Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV TAS1R3 83756 hgsc.bcm.edu 37 1 1269674 1269674 + Missense_Mutation SNP G G T rs147583678 TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_152228 exon6 c.G2389T p.A797S ATGGGCGCCCTCC 69 4 0.06 91 0 0 0 0 PLCH2 9651 mdanderson.org 37 1 2418772 2418772 + Silent SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_014638 exon7 c.C1071T p.D357D GGTGGACATGTAT 39 3 0.08 62 0 0 0 0 TMEM51-AS1 200197 hgsc.bcm.edu 37 1 15439098 15439098 + RNA SNP C C T rs114844404 bycluster TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . TTTTCTCCTCCCG 60 18 0.30 57 0 0 0 0 BSND 7809 mdanderson.org 37 1 55470729 55470729 + Missense_Mutation SNP G G A novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_057176 exon2 c.G212A p.G71D TTCAAGGCATCCT 42 3 0.07 44 0 0 0 0 GBP3 2635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 89477486 89477486 + Missense_Mutation SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_018284 exon7 c.G1093A p.V365I TATAGACTTCAGT 280 79 0.28 218 0 0 2 0 0.00 DBT 1629 mdanderson.org 37 1 100680387 100680387 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001918 exon7 c.C925A p.P309T AGAAAGGCATAAA 43 3 0.07 32 0 0 10 0 0.00 FLG 2312 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 152283719 152283719 + Missense_Mutation SNP T T G novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a FLG,NS,carcinoma,0,2 FLG NM_002016 exon3 c.A3643C p.S1215R TTGCACTTCTGGA 94 7 0.07 83 0 0 0 2 2 0 0.00 ZC3H11A 9877 broad.mit.edu 37 1 203821424 203821424 + Missense_Mutation SNP T T C novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . ZC3H11A NM_014827 exon20 c.T2330C p.I777T AACTAATATGGGA 265 4 0.02 176 1 0.0056818182 71 106 0 0.00 RASSF4 83937 hgsc.bcm.edu 37 10 45486407 45486407 + Silent SNP T T C rs142266476 TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a RASSF4,NS,carcinoma,-2,1 RASSF4 NM_032023 exon9 c.T697C p.L233L ACAAAATTAAAAG 34 2 0.06 50 0 0 0 -2 1 36 0 0.00 ZSWIM8 23053 mdanderson.org 37 10 75550887 75550887 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_015037 exon8 c.G1096T p.A366S AATGCTGCCCCCT 56 3 0.05 72 0 0 27 0 0.00 PI4K2A 55361 mdanderson.org 37 10 99400832 99400832 + Missense_Mutation SNP G G C novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_018425 exon1 c.G333C p.E111D GTTCGAGGCGGTG 14 2 0.14 11 0 0 4 0 0.00 ANO5 203859 mdanderson.org 37 11 22272376 22272376 + Missense_Mutation SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_213599 exon11 c.C1103T p.T368M ATAGTACGTGTTT 52 3 0.06 44 0 0 1 0 0.00 TMEM109 79073 mdanderson.org 37 11 60689301 60689301 + Silent SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_024092 exon4 c.G396T p.L132L CTTCCTGCTGTGG 51 3 0.06 48 0 0 45 0 0.00 SART1 9092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 65744158 65744158 + Missense_Mutation SNP A A C novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_005146 exon14 c.A1778C p.N593T CAGCCAACGGTGG 82 51 0.62 48 0 0 387 257 0.66 GPC5 2262 mdanderson.org 37 13 92101090 92101090 + Missense_Mutation SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_004466 exon2 c.C239T p.A80V AGATTGCGGCTCG 51 3 0.06 49 0 0 0 0 F7 2155 mdanderson.org 37 13 113772845 113772845 + Silent SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_000131 exon9 c.G924T p.L308L CCGCCTGCACCAG 22 2 0.09 30 0 0 28 0 0.00 PSMB5 5693 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 23504076 23504076 + Silent SNP G G A novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a PSMB5_ENST00000493471,NS,carcinoma,0,2 PSMB5_ENST00000493471 NM_001144932 exon1 c.C15T p.S5S CAACACGCTGGCA 67 6 0.09 70 0 0 0 2 222 13 0.06 NFATC4 4776 mdanderson.org 37 14 24841809 24841809 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001198967 exon4 c.G1548T p.K516N AGTCAAGGTAAAG 18 2 0.11 36 0 0 11 0 0.00 SYNE2 23224 mdanderson.org 37 14 64421577 64421577 + Missense_Mutation SNP A A G novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_182914 exon8 c.A731G p.E244G TGAGAGAGGCCTT 23 3 0.13 20 0 0 0 0 TJP1 7082 mdanderson.org 37 15 29997939 29997939 + Missense_Mutation SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_003257 exon26 c.G4861A p.V1621M CTTCCACAGCTGA 70 4 0.06 67 0 0 106 0 0.00 UACA 55075 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 70960705 70960706 + Frame_Shift_Del DEL TG TG - novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 TG TG Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . UACA NM_018003 exon16 c.2318_2319del p.773_773del TATTTTTGTGTTA 66 35 0.53 46 0 0 235 13 0 0.00 E4F1 1877 mdanderson.org 37 16 2279574 2279574 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_004424 exon3 c.G313T p.V105L CAGGTGGTGCCGG 23 3 0.13 14 0 0 11 0 0.00 TNRC6A 27327 mdanderson.org 37 16 24788654 24788654 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_014494 exon5 c.G564T p.E188D CGGAGAGGTGCAG 18 2 0.11 13 0 0 9 0 0.00 GFOD2 81577 mdanderson.org 37 16 67709829 67709829 + Silent SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_030819 exon3 c.C387A p.A129A CACGAAGGCAGGC 46 3 0.07 70 0 0 21 0 0.00 ZCCHC14 23174 mdanderson.org 37 16 87451220 87451220 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_015144 exon8 c.C818A p.A273D CGGTAGGCCAGGG 43 3 0.07 54 0 0 4 0 0.00 . 0 broad.mit.edu 37 16 90161723 90161723 + RNA SNP T T C rs71485063 TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . CATTAGTAAGATC 167 9 0.05 176 1 0.0056818182 6 0 0.00 BCAS3 54828 broad.mit.edu;mdanderson.org 37 17 59001819 59001819 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . BCAS3 NM_001099432 exon13 c.G1045T p.A349S TTCCCTGCCCATG 74 4 0.05 45 0 0 90 8 0 0.00 HMG20B 10362 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 3575627 3575638 + In_Frame_Del DEL GGAGAAGATCCA GGAGAAGATCCA - novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 GGAGAAGATCCA GGAGAAGATCCA Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . HMG20B NM_006339 exon5 c.440_451del p.147_151del GTGCACGGAGAAG 32 11 0.34 26 0 0 12 107 0 0.00 SPC24 147841 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 11259855 11259855 + Missense_Mutation SNP G G A novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . SPC24 NM_182513 exon2 c.C220T p.H74Y CCTGGTGCACCTG 64 5 0.08 59 0 0 8 27 1 0.04 CPAMD8 27151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17039937 17039937 + Silent SNP A A G novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_015692 exon24 c.T3100C p.L1034L AAGACAAGGCCAC 23 10 0.43 30 0 0 3 1 0.33 ZNF675 171392 broad.mit.edu 37 19 23836584 23836584 + Missense_Mutation SNP G G T rs200866824 by1000genomes;alternate_allele TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . ZNF675 NM_138330 exon4 c.C1151A p.T384K TGTTCCGTAAGAT 64 3 0.05 50 0 0 88 14 0 0.00 PAPL 0 mdanderson.org 37 19 39589612 39589612 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001004318 exon4 c.G335T p.G112V GCTGTGGCAGTGC 19 2 0.11 13 0 0 0 0 PPM1N 147699 mdanderson.org 37 19 46003744 46003744 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001080401 exon3 c.G1088T p.S363I CCCCCAGCCTGAA 51 3 0.06 38 0 0 58 0 0.00 GLTSCR1 29998 mdanderson.org 37 19 48182836 48182836 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_015711 exon6 c.G409T p.A137S CAGCCTGCGGATG 29 3 0.10 25 0 0 1 0 0.00 ELSPBP1 64100 mdanderson.org 37 19 48522982 48522982 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_022142 exon5 c.G362T p.G121V AGTATGGGGGAAA 52 3 0.06 69 0 0 0 0 GRIN2D 2906 mdanderson.org 37 19 48945427 48945427 + Missense_Mutation SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_000836 exon12 c.C2461T p.R821W CTGGAGCGGCTGT 23 3 0.13 36 0 0 1 0 0.00 LHCGR 3973 mdanderson.org 37 2 48982764 48982764 + Missense_Mutation SNP A A T rs4539842 bycluster TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_000233 exon1 c.T47A p.L16Q TGCAGCAGCAGCA 12 2 0.17 8 0 0 0 0 SPRED2 200734 mdanderson.org 37 2 65541091 65541091 + Silent SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_181784 exon6 c.C801A p.P267P CACGTAGGGGTAG 28 3 0.11 22 0 0 23 0 0.00 ARHGAP25 9938 mdanderson.org 37 2 69002529 69002529 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001166277 exon2 c.G238T p.D80Y TACAAGGATGAAG 46 4 0.09 44 0 0 4 0 0.00 ANKRD30BL 554226 broad.mit.edu 37 2 132919171 132919171 + Silent SNP A A G rs199695856 bycluster TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . ANKRD30BL . . . . ATCCCCATGGTGA 107 6 0.06 91 1 0.010989011 36 0 0 UBR3 130507 mdanderson.org 37 2 170734086 170734086 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_172070 exon4 c.G927T p.E309D TCCTGAGGATAAG 50 3 0.06 33 0 0 1 0 0.00 DLX2 1746 broad.mit.edu 37 2 172967030 172967030 + Silent SNP G G C novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . DLX2 NM_004405 exon1 c.C237G p.G79G GCCCCCGCCGCCG 80 4 0.05 68 5 0.0735294118 29 0 0 . 0 broad.mit.edu 37 2 178042377 178042378 + RNA INS - - TA rs138520040 bycluster;by1000genomes TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . ATATATGTATATA 11 6 0.55 4 0 0 0 0 SCRT2 85508 mdanderson.org 37 20 644429 644429 + Nonsense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_033129 exon2 c.C810A p.C270X CTGGCGGCAGCGG 19 2 0.11 20 0 0 0 0 GPCPD1 56261 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 5528338 5528338 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_019593 exon20 c.C1988A p.A663D CCGTTGGCATCCA 110 5 0.05 61 0 0 22 0 0.00 ARHGAP40 343578 mdanderson.org 37 20 37258290 37258290 + Silent SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001164431 exon5 c.G777T p.L259L TTCCCTGCCGGTG 50 3 0.06 48 0 0 19 0 0.00 ZNF217 7764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 52198198 52198198 + Silent SNP G G A novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_006526 exon1 c.C1168T p.L390L AGACCAGCTGGTG 89 25 0.28 76 0 0 10 1 0.10 HRH3 11255 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 60791521 60791522 + Frame_Shift_Ins INS - - C novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 - - Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . HRH3 NM_007232 exon3 c.879_880insG p.G293fs ACCGCCACCCCCG 40 17 0.43 26 0 0 25 0 0 ZNF70 7621 broad.mit.edu 37 22 24087226 24087226 + Silent SNP A A G novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . ZNF70 NM_021916 exon2 c.T102C p.P34P AAGAAAAGGGTCC 230 5 0.02 87 0 0 49 2 0 0.00 . 129099 bcgsc.ca 37 22 32668450 32668450 + RNA SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . GAACTTCATCCTG 19 9 0.47 18 0 0 4 1 0.25 SLC6A20 54716 mdanderson.org 37 3 45814060 45814060 + Nonsense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_020208 exon5 c.C630A p.Y210X GATGAGGTAGATG 45 3 0.07 32 0 0 0 0 RYK 6259 broad.mit.edu 37 3 133896871 133896871 + Missense_Mutation SNP G G A novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . RYK . . . . CCATGGGCTTTTC 189 6 0.03 154 0 0 37 193 13 0.07 rescued with RNA-seq GFM1 85476 mdanderson.org 37 3 158363548 158363548 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_024996 exon2 c.G212T p.G71V ACACTGGCAGAAT 55 3 0.05 32 0 0 12 0 0.00 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 126372841 126372841 + Missense_Mutation SNP A A G novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_024582 exon9 c.A10670G p.Y3557C CCAGTTATTTCAG 95 31 0.33 102 0 0 0 0 LOC728613 0 broad.mit.edu 37 5 1633228 1633229 + RNA INS - - TCTCTCTCTTTTCC rs113894061 TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . TCATCTTCACCTC 26 6 0.23 20 0 0 0 0 . 0 bcgsc.ca 37 5 34191582 34191582 + RNA SNP G G A rs66520650 bycluster;byfrequency TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . ACACCCGCTGTGA 34 6 0.18 31 0 0 0 0 MCC 4163 broad.mit.edu;mdanderson.org 37 5 112418571 112418571 + Silent SNP T T G novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . MCC NM_001085377 exon11 c.A1770C p.T590T CCGTTCTGTTTCC 30 5 0.17 38 0 0 234 13 1 0.08 PRR16 51334 mdanderson.org 37 5 120021895 120021895 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_016644 exon3 c.G337T p.D113Y TGTGAAGACCCCA 35 3 0.09 34 0 0 4 0 0.00 SIL1 64374 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 5 138283066 138283066 + Nonsense_Mutation SNP G G A novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001037633 exon11 c.C1126T p.Q376X AGCCCTGTTCCCA 91 9 0.10 149 0 0 71 4 0.06 FTSJD2 23070 mdanderson.org 37 6 37442325 37442325 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_015050 exon18 c.G1847T p.G616V GGGATGGCCGCCA 52 3 0.06 54 0 0 49 0 0.00 RASA4CP 401331 hgsc.bcm.edu 37 7 44069004 44069004 + RNA SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . GGGCCTCGCGGAG 17 9 0.53 8 0 0 16 2 0.13 INTS4L2 0 broad.mit.edu 37 7 65150816 65150817 + RNA INS - - C novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . TCCCTCACCCCCC 35 6 0.17 27 0 0 0 0 NCAPG2 54892 broad.mit.edu 37 7 158478886 158478886 + Missense_Mutation SNP T T C novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . NCAPG2 NM_017760 exon8 c.A815G p.K272R GAAGCCTTTTTCC 317 4 0.01 221 1 0.0045248869 80 37 1 0.03 TGS1 96764 mdanderson.org 37 8 56723593 56723593 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_024831 exon11 c.G2297T p.W766L CACCTTGGGGAGG 42 3 0.07 31 0 0 48 0 0.00 PLEC 5339 mdanderson.org 37 8 144996006 144996006 + Silent SNP G G T rs376058402 alternate_allele TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_201380 exon32 c.C8394A p.A2798A GATGCCGGCCTCC 18 2 0.11 26 0 0 30 0 0.00 AQP7 364 mdanderson.org 37 9 33385047 33385047 + Missense_Mutation SNP G G A rs78431873 bycluster TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_001170 exon8 c.C985T p.P329S GGGCAGGGTGGAC 22 2 0.09 16 0 0 16 0 0.00 FOXE1 2304 bcgsc.ca 37 9 100616400 100616400 + Missense_Mutation SNP C C G novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . FOXE1 NM_004473 exon1 c.C204G p.H68Q CGCGCACGCGCCC 67 28 0.42 34 1 0.0294117647 19 0 0 C9orf43 257169 mdanderson.org 37 9 116187328 116187328 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_152786 exon9 c.G837T p.L279F ACGTTTGAAGAAA 35 3 0.09 16 0 0 0 0 RNR1 6052 hgsc.bcm.edu 37 MT 1586 1586 + RNA SNP G G A novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . TGGAAAGTGCACT 15 13 0.87 26 0 0 0 0 MAOA 4128 mdanderson.org 37 X 43590942 43590942 + Missense_Mutation SNP G G T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . NM_000240 exon8 c.G797T p.C266F TTTAGTGCAAATA 61 4 0.07 47 0 0 6 0 0.00 MAGEA12 4111 hgsc.bcm.edu;ucsc.edu 37 X 151899528 151899528 + RNA SNP C C T novel TCGA-YU-AA4L-01A-11D-A435-10 TCGA-YU-AA4L-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 5c166720-7105-4052-bcbd-b3f546b1043b ef89d76a-cb3c-4473-888b-99ccd7d3dd3a . . . . . . GATTTCCCAATCT 77 33 0.43 61 0 0 383 162 0.42