Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV C1orf68 100129271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152692487 152692487 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001024679 exon1 c.G490T p.A164S TGCTCTGCTCCCT 176 22 0.13 163 0 0 0 0 MUC6 4588 bcgsc.ca 37 11 1016908 1016908 + Missense_Mutation SNP G G T rs79018624 TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . MUC6 NM_005961 exon31 c.C5893A p.P1965T TGAAGGGTGTGGG 196 8 0.04 314 6 0.0191082803 408 0 0 KCNJ11 3767 mdanderson.org 37 11 17409231 17409231 + Silent SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_000525 exon1 c.C408A p.R136R CACCATGCGCCCC 39 3 0.08 72 0 0 0 0 DGKZ 8525 mdanderson.org 37 11 46400583 46400583 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001105540 exon29 c.G3025T p.D1009Y CACCGAGACGAGC 17 2 0.12 21 0 0 344 0 0.00 C1QTNF4 114900 mdanderson.org 37 11 47612009 47612009 + Silent SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_031909 exon2 c.C354A p.A118A CTGGCTGGCTGCG 15 2 0.13 26 0 0 6 0 0.00 P2RX3 5024 mdanderson.org 37 11 57114905 57114905 + Missense_Mutation SNP G G T rs146469943 bycluster;alternate_allele TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_002559 exon4 c.G344T p.R115L AATACCGCTGTGT 36 3 0.08 39 0 0 1 0 0.00 EEF1G 1937 mdanderson.org 37 11 62341310 62341310 + Missense_Mutation SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001404 exon1 c.C5T p.A2V CCAGCCGCCATGG 22 3 0.14 31 0 0 835 0 0.00 VEGFB 7423 broad.mit.edu 37 11 64005048 64005048 + Missense_Mutation SNP A A C novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . VEGFB NM_001243733 exon6 c.A466C p.T156P CCCCGGACCTGCC 33 10 0.30 31 7 0.2258064516 18 120 6 0.05 SF1 7536 mdanderson.org 37 11 64535590 64535590 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001178030 exon9 c.C1431A p.N477K AGGTGGGTTGTTG 31 3 0.10 31 0 0 619 0 0.00 PDGFD 80310 mdanderson.org 37 11 103814199 103814199 + Nonsense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 PDGFD_ENST00000393158,NS,carcinoma,0,2 PDGFD_ENST00000393158 NM_025208 exon5 c.C753A p.Y251X GTCATGGTATGAC 47 3 0.06 70 0 0 0 2 2 0 0.00 CASP5 838 mdanderson.org 37 11 104874075 104874075 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001136112 exon4 c.G508A p.A170T ATTCTGCTGACTC 43 3 0.07 51 0 0 2 0 0.00 SNX19 399979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 130748342 130748342 + Missense_Mutation SNP G G C novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_014758 exon11 c.C2954G p.S985C CTCTTAGAGTTGC 83 19 0.23 96 0 0 63 14 0.22 KRAS 3845 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 25378561 25378561 + Missense_Mutation SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 KRAS_ENST00000256078,colon,carcinoma,0,137 KRAS_ENST00000256078 NM_004985 exon4 c.C437T p.A146V GTCTTTGCTGATG 97 18 0.19 51 0 0 0 137 197 45 0.23 PPP1R12A 4659 bcgsc.ca;mdanderson.org 37 12 80202290 80202290 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . PPP1R12A NM_002480 exon11 c.C1523A p.T508K TCAGATGTACTGG 111 5 0.05 92 0 0 76 70 0 0.00 CCDC64 92558 mdanderson.org 37 12 120427799 120427799 + Missense_Mutation SNP C C A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_207311 exon1 c.C127A p.L43I GCCGCCCTCATCT 13 2 0.15 19 0 0 3 0 0.00 DACH1 1602 mdanderson.org 37 13 72440446 72440446 + Silent SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_080759 exon1 c.C462T p.S154S ACTACTGCTGCTG 17 2 0.12 37 1 0.027027027 3 0 0.00 SPTB 6710 mdanderson.org 37 14 65260086 65260086 + Silent SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001024858 exon13 c.G2295A p.L765L AGAGAGCAGCCGG 37 3 0.08 34 0 0 3 0 0.00 PTPN21 11099 mdanderson.org 37 14 88945892 88945892 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_007039 exon13 c.G1883A p.R628H GCGTGGCGCGCGG 18 2 0.11 16 0 0 12 0 0.00 CHGA 1113 mdanderson.org 37 14 93397926 93397926 + Silent SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 CHGA,colon,carcinoma,0,2 CHGA NM_001275 exon6 c.G687A p.E229E AGAAGAGGAGGAG 62 4 0.06 62 0 0 0 2 5 1 0.20 OR4N3P 390539 bcgsc.ca 37 15 22413810 22413810 + RNA SNP G G C novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . CTTGTTGTGATGG 137 10 0.07 136 1 0.0073529412 0 0 LTK 4058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 41804958 41804958 + Silent SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 LTK_ENST00000263800,NS,carcinoma,-1,2 LTK_ENST00000263800 NM_001135685 exon3 c.C306T p.A102A CTGCCCGGCGGCC 29 6 0.21 45 0 0 -1 2 1 0 0.00 ZNF646 9726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 31088507 31088507 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_014699 exon2 c.C862T p.H288Y CGACTGCATGCCC 93 17 0.18 110 0 0 39 15 0.38 FBXL8 55336 mdanderson.org 37 16 67197098 67197098 + Missense_Mutation SNP T T C novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_018378 exon3 c.T500C p.L167P ACAGCCTTTTTCT 16 2 0.13 24 1 0.0416666667 5 0 0.00 SMG6 23293 mdanderson.org 37 17 1964855 1964855 + Silent SNP C C A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_017575 exon19 c.G4191T p.V1397V CGCCTTCACACGC 29 3 0.10 37 0 0 67 0 0.00 KRTAP2-4 85294 hgsc.bcm.edu 37 17 39221816 39221816 + Nonsense_Mutation SNP C C T rs200049107 TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 KRTAP2-4,trunk,malignant_melanoma,0,1 KRTAP2-4 NM_033184 exon1 c.G282A p.W94X GGTGGCCCAGCAG 7 3 0.43 11 0 0 0 1 0 0 CDC27 996 hgsc.bcm.edu 37 17 45216150 45216150 + Silent SNP T T C novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 CDC27_ENST00000531206,NS,carcinoma,0,2 CDC27_ENST00000531206 NM_001114091 exon13 c.A1677G p.S559S CAGAACTGAAAGA 49 5 0.10 61 0 0 0 2 83 0 0.00 LAMA3 3909 mdanderson.org 37 18 21427621 21427621 + Silent SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_198129 exon32 c.C4125T p.S1375S GGACAGCGGGCAG 35 3 0.09 41 0 0 1 0 0.00 FBXO15 201456 mdanderson.org 37 18 71793289 71793289 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001142958 exon6 c.C833A p.T278N GATATGGTCAAAT 45 3 0.07 40 0 0 3 0 0.00 ZNF407 55628 broad.mit.edu 37 18 72775488 72775488 + Silent SNP A A G novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . ZNF407 NM_017757 exon8 c.A5811G p.G1937G TGATGGAGCCACC 13 3 0.23 38 1 0.0263157895 231 17 0 0.00 TCF3 6929 mdanderson.org 37 19 1615323 1615323 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_003200 exon18 c.G1783A p.A595T AGACAGCCTGGTG 28 3 0.11 58 0 0 853 0 0.00 ZBTB7A 51341 mdanderson.org 37 19 4055177 4055177 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_015898 exon2 c.C54A p.S18R GATGTCGCTGCTG 39 3 0.08 50 0 0 23 0 0.00 TICAM1 148022 mdanderson.org 37 19 4816391 4816391 + Missense_Mutation SNP A A G novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_182919 exon2 c.T1999C p.S667P CGGGTGAGGCCGT 39 3 0.08 43 0 0 25 0 0.00 ZNF440 126070 broad.mit.edu 37 19 11943326 11943329 + Frame_Shift_Del DEL ACAA ACAA - novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 ACAA ACAA Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . ZNF440 NM_152357 exon4 c.1335_1338del p.445_446del AAGGACACAAACA 68 9 0.13 57 0 0 56 20 0 0.00 FAM32A 26017 broad.mit.edu 37 19 16296279 16296279 + Missense_Mutation SNP A A G novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . FAM32A NM_014077 exon1 c.A26G p.K9R TCCAAAAGGGACC 133 4 0.03 151 1 0.0066225166 6 408 0 0.00 TGFB1 7040 mdanderson.org 37 19 41858943 41858943 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_000660 exon1 c.C7A p.P3T CGGAGGGCGGCAT 8 2 0.25 14 0 0 67 0 0.00 FAM84A 151354 mdanderson.org 37 2 14774516 14774516 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_145175 exon2 c.C413T p.P138L AGCCGCCCGCGCC 30 3 0.10 33 0 0 0 0 SDC1 6382 mdanderson.org 37 2 20403974 20403974 + Missense_Mutation SNP G G T rs2230922 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_002997 exon3 c.C227A p.T76K GGAGACGTGGGAA 12 2 0.17 15 0 0 95 0 0.00 ANKRD36B 57730 broad.mit.edu 37 2 98195765 98195766 + RNA INS - - C rs199664493 TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . CAAGAAATATGCT 6 2 0.33 5 0 0 0 0 CHST10 9486 mdanderson.org 37 2 101014548 101014548 + Missense_Mutation SNP C C A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_004854 exon5 c.G249T p.E83D CAGGCGCTCCATG 46 3 0.07 59 0 0 38 0 0.00 SLC11A1 6556 mdanderson.org 37 2 219257813 219257813 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_000578 exon12 c.C1274T p.S425L ACTTGTCGGGCCT 45 3 0.07 51 1 0.0196078431 0 0 PTPRA 5786 mdanderson.org 37 20 3017924 3017924 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_002836 exon27 c.G2323T p.V775F CACATGGTCCAGA 38 3 0.08 51 0 0 117 0 0.00 RRBP1 6238 ucsc.edu 37 20 17639714 17639714 + Missense_Mutation SNP T T C novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 T T Unknown Untested Somatic RNA-Seq none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . RRBP1 . . . . GCCTTCTTGCCCT 109 1 0.01 181 0 0 157 315 52 0.17 MYH7B 57644 hgsc.bcm.edu;mdanderson.org 37 20 33583281 33583281 + Missense_Mutation SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_020884 exon28 c.G2969A p.R990H GCCGGCGCAAGCT 72 4 0.06 83 0 0 2 0 0.00 HELZ2 85441 mdanderson.org 37 20 62198382 62198382 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001037335 exon7 c.C2329A p.H777N GGTAGTGCCGGGG 41 3 0.07 61 0 0 93 0 0.00 . 0 broad.mit.edu 37 22 18846098 18846098 + RNA SNP G G A rs9306211 bycluster;byfrequency TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . CTCGGCGCTCGAT 126 10 0.08 91 2 0.021978022 10 0 0.00 RASL10A 10633 mdanderson.org 37 22 29709863 29709863 + Silent SNP G G T rs148807115 alternate_allele TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_006477 exon2 c.C333A p.I111I CTCCGCGATGCGC 31 3 0.10 31 0 0 26 0 0.00 ATRIP 84126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 48488478 48488478 + Missense_Mutation SNP G G T rs372906254 alternate_allele TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_130384 exon1 c.G229T p.A77S CCGGCCGCGGCTC 38 5 0.13 35 0 0 25 13 0.52 KIAA2018 205717 ucsc.edu 37 3 113376116 113376116 + Silent SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . KIAA2018 NM_001009899 exon7 c.G4413A p.Q1471Q TTGCTGCTGCTGC 50 8 0.16 60 1 0.0166666667 180 3 0 0.00 DNAJC13 23317 broad.mit.edu 37 3 132172516 132172516 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . DNAJC13 NM_015268 exon8 c.C818T p.A273V ATATTGCAACATT 37 3 0.08 41 0 0 253 49 0 0.00 MCF2L2 23101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 183013184 183013184 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_015078 exon13 c.G1579A p.A527T TGGCTGCCAGTTT 190 63 0.33 181 0 0 12 7 0.58 MUC4 4585 broad.mit.edu 37 3 195515102 195515102 + Missense_Mutation SNP G G C rs199995135 TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 MUC4_ENST00000463781,NS,carcinoma,0,1 MUC4 NM_018406 exon2 c.C3349G p.H1117D TGGTGTGACCTGT 109 4 0.04 149 0 0 1505 1 4 0 0.00 FGFRL1 53834 mdanderson.org 37 4 1018719 1018719 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001004356 exon7 c.G1099T p.A367S CCTGTGGCCTCCT 33 3 0.09 25 0 0 104 0 0.00 GABRG1 2565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 46053563 46053563 + Missense_Mutation SNP C C G novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_173536 exon8 c.G1009C p.V337L CAGAAACAAAGAG 56 6 0.11 66 0 0 0 0 ANKHD1 54882 mdanderson.org 37 5 139781730 139781730 + Missense_Mutation SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 ANKHD1-EIF4EBP3,NS,carcinoma,0,2 ANKHD1-EIF4EBP3 NM_024668 exon1 c.G178A p.G60S AGCAGCGGCGGCG 33 3 0.09 24 0 0 0 2 36 1 0.03 HMGXB3 22993 mdanderson.org 37 5 149417004 149417004 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_014983 exon13 c.G2327T p.S776I CAGCCAGCCGTCT 46 3 0.07 61 1 0.0163934426 74 0 0.00 MDN1 23195 mdanderson.org 37 6 90384205 90384205 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 MDN1,NS,carcinoma,+1,1 MDN1 NM_014611 exon79 c.C12865A p.R4289S GCAGGCGCTCTGT 29 3 0.10 34 0 0 1 1 104 0 0.00 SNX13 23161 broad.mit.edu;mdanderson.org 37 7 17836517 17836517 + Nonsense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . SNX13 NM_015132 exon25 c.C2559A p.C853X ATCTCTGCATGGA 82 4 0.05 48 0 0 113 45 0 0.00 C7orf41 222166 hgsc.bcm.edu 37 7 30185862 30185862 + Missense_Mutation SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_152793 exon2 c.G232T p.G78C TCCTGCGGCAAGA 145 5 0.03 107 0 0 133 0 0.00 GTF2IP1 2970 hgsc.bcm.edu 37 7 72606495 72606495 + RNA SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . GGCCACCACTGTA 193 55 0.28 179 0 0 0 0 TECPR1 25851 mdanderson.org 37 7 97861128 97861128 + Missense_Mutation SNP G G T rs201920447 bycluster;by1000genomes;alternate_allele TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_015395 exon13 c.C1962A p.H654Q CTCCTCGTGGACC 26 3 0.12 41 0 0 16 0 0.00 NSMAF 8439 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 59572148 59572148 + Missense_Mutation SNP G G C rs148456704 bycluster;by1000genomes TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_003580 exon1 c.C43G p.L15V AGTAGAGCTGCAG 55 4 0.07 56 0 0 0.003 166 16 0.10 CIZ1 25792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 130941502 130941502 + Silent SNP C C T rs145714867 byfrequency TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . NM_001257975 exon8 c.G1074A p.P358P TATCCGCGGCTGA 59 7 0.12 62 0 0 0 219 76 0.35 RNR1 6052 hgsc.bcm.edu 37 MT 1068 1068 + RNA SNP A A G novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . GACCCAAACTGGG 8 4 0.50 15 0 0 0 0 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 2631 2631 + RNA SNP G G A novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . CTGTATGAATGGC 22 10 0.45 38 0 0 0 0 DOCK11 139818 broad.mit.edu 37 X 117742320 117742320 + Splice_Site SNP G G T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . DOCK11 NM_144658 exon26 c.2877+1G>T . CTAAAGGTATGAA 183 5 0.03 141 0 0 185 0 0 BAHCC1 57597 mdanderson.org 37 17 79412681 79412681 + Missense_Mutation SNP C C T novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . AGTCCACGGCCGA 51 3 0.06 65 0 0 2 0 0.00 PRKDC 5591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 48746932 48746932 + Silent SNP C C G novel TCGA-XY-A9T9-01A-11D-A435-10 TCGA-XY-A9T9-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq b7cfdf05-2b6a-4413-b224-9beb1b8c1eee 918d43a9-d4cc-4c7e-b938-334abf37a910 . . . . . . CCCGGTCAGCCAA 121 10 0.08 88 0 0 288 41 0.14