 0 0 56 0 0.00 FBXL19 54620 mdanderson.org 37 16 30939251 30939251 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001099784 exon5 c.G654T p.E218D AAGGGAGGCAGGG 27 3 0.11 39 0 0 31 0 0.00 ZNF646 9726 mdanderson.org 37 16 31088604 31088604 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_014699 exon2 c.G959T p.R320M GTGAAAGGCAGGA 50 3 0.06 82 0 0 17 0 0.00 . 0 broad.mit.edu 37 16 32070612 32070612 + RNA SNP A A C rs368458790 bycluster TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . TCCTGCAAGGCTT 27 5 0.19 43 1 0.023255814 0 0 . 440348 broad.mit.edu;mdanderson.org 37 16 74425946 74425946 + Nonsense_Mutation SNP C C T rs369331764 TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 NPIPL2_ENST00000429990,NS,carcinoma,0,2 . . . . . AAAAAACAAAACA 42 6 0.14 48 1 0.0208333333 2 6 0 0.00 ZNF469 84627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 88501926 88501926 + Missense_Mutation SNP G G C novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001127464 exon2 c.G7964C p.G2655A TGGAAGGAGGGCC 17 8 0.47 36 0 0 0 0 NLE1 54475 mdanderson.org 37 17 33469134 33469134 + Missense_Mutation SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_018096 exon2 c.C26T p.A9V GCCACCGCCTCGT 27 3 0.11 54 0 0 9 0 0.00 SRCIN1 80725 mdanderson.org 37 17 36714529 36714529 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_025248 exon11 c.G2135A p.R712H AGGGTGCGCTGCC 26 2 0.08 51 1 0.0196078431 3 0 0.00 RPL19 6143 hgsc.bcm.edu 37 17 37360424 37360424 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 RPL19,NS,carcinoma,-1,1 RPL19 NM_000981 exon5 c.C451T p.R151C AAGGCCCGCAAGA 31 2 0.06 27 1 0.037037037 -1 1 14796 15 0.00 KRT33A 3883 mdanderson.org 37 17 39507011 39507011 + Nonsense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_004138 exon1 c.C9A p.Y3X ACAACTGTAAGAC 44 3 0.07 53 0 0 0 0 KANSL1 284058 hgsc.bcm.edu;broad.mit.edu 37 17 44109654 44109662 + In_Frame_Del DEL GACCTGTAG GACCTGTAG - novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 GACCTGTAG GACCTGTAG Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001193466 exon14 c.2842_2850del p.948_950del TCTGATGACCTGT 29 11 0.38 21 0 0 171 0 0.00 ABCA9 10350 mdanderson.org 37 17 66992072 66992072 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 ABCA9,NS,malignant_melanoma,-2,2 ABCA9 NM_080283 exon26 c.C3519A p.P1173P TGTGAAGGGAGGT 56 3 0.05 43 0 0 -2 2 2 0 0.00 MAP2K2 5605 mdanderson.org 37 19 4110627 4110627 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_030662 exon3 c.C330A p.A110A CCGGATGGCCGGC 46 3 0.07 50 0 0 622 0 0.00 LRG1 116844 mdanderson.org 37 19 4538473 4538473 + Missense_Mutation SNP G G T rs200192398 by1000genomes;alternate_allele TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 LRG1,colon,carcinoma,+1,1 LRG1 NM_052972 exon2 c.C523A p.R175S GGAGGCGGTTCCC 44 3 0.07 64 0 0 1 1 13 0 0.00 PLIN3 10226 hgsc.bcm.edu 37 19 4859920 4859920 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 PLIN3,bladder,carcinoma,-2,1 PLIN3 NM_001164189 exon3 c.C183A p.D61E TGCTGCGTCGCAG 97 4 0.04 110 0 0 -2 1 178 0 0.00 ZNF564 163050 broad.mit.edu 37 19 12637879 12637879 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . ZNF564 NM_144976 exon4 c.C1043A p.S348Y CTGGAAGAACTGA 95 4 0.04 126 0 0 55 42 0 0.00 ZNF676 163223 ucsc.edu 37 19 22363172 22363172 + Silent SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . ZNF676 NM_001001411 exon3 c.C1347T p.Y449Y ACATTTGTAGGGT 75 5 0.07 55 3 0.0545454545 146 125 16 0.13 MAG 4099 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 35790585 35790585 + Nonsense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_080600 exon5 c.G544T p.E182X CTGGGGGAGCCCG 41 8 0.20 41 0 0 0 0 RYR1 6261 mdanderson.org 37 19 38958374 38958374 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001042723 exon25 c.G3303T p.V1101V GCGCGTGGGCTGG 46 3 0.07 51 0 0 4 1 0.25 LIPE 3991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 42912431 42912431 + Missense_Mutation SNP C C A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_005357 exon3 c.G1463T p.G488V ACCAGCCCAATGG 102 27 0.26 129 0 0 112 31 0.28 ZNF233 353355 ucsc.edu 37 19 44778238 44778238 + Silent SNP T T C novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . ZNF233 NM_001207005 exon5 c.T1425C p.T475T CCACACTGGAGAG 82 1 0.01 72 0 0 73 29 5 0.17 ZNF671 79891 broad.mit.edu 37 19 58232944 58232944 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 ZNF671,NS,carcinoma,0,1 ZNF671 NM_024833 exon4 c.C510A p.G170G TATTGGGCCACAT 188 4 0.02 183 0 0 55 1 11 0 0.00 OSR1 130497 broad.mit.edu 37 2 19553461 19553461 + Missense_Mutation SNP C C G novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . OSR1 NM_145260 exon2 c.G106C p.D36H GATGGTCCGAAGG 101 3 0.03 126 0 0 29 0 0 ASXL2 55252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25976403 25976403 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 ASXL2_ENST00000435504,NS,carcinoma,0,2 ASXL2_ENST00000435504 NM_018263 exon10 c.G1142A p.S381N TATTACCTCTGCC 81 14 0.17 132 0 0 0 2 3 0 0.00 ASPRV1 151516 mdanderson.org 37 2 70187846 70187846 + Silent SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_152792 exon1 c.G975A p.L325L GAGCTCCAGGTCA 55 3 0.05 63 0 0 3 0 0.00 . 0 broad.mit.edu 37 2 91887904 91887905 + RNA INS - - T rs369805878 alternate_allele TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . ATTTTCCATTTTT 141 20 0.14 174 8 0.0459770115 0 0 RGPD4 285190 hgsc.bcm.edu;broad.mit.edu 37 2 108488726 108488726 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 RGPD4,right_upper_lobe,carcinoma,+2,1 RGPD4 NM_182588 exon20 c.G4266T p.G1422G GAAAGGGACAGAA 91 19 0.21 128 0 0 2 1 0 0 STAT1 6772 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 191843624 191843624 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_007315 exon21 c.G1831A p.A611T TGATGGCCCCTTC 66 15 0.23 88 0 0 227 3 0.01 GAL3ST2 64090 mdanderson.org 37 2 242738496 242738496 + Missense_Mutation SNP C C A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 GAL3ST2,NS,carcinoma,0,1 GAL3ST2 NM_022134 exon2 c.C46A p.L16I GTCATCCTCCTCC 61 4 0.07 68 0 0 0 1 0 0 UQCC 55245 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 20 33891797 33891797 + Nonsense_Mutation SNP T T A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 UQCC,NS,carcinoma,+1,1 UQCC NM_018244 exon10 c.A841T p.K281X GATTCTTCTCCAC 135 30 0.22 156 0 0 1 1 57 15 0.26 SOGA1 140710 broad.mit.edu 37 20 35443918 35443918 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 SOGA1_ENST00000237536,bladder,carcinoma,+1,4 SOGA1 NM_080627 exon5 c.C1927A p.R643R AGAGTCGGACCGC 60 3 0.05 68 0 0 136 4 12 0 0.00 DOPEY2 9980 broad.mit.edu 37 21 37609660 37609660 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 DOPEY2,NS,carcinoma,0,1 DOPEY2 NM_005128 exon16 c.C2723T p.T908M CCCCTACGGCCAA 98 4 0.04 98 0 0 184 1 27 0 0.00 ITGB2 3689 mdanderson.org 37 21 46308741 46308741 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001127491 exon14 c.C1947A p.G649G CTGCAGGCCCGGA 38 3 0.08 33 0 0 617 0 0.00 IL17RA 23765 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 17589771 17589771 + Silent SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . IL17RA NM_014339 exon13 c.G1662A p.S554S GCTGTCGGGGGAC 60 11 0.18 66 1 0.0151515152 62 47 9 0.19 . 29801 bcgsc.ca 37 22 20117004 20117004 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . GTGCTGCGGGAAG 29 4 0.14 27 0 0 0 0 CCDC157 550631 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 22 30771567 30771567 + Missense_Mutation SNP G G A rs368250287 TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001017437 exon10 c.G1772A p.R591H ACATCCGCATCCG 97 5 0.05 107 0 0 19 0 0.00 GGA1 26088 broad.mit.edu 37 22 38027039 38027039 + Silent SNP G G T rs138927569 alternate_allele TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 GGA1,NS,carcinoma,+1,1 GGA1 NM_013365 exon14 c.G1461T p.P487P GCCTCCGCAGCAG 111 5 0.05 120 0 0 39 1 309 0 0.00 MKL1 57591 mdanderson.org 37 22 40815349 40815349 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_020831 exon12 c.C1093A p.P365T AGACAGGCAGTGA 47 3 0.06 60 0 0 52 0 0.00 TOPAZ1 375337 broad.mit.edu 37 3 44285524 44285524 + Missense_Mutation SNP A A G novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001145030 exon2 c.A1526G p.K509R GGAAAAAGGCTTC 130 3 0.02 186 0 0 0 0 KLHL18 23276 mdanderson.org 37 3 47374795 47374795 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_025010 exon5 c.G749T p.C250F GTTGCTGCCACAA 43 3 0.07 56 0 0 52 0 0.00 NCKIPSD 51517 mdanderson.org 37 3 48719045 48719045 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_016453 exon5 c.C767A p.S256Y ACTTGGGACACGG 71 4 0.06 86 0 0 127 0 0.00 MCM2 4171 broad.mit.edu 37 3 127323901 127323901 + Missense_Mutation SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . MCM2 NM_004526 exon4 c.G575A p.R192Q GCCCCCGGCTGGA 161 4 0.02 181 1 0.0055248619 79 165 2 0.01 TRH 7200 mdanderson.org 37 3 129695840 129695840 + Silent SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 TRH,right_upper_lobe,carcinoma,0,2 TRH NM_007117 exon3 c.G510A p.E170E AGAAGAGGAGGAG 52 3 0.06 73 0 0 0 2 33 0 0.00 CHST2 9435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 142840363 142840363 + Silent SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_004267 exon2 c.C705T p.S235S GTATAGCCCCGCG 93 20 0.22 111 0 0 282 89 0.32 DCUN1D1 54165 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 182665069 182665069 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_020640 exon6 c.C657A p.F219L CGTACTGAAGTCT 184 18 0.10 82 0 0 272 33 0.12 MUC4 4585 broad.mit.edu 37 3 195505783 195505783 + Missense_Mutation SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 MUC4_ENST00000463781,NS,neuroblastoma,+1,1 MUC4 NM_018406 exon2 c.C12668T p.T4223I AGAGGGGTGGCGT 285 7 0.02 121 1 0.0082644628 1505 1 42 1 0.02 MUC4 4585 bcgsc.ca;mdanderson.org 37 3 195506559 195506559 + Silent SNP A A G novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . MUC4 NM_018406 exon2 c.T11892C p.G3964G GGCGTGACCTGTG 87 12 0.14 112 2 0.0178571429 1505 17 3 0.18 MUC4 4585 hgsc.bcm.edu 37 3 195506626 195506626 + Missense_Mutation SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 MUC4_ENST00000463781,NS,carcinoma,-1,3 MUC4_ENST00000463781 NM_018406 exon2 c.C11825T p.T3942I GAGGAAGTGCTGG 128 6 0.05 190 1 0.0052631579 -1 3 22 0 0.00 MUC4 4585 hgsc.bcm.edu 37 3 195506986 195506986 + Missense_Mutation SNP G G C novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 MUC4_ENST00000463781,extremity,malignant_melanoma,-1,2 MUC4_ENST00000463781 NM_018406 exon2 c.C11465G p.T3822S GGGGTGGTGTCAC 69 3 0.04 62 1 0.0161290323 -1 2 15 0 0.00 MUC4 4585 broad.mit.edu 37 3 195509580 195509580 + Missense_Mutation SNP G G C rs78985720 alternate_allele TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . MUC4 NM_018406 exon2 c.C8871G p.H2957Q GGTGGCGTGACCT 146 4 0.03 65 0 0 1505 49 0 0.00 MUC4 4585 bcgsc.ca 37 3 195510020 195510020 + Missense_Mutation SNP T T A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . MUC4 NM_018406 exon2 c.A8431T p.T2811S GACCTGTGGACAC 88 13 0.15 115 1 0.0086956522 1505 7 0 0.00 LRRC33 375387 broad.mit.edu 37 3 196386681 196386681 + Missense_Mutation SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 LRRC33,NS,carcinoma,-1,1 LRRC33 NM_198565 exon3 c.C167T p.P56L GCCTCCCGCCCCA 427 7 0.02 227 0 0 91 1 47 0 0.00 MEF2C 4208 broad.mit.edu 37 5 88024334 88024334 + Missense_Mutation SNP G G T rs17852408 TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . MEF2C NM_001193347 exon11 c.C1106A p.P369Q GATGGTGGCATGT 247 4 0.02 328 0 0 184 1 0 0.00 ANKHD1 54882 hgsc.bcm.edu 37 5 139887489 139887489 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 ANKHD1_ENST00000261805,colon,carcinoma,+1,3 ANKHD1_ENST00000261805 NM_017747 exon20 c.G3671T p.R1224L CCAATCGGAACAC 115 5 0.04 145 0 0 1 3 57 0 0.00 PCDHA6 0 broad.mit.edu 37 5 140209500 140209500 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 PCDHA6_ENST00000529310,NS,carcinoma,+1,6 PCDHA6 NM_018909 exon1 c.G1824T p.S608S GCTTTCGTATGAG 57 3 0.05 76 0 0 442 6 0 0 PTK7 5754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43100169 43100169 + Silent SNP C C T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001270398 exon7 c.C996T p.D332D TGAAGACATGCCG 128 27 0.21 123 0 0 168 61 0.36 PHKG1 5260 mdanderson.org 37 7 56149324 56149324 + Missense_Mutation SNP T T A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001258459 exon10 c.A1013T p.K338M AGTACCTTGAACT 21 2 0.10 50 0 0 1 0 0.00 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . CCGGGGTCCTTGA 178 6 0.03 120 1 0.0083333333 0 0 FAM185A 222234 broad.mit.edu 37 7 102401776 102401776 + Silent SNP T T G rs2537454 TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . FAM185A NM_001145268 exon4 c.T711G p.G237G AGATGGTTTGCTG 536 5 0.01 452 0 0 10 21 0 0.00 KIAA1549 57670 mdanderson.org 37 7 138555928 138555928 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_001164665 exon13 c.C4526A p.A1509E CTTTCCGCCACTC 33 3 0.09 24 0 0 24 0 0.00 SSPO 23145 mdanderson.org 37 7 149500591 149500591 + Silent SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_198455 exon54 c.G7992T p.L2664L CCTTCTGCATGAC 44 4 0.09 104 0 0 0 0 . 0 broad.mit.edu 37 8 30210434 30210434 + RNA SNP A A C novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . CCTGTGACCCCCG 44 9 0.20 52 6 0.1153846154 5 1 0.20 DENND3 22898 mdanderson.org 37 8 142200511 142200511 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_014957 exon20 c.G3134T p.W1045L GCCTGTGGTGCTG 34 3 0.09 49 0 0 24 0 0.00 ADCK5 203054 mdanderson.org 37 8 145616415 145616415 + Missense_Mutation SNP G G T novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_174922 exon6 c.G625T p.A209S GCTGCCGCCAGCC 50 3 0.06 61 0 0 75 1 0.01 ZNF462 58499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 109689998 109689998 + Missense_Mutation SNP C C A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_021224 exon3 c.C3805A p.Q1269K TGTAGGCAGTGCT 80 57 0.71 60 0 0 3 3 1.00 TMEM245 23731 mdanderson.org 37 9 111881924 111881924 + Silent SNP G G A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_032012 exon1 c.C270T p.C90C AGTGCCGCATAGC 42 3 0.07 36 0 0 17 0 0.00 C9orf171 389799 broad.mit.edu 37 9 135447890 135447890 + Missense_Mutation SNP A A C novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 C9orf171,right_upper_lobe,carcinoma,0,1 C9orf171 NM_207417 exon7 c.A956C p.H319P ACACCCACCCCTA 47 12 0.26 32 6 0.1875 53 1 0 0 SLC34A3 142680 mdanderson.org 37 9 140128920 140128920 + Silent SNP C C A novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . NM_080877 exon11 c.C1146A p.G382G CGCGGGCGCCGGC 23 2 0.09 29 0 0 1 0 0.00 SSX6 280657 hgsc.bcm.edu 37 X 47969832 47969832 + RNA SNP T T G novel TCGA-XE-AANJ-01A-11D-A435-10 TCGA-XE-AANJ-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq a43cd317-9fe6-401e-971c-f82498898d79 c84ec2ea-8d3d-4b69-a6eb-e4d3ac9e0e18 . . . . . . CCTAGTTGAGTCA 233 21 0.09 224 0 0 0 0