Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	TVaf_SOL	NTotCov_SOL	NVarCov_SOL	NVaf_SOL	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	Ttot_rna	Tvar_rna	Tvaf_rna	note	germline-maf-frequency	IGV
PUM1	9698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	31441219	31441219	+	Silent	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PUM1	NM_014676	exon11	c.C1627T	p.L543L	CTGCCAGACCTTG		95	13	0.14	129	1	0.007751938		107		8	3	0.38			
NOTCH2	4853	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120468323	120468323	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	NOTCH2	NM_024408	exon25	c.G4116A	p.R1372R	GCAGTCCCGGGGA		126	25	0.20	149	1	0.0067114094		348		3	0	0.00			
.	0	broad.mit.edu	37	1	143195473	143195473	+	RNA	DEL	A	A	-	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	AAAAGCAAAAAAA		10	3	0.30	9	0	0				1	0	0.00			
MRPL9	51686	broad.mit.edu	37	1	151735988	151735988	+	Silent	SNP	A	A	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	MRPL9	.	.	.	.	GGGAGGACCCCGG		58	18	0.31	82	16	0.1951219512		21		1	0	0.00			
NME7	29922	broad.mit.edu	37	1	169272390	169272390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	NME7,NS,carcinoma,0,1	NME7	NM_013330	exon5	c.T433C	p.F145L	TGAAAAAGGGTCT		522	6	0.01	474	0	0		34	1	19	0	0.00			
FMOD	2331	broad.mit.edu	37	1	203317121	203317121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	FMOD	NM_002023	exon2	c.A278G	p.D93G	CGATTGTCACAGT		133	3	0.02	141	0	0		49		5	0	0.00			
IKBKE	9641	mdanderson.org	37	1	206651589	206651589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_014002	exon9	c.C899T	p.A300V	TCTTTGCGGAGAC		53	3	0.06	72	0	0				11	0	0.00			
CR1	1378	broad.mit.edu	37	1	207751172	207751172	+	Silent	SNP	A	A	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	CR1_ENST00000367049,NS,carcinoma,+2,2	CR1	NM_000651	exon29	c.A4560C	p.P1520P	ACCCCCAACCATC		487	4	0.01	526	0	0		354	2	0	0				
NVL	4931	hgsc.bcm.edu	37	1	224514122	224514122	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001243147	exon2	c.C102A	p.V34V	CGCTAAGACTCCA		94	5	0.05	125	0	0				7	0	0.00			
OBSCN	84033	broad.mit.edu;mdanderson.org	37	1	228505368	228505368	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	OBSCN	NM_001271223	exon63	c.G16636C	p.G5546R	GCCCCCGGGGAGA		54	4	0.07	69	0	0		2142		1	0	0.00			
FMN2	56776	mdanderson.org	37	1	240256211	240256211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_020066	exon1	c.G802T	p.D268Y	AGTCCGGACACCG		9	2	0.22	14	0	0				6	2	0.33			
PRKCDBP	112464	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6340567	6340567	+	Silent	SNP	G	G	T	rs144522181	bycluster;byfrequency;alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PRKCDBP	NM_145040	exon2	c.C612A	p.P204P	CGGGGTGGGCGGT		46	5	0.11	59	0	0		19		38	0	0.00			
MRPL17	63875	mdanderson.org	37	11	6703420	6703420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_022061	exon3	c.C457T	p.R153W	CCTGCCGCAAACC		132	5	0.04	172	0	0				855	2	0.00			
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	66948811	66948811	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_012308	exon4	c.C202T	p.Q68X	TATATTCAGCGGG		99	19	0.19	143	0	0				5	1	0.20			
MRGPRF	116535	mdanderson.org	37	11	68772840	68772840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001098515	exon3	c.C938A	p.A313D	CGCAGGGCCCGCT		18	3	0.17	28	0	0				2	0	0.00			
.	0	bcgsc.ca	37	12	9659703	9659703	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TCCTTATAAGTAC		73	12	0.16	73	0	0				0	0				
PRH1-PRR4	0	hgsc.bcm.edu	37	12	11182975	11182975	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TTCTGCTAGAAGA		306	32	0.10	270	0	0				2	0	0.00			
GPR19	2842	broad.mit.edu	37	12	12815307	12815307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	GPR19,NS,carcinoma,+1,1	GPR19	NM_006143	exon4	c.C76A	p.R26S	AGCTGCGGTTTTG		201	4	0.02	147	0	0		47	1	6	0	0.00			
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15722430	15722430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_030667	exon19	c.G2827C	p.E943Q	CAGTTTGAGGTGA		1415	137	0.10	1236	1	0.0008090615				0	0				
SOCS2	8835	mdanderson.org	37	12	93966744	93966744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001270469	exon2	c.G71T	p.G24V	CCGCGGGGTCGGC		51	3	0.06	37	0	0				19	0	0.00			
NCOR2	9612	hgsc.bcm.edu;mdanderson.org	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	NCOR2_ENST00000405201,NS,carcinoma,0,11	NCOR2_ENST00000405201	NM_006312	exon16	c.G1497A	p.Q499Q	CTGCTGCTGTTGT		46	5	0.11	69	1	0.0144927536		0	11	0	0				
SUPT20H	55578	broad.mit.edu	37	13	37614740	37614740	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_017569	exon8	c.G489A	p.R163R	AATGTGCCGACTT		404	6	0.01	536	1	0.0018656716				40	0	0.00			
TRIM13	10206	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	50589360	50589360	+	RNA	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TCTTCAGATATAT		81	17	0.21	128	0	0				2	0	0.00			
.	144	bcgsc.ca	37	13	111589523	111589523	+	RNA	SNP	A	A	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	GCGCCTATCCAAG		41	8	0.20	72	0	0				0	0				
ADAM21	8747	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	70925910	70925910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003813	exon2	c.G1694A	p.C565Y	TTCAATGTGAGAA		193	35	0.18	268	0	0				0	0				
ACOT4	122970	broad.mit.edu	37	14	74059005	74059005	+	Silent	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ACOT4	NM_152331	exon1	c.C342G	p.P114P	CGACCCCGAGCCT		37	4	0.11	41	1	0.0243902439		25		0	0				
SNW1	22938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78197400	78197400	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_012245	exon10	c.G964C	p.E322Q	GTTTCTCTTCATG		85	16	0.19	127	0	0				303	103	0.34			
RPS6KA5	9252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91366534	91366534	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_182398	exon11	c.G1297C	p.G433R	CTTCTCCCAGGGG		134	21	0.16	169	0	0				11	3	0.27			
RNU6-28	100873756	hgsc.bcm.edu	37	15	43739017	43739017	+	RNA	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	ACAAAGGATGCTG		67	8	0.12	83	0	0				1	0	0.00			
.	0	broad.mit.edu	37	15	91577398	91577398	+	RNA	DEL	G	G	-	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	GCTGCCGGTTCAG		11	4	0.36	5	0	0				0	0				
FAM173A	65990	mdanderson.org	37	16	771876	771876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_023933	exon3	c.C343T	p.R115W	CTGGCGCGGCTGC		12	2	0.17	21	0	0				61	1	0.02			
ABCC6P1	0	broad.mit.edu	37	16	18603964	18603964	+	RNA	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TTTGAGCAGCAGA		221	5	0.02	309	0	0				0	0				
CD2BP2	10421	ucsc.edu	37	16	30365078	30365078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	CD2BP2	NM_006110	exon5	c.A419G	p.D140G	TCCGAGTCTGAGG		24	3	0.13	39	0	0		30		137	35	0.26			
EMC8	10328	ucsc.edu;bcgsc.ca	37	16	85814060	85814060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_006067	exon4	c.C398A	p.T133K	TCCATCGTAAACT		39	4	0.10	63	0	0				94	0	0.00			
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4863123	4863123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_004890	exon6	c.A506G	p.H169R	ATGAGGTGGCTGT		56	13	0.23	82	0	0				413	125	0.30			
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28382962	28382962	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_198529	exon11	c.A2251C	p.I751L	CAAAAAATAGAAG		116	21	0.18	187	0	0				0	0				
LIG3	3980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33310332	33310332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_013975	exon2	c.C308T	p.A103V	GCACAGCTGGCTG		136	20	0.15	189	0	0				6	0	0.00			
MRPL45P2	0	broad.mit.edu	37	17	45559946	45559947	+	RNA	INS	-	-	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	AAAAAATAAAAAA		12	4	0.33	4	0	0				0	0				
ARSG	22901	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66339899	66339899	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ARSG	NM_001267727	exon3	c.C373G	p.L125V	GAGGTGCTGCAGC		68	11	0.16	93	1	0.0107526882		55		3	0	0.00			
REXO1	57455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	1826917	1826917	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_020695	exon2	c.C1871G	p.T624S	ACGCTGGTGGACT		176	27	0.15	278	0	0				30	5	0.17			
ATCAY	85300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3905468	3905468	+	Missense_Mutation	SNP	G	G	T	rs199662587	alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ATCAY	NM_033064	exon4	c.G173T	p.R58L	CGCATCGTAAGAG		101	12	0.12	155	1	0.0064516129		84		1	1	1.00			
ICAM5	7087	mdanderson.org	37	19	10407206	10407206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003259	exon11	c.G2689T	p.A897S	GCAGGCGCGGAGG		21	3	0.14	11	0	0				0	0				
NWD1	284434	mdanderson.org	37	19	16860654	16860654	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001007525	exon6	c.T1201C	p.L401L	CTGCCCTTGCCCC		57	3	0.05	97	0	0				0	0				
ZNF536	9745	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31040045	31040045	+	Silent	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ZNF536	NM_014717	exon4	c.C3519A	p.S1173S	CTCCTCCAAGGGG		103	13	0.13	127	1	0.0078740157		424		1	0	0.00			
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36224181	36224181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_014727	exon28	c.C6731G	p.P2244R	TGCTGCCCGTGGT		65	14	0.22	94	0	0				23	4	0.17			
ARHGAP33	115703	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	36278481	36278481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ARHGAP33	NM_052948	exon21	c.C2531T	p.A844V	TCAGGGCAGGTGG		46	4	0.09	97	0	0		102		17	4	0.24			
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41354213	41354213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	CYP2A6	NM_000762	exon4	c.566delA	p.D189fs	AGCGGTCCCCAAA		130	22	0.17	150	0	0		69		0	0				
LOC100996307	0	broad.mit.edu	37	19	43136362	43136363	+	RNA	DEL	TG	TG	-	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	TG	TG					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TATGTATGTGTGT		6	2	0.33	4	0	0				0	0				
ZNF233	353355	ucsc.edu	37	19	44778739	44778739	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic		RNA-Seq	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ZNF233	NM_001207005	exon5	c.T1926C	p.H642H	AGTCCATACTGGA		144	1	0.01	174	0	0		73		34	4	0.12			
LENG9	94059	mdanderson.org	37	19	54974255	54974255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_198988	exon1	c.C521T	p.A174V	CGTCCCGCCGCCG		23	3	0.13	12	0	0				2	0	0.00			
ZSCAN22	342945	mdanderson.org	37	19	58846207	58846207	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_181846	exon2	c.G39A	p.W13X	GCCGTGGGAAGAG		36	3	0.08	41	0	0				0	0				
GAREML	150946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26410715	26410715	+	Silent	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001168241	exon6	c.C2214T	p.G738G	ACTTGGCCCCTCC		90	13	0.14	139	0	0				7	1	0.14			
AFTPH	54812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	64778749	64778749	+	Missense_Mutation	SNP	C	C	A	rs113401509	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	AFTPH_ENST00000238855,NS,carcinoma,0,2	AFTPH_ENST00000238855	NM_017657	exon2	c.C141A	p.F47L	TGATTTCGATACA		185	18	0.10	221	0	0	0.001	0	2	2	0	0.00			
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72968493	72968493	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015189	exon2	c.G219C	p.Q73H	AAAGCCCTGGTAA		171	37	0.22	171	0	0				3	1	0.33			
ANKRD20A8P	0	broad.mit.edu	37	2	95514650	95514651	+	RNA	INS	-	-	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	CCATCTCAAAAAA		11	3	0.27	6	0	0				0	0				
HS6ST1	9394	broad.mit.edu	37	2	129025861	129025861	+	Missense_Mutation	SNP	G	G	A	rs372735853		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	HS6ST1,NS,carcinoma,+1,2	HS6ST1	NM_004807	exon2	c.C1111T	p.R371C	TCAGGCGCTGCTC		123	3	0.02	201	0	0		31	2	4	0	0.00			
SDPR	8436	broad.mit.edu	37	2	192700837	192700837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	SDPR	NM_004657	exon2	c.A1090G	p.S364G	AGTTACTCCCCCT		188	5	0.03	178	1	0.0056179775		67		8	0	0.00			
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207432037	207432037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003812	exon15	c.G1485T	p.R495S	CAACAGGCCAACA		162	21	0.13	115	0	0				56	9	0.16			
THAP4	51078	mdanderson.org	37	2	242545856	242545856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015963	exon3	c.C1273A	p.L425M	AGGACAGTGGCTC		41	3	0.07	78	0	0				119	1	0.01			
NRSN2	80023	mdanderson.org	37	20	330397	330397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_024958	exon3	c.C110T	p.A37V	ACTGTGCAGGCAC		37	3	0.08	46	0	0				61	0	0.00			
ASXL1	171023	mdanderson.org	37	20	31021114	31021114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015338	exon11	c.G1113T	p.L371F	GTCATTGCAGCAG		56	3	0.05	69	0	0				9	0	0.00			
NNAT	4826	bcgsc.ca	37	20	36151139	36151139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	NNAT	NM_005386	exon3	c.G224A	p.R75H	GGGAGCGCAGGCA		42	4	0.10	75	0	0		8		116	0	0.00			
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	60921757	60921757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_005560	exon8	c.G1172T	p.G391V	CAGACACCCCCAC		67	8	0.12	95	0	0				0	0				
N6AMT1	29104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	30257631	30257631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_182749	exon1	c.C37T	p.H13Y	CCACGTGCCCGTG		139	15	0.11	145	0	0				28	4	0.14			
CLDN14	23562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37833547	37833547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_144492	exon3	c.C447A	p.N149K	CAGCGGGTTGTAG		72	21	0.29	75	0	0				0	0				
MYO18B	84700	mdanderson.org	37	22	26157088	26157088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_032608	exon2	c.G29T	p.W10L	CCCTGTGGGAGCA		23	2	0.09	35	0	0				0	0				
MN1	4330	mdanderson.org	37	22	28195275	28195275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_002430	exon1	c.G1257A	p.M419I	AGGGTGCATGCTC		16	3	0.19	22	0	0				0	0				
XRCC6	2547	broad.mit.edu	37	22	42059649	42059649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	XRCC6,NS,carcinoma,0,1	XRCC6	NM_001469	exon13	c.A1660G	p.R554G	AGCAAAAGGCCCA		187	4	0.02	284	1	0.0035211268		64	1	6207	2	0.00			
PHF21B	112885	mdanderson.org	37	22	45289362	45289362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_138415	exon7	c.C935T	p.A312V	CTGTAGGCAGGGT		47	3	0.06	55	0	0				0	0				
PTPN23	25930	mdanderson.org	37	3	47453110	47453110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_015466	exon20	c.G3822T	p.W1274C	CTTCTGGCTCATG		40	3	0.08	44	0	0				32	0	0.00			
PSMD6	9861	bcgsc.ca;mdanderson.org	37	3	64008194	64008194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PSMD6	NM_001271779	exon3	c.G310A	p.A104T	AAGGAGCCATGTC		92	5	0.05	126	0	0		30		148	0	0.00			
CTBP1-AS1	92070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	1244599	1244599	+	RNA	SNP	G	G	A	rs1732116	alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TTCCTGGCTCCCG		58	10	0.17	105	0	0				8	3	0.38			
NELFA	7469	broad.mit.edu;bcgsc.ca	37	4	2010671	2010671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_005663	exon1	c.G49A	p.E17K	CGCTCTCCCGCAT		70	13	0.19	91	1	0.010989011				17	9	0.53			
YTHDC1	91746	broad.mit.edu	37	4	69202915	69202915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	YTHDC1	NM_001031732	exon4	c.A713T	p.E238V	TCTTCCTCCTCCT		85	5	0.06	127	1	0.0078740157		81		5	0	0.00			
CYP2U1	113612	mdanderson.org	37	4	108853256	108853256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_183075	exon1	c.G457A	p.V153M	CCGCGGGTGCCGC		33	3	0.09	50	0	0				0	0				
ARRDC3	57561	mdanderson.org	37	5	90667229	90667229	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_020801	exon8	c.C1233A	p.C411X	AGAGGGGCAGGAT		43	3	0.07	62	0	0				6	0	0.00			
.	0	bcgsc.ca	37	5	110283861	110283861	+	RNA	SNP	G	G	A	rs76289261		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	AAGTTAGAGCACC		34	9	0.26	77	4	0.0519480519				0	0				
.	0	bcgsc.ca	37	5	110283865	110283865	+	RNA	SNP	A	A	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TAGAGCACCCTCT		36	10	0.28	81	5	0.0617283951				0	0				
H2AFY	9555	mdanderson.org	37	5	134678955	134678955	+	Silent	SNP	G	G	A	rs149002266	bycluster;byfrequency;by1000genomes	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_138610	exon8	c.C948T	p.S316S	CCTGCCGCTGCCG		35	3	0.09	51	0	0	0.002			470	0	0.00			
CDC25C	995	mdanderson.org	37	5	137622859	137622859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001790	exon11	c.A1025G	p.Q342R	CTCACCTGGATGT		55	3	0.05	80	0	0				28	0	0.00			
ATP10B	23120	mdanderson.org	37	5	160114833	160114833	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_025153	exon5	c.C249A	p.P83P	ATTCCGGGGCAGG		121	5	0.04	210	0	0				0	0				
ABCF1	23	broad.mit.edu	37	6	30557690	30557690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ABCF1	NM_001025091	exon22	c.G2172T	p.K724N	CCGCAAGTGCCTG		60	3	0.05	87	0	0		61		140	0	0.00			
TMEM63B	55362	mdanderson.org	37	6	44114585	44114585	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_018426	exon11	c.G784T	p.E262X	TTCAGGGAAGCCT		78	6	0.08	106	0	0				34	0	0.00			
FAM83B	222584	broad.mit.edu	37	6	54806078	54806078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	FAM83B,right_upper_lobe,carcinoma,0,1	FAM83B	NM_001010872	exon5	c.A2309G	p.K770R	TGAAAAAGGGGTC		166	4	0.02	181	1	0.0055248619		186	1	0	0				
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44555488	44555488	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_013389	exon19	c.T3791A	p.I1264N	AAGAAGATCTGAA		87	14	0.16	108	0	0				0	0				
.	0	bcgsc.ca	37	7	63601979	63601979	+	RNA	SNP	C	C	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	GTAGCCCTGGAGC		82	11	0.13	98	0	0				0	0				
GTF2I	2969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	74105442	74105442	+	Silent	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_032999	exon3	c.T237C	p.Y79Y	AAAATATTGTAAG		235	27	0.11	236	0	0				42	6	0.14			
PVRIG	79037	mdanderson.org	37	7	99818409	99818409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_024070	exon5	c.G623T	p.R208L	CGTCCCGCACCAG		38	3	0.08	40	0	0				58	0	0.00			
DPY19L2P2	349152	hgsc.bcm.edu;broad.mit.edu	37	7	102920486	102920486	+	RNA	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	GCCGCCTAGGGCC		43	5	0.12	41	0	0				2	0	0.00			
MDFIC	29969	broad.mit.edu	37	7	114582420	114582420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	MDFIC,NS,carcinoma,-1,1	MDFIC	NM_199072	exon3	c.G512T	p.W171L	CCATTTGGGGAAA		538	6	0.01	518	1	0.0019305019		30	1	2	0	0.00			
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144406735	144406735	+	Missense_Mutation	SNP	C	C	T	rs200437445	bycluster	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	TOP1MT,right_lower_lobe,carcinoma,0,1	TOP1MT	NM_052963	exon6	c.G736A	p.V246I	ACGTGACGGTGTT		74	8	0.11	87	0	0	0.001	0	1	56	13	0.23			
ZNF251	90987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145948392	145948392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_138367	exon5	c.T653C	p.F218S	TATTTGAAGGTTT		206	27	0.13	215	0	0				10	1	0.10			
HAUS6	54801	broad.mit.edu	37	9	19094323	19094323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	HAUS6	NM_017645	exon3	c.A295G	p.R99G	AAATCCTTTTTAT		544	4	0.01	684	1	0.0014619883		66		5	0	0.00			
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33344183	33344183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_147134	exon14	c.C2341T	p.P781S	GACCATCCAGGTG		120	24	0.20	156	0	0				50	18	0.36			
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	38395924	38395924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_000692	exon2	c.C179A	p.T60N	ACCCTACCACCGG		41	8	0.20	51	0	0				4	0	0.00			
.	0	broad.mit.edu	37	9	67294000	67294001	+	RNA	INS	-	-	TGT	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	-	-					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	TTCAGTCTATTTA		12	3	0.25	6	0	0				0	0				
TMOD1	7111	mdanderson.org	37	9	100325015	100325015	+	Silent	SNP	G	G	T	rs199728770	bycluster;alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001166116	exon5	c.G399T	p.A133A	TGCAGCGATCCTG		53	3	0.06	70	0	0				42	0	0.00			
OR5C1	392391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125551981	125551981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	OR5C1,NS,carcinoma,-1,1	OR5C1	NM_001001923	exon1	c.G770A	p.G257E	TGTACGGGACACT		81	9	0.11	130	1	0.0076923077		-1	1	0	0				
CYTB	4519	broad.mit.edu;bcgsc.ca	37	MT	14895	14895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	T	T					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	ENST00000361789	exon1	c.T149C	p.F50S	GACTATTCCTAGC		37	18	0.49	95	1	0.0105263158				0	0				
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	A	A					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT		394	5	0.01	364	0	0		24		111	0	0.00			
POLA1	5422	broad.mit.edu	37	X	24833115	24833115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	POLA1	NM_016937	exon30	c.C3298T	p.L1100F	CAGATTCTTTCTG		51	20	0.39	53	12	0.2264150943		117		10	0	0.00			
CHDC2	286464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	36162793	36162793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_173695	exon11	c.C1376A	p.T459K	CCAGAACAAAGAG		97	32	0.33	109	0	0				3	1	0.33			
SUV39H1	6839	mdanderson.org	37	X	48564674	48564674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_003173	exon4	c.G847T	p.A283S	GAGGAGGCAGAGC		46	3	0.07	60	0	0				18	0	0.00			
FAM104B	90736	mdanderson.org	37	X	55172645	55172645	+	Missense_Mutation	SNP	C	C	G	rs1047042	bycluster;byfrequency;alternate_allele	TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_001166700	exon3	c.G223C	p.D75H	TTGCATCGGGTTC		23	3	0.13	36	0	0				160	0	0.00			
ARMCX5	64860	broad.mit.edu	37	X	101858297	101858297	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	ARMCX5	NM_022838	exon3	c.C1228T	p.Q410X	CCTGTGCAGCTGG		248	4	0.02	299	0	0		55		83	0	0.00			
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	140994527	140994527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	C	C					Unknown	Untested	Somatic	.	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	NM_005462	exon4	c.C1337T	p.P446L	AGATTCCTGTGAG		234	66	0.28	267	0	0				4	0	0.00			
MAPK8IP2	23542	mdanderson.org	37	22	51039298	51039298	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	GCTGTCGCCGCCG		39	3	0.08	45	0	0				3	0	0.00			
DNM1	1759	mdanderson.org	37	9	130965794	130965794	+	Silent	SNP	G	G	T	novel		TCGA-XE-AAO4-01A-11D-A435-10	TCGA-XE-AAO4-10A-01D-A438-10	G	G					Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b226b1b2-fdac-4e87-9e91-233ce726eb5e	e6598517-60b2-435d-802a-ee3f5101cb12	.	.	.	.	.	.	CAACCGGCTGCAA		33	3	0.09	28	0	0				0	0