Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV MST1L 0 broad.mit.edu 37 1 17083496 17083496 + RNA SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . . . . . GCAAAAACAGTGG 12 4 0.33 21 0 0 3 0 0.00 KIF17 57576 broad.mit.edu 37 1 21016763 21016763 + Missense_Mutation SNP C C A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . KIF17 NM_020816 exon7 c.G1299T p.R433S CTCCAGCCTGGCC 133 6 0.05 121 1 0.0082644628 130 4 0 0.00 SPOCD1 90853 broad.mit.edu 37 1 32259795 32259795 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d SPOCD1,NS,carcinoma,-1,1 SPOCD1 NM_144569 exon11 c.C2313A p.P771P TGCGATGGGCAGG 251 5 0.02 166 0 0 109 1 4 0 0.00 SERBP1 26135 broad.mit.edu 37 1 67895862 67895862 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . SERBP1 NM_015640 exon1 c.C122A p.A41D CCGCCGGCTTCTT 139 6 0.04 119 3 0.025210084 31 57 0 0.00 ABCD3 5825 broad.mit.edu 37 1 94964163 94964163 + Silent SNP A A T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . ABCD3 NM_002858 exon17 c.A1392T p.R464R GGTTCGATCTGGG 174 14 0.08 140 7 0.05 62 0 0 ADAR 103 broad.mit.edu 37 1 154574388 154574388 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . ADAR NM_001111 exon2 c.C730A p.P244T TAAAAGGCTCAAG 172 6 0.03 152 0 0 113 11 0 0.00 PDDC1 347862 mdanderson.org 37 11 775093 775093 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_182612 exon2 c.C114A p.A38A GTTGAAGGCGGTG 39 3 0.08 53 1 0.0188679245 0 0 C11orf95 65998 broad.mit.edu 37 11 63533381 63533381 + RNA SNP C C A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001144936 exon2 c.G535T p.A179S CCTCGGCCTCTCC 38 8 0.21 47 2 0.0425531915 0 0 FAM76B 143684 mdanderson.org 37 11 95521721 95521721 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_144664 exon2 c.C94A p.R32R CAATCCGACATTC 40 3 0.08 30 0 0 0 0 CBL 867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 119149218 119149218 + Splice_Site SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d CBL,colon,carcinoma,0,7 CBL NM_005188 exon9 c.1228-2A>G . TTCTGCAGGAATC 88 46 0.52 159 0 0 0 7 1 1 1.00 FBXL14 144699 broad.mit.edu 37 12 1703090 1703090 + Missense_Mutation SNP A A C novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . FBXL14 NM_152441 exon1 c.T143G p.V48G GCCTCCACCCCCC 39 21 0.54 18 8 0.4444444444 19 0 0 GPR162 27239 broad.mit.edu 37 12 6933751 6933751 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d GPR162,colon,carcinoma,+1,1 GPR162 NM_019858 exon2 c.G687T p.G229G GGGTGGGCCAGGG 103 5 0.05 54 1 0.0185185185 55 1 0 0 FAM186A 121006 hgsc.bcm.edu 37 12 50746615 50746615 + Missense_Mutation SNP T T C novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001145475 exon4 c.A4000G p.T1334A CCTGAGTCTGCGC 122 5 0.04 93 0 0 0 0 BAZ2A 11176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56995804 56995804 + Silent SNP T T C novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_013449 exon20 c.A3603G p.Q1201Q CCTAGGTTGCATA 109 17 0.16 100 0 0 8 1 0.13 NACA 4666 broad.mit.edu 37 12 57111746 57111746 + Missense_Mutation SNP A A G rs2958150 TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . NACA . . . . TGGGGGATGGGGT 179 13 0.07 128 9 0.0703125 131 0 0 . 0 broad.mit.edu 37 12 127423596 127423597 + RNA DEL TG TG - novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 TG TG Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . . . . . TGTGTTTGTGTGT 6 3 0.50 7 0 0 0 0 STOML3 161003 mdanderson.org 37 13 39544325 39544325 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_145286 exon5 c.C513A p.I171I TACCTGGATGCTA 125 5 0.04 133 0 0 0 0 EDNRB 1910 mdanderson.org 37 13 78492307 78492307 + Silent SNP G G A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d EDNRB_ENST00000377211,NS,carcinoma,0,2 EDNRB_ENST00000377211 NM_001201397 exon2 c.C672T p.N224N GGGACCGTTTCGC 85 4 0.05 98 0 0 0 2 0 0 PSMC1 5700 broad.mit.edu 37 14 90735759 90735759 + Silent SNP T T G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . PSMC1 NM_002802 exon9 c.T900G p.G300G TTCTGGTGGTGAG 34 10 0.29 33 3 0.0909090909 27 60 0 0.00 BCL11B 64919 hgsc.bcm.edu 37 14 99641568 99641568 + Missense_Mutation SNP C C G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d BCL11B,colon,carcinoma,0,1 BCL11B NM_138576 exon4 c.G1605C p.E535D CTCCTCCTCGTCC 31 4 0.13 21 0 0 0 1 0 0 DYNC1H1 1778 hgsc.bcm.edu;mdanderson.org 37 14 102505463 102505463 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001376 exon60 c.G11332T p.A3778S GAGGCTGCAGAGG 86 4 0.05 63 0 0 24 0 0.00 IFT140 9742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 1634408 1634408 + Missense_Mutation SNP T T C rs369998823 TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_014714 exon11 c.A1169G p.K390R AGGTTCTTCCTGG 25 5 0.20 27 0 0 3 1 0.33 PSMB10 5699 broad.mit.edu 37 16 67969561 67969561 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . PSMB10 NM_002801 exon5 c.C423A p.G141G GTCTACGCCGCCC 136 5 0.04 65 0 0 19 274 0 0.00 SGSM2 9905 mdanderson.org 37 17 2266364 2266364 + Missense_Mutation SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001098509 exon6 c.A608G p.Q203R TGGTCCAGCGGCA 42 3 0.07 47 0 0 14 0 0.00 CAMTA2 23125 mdanderson.org 37 17 4883099 4883099 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001171167 exon9 c.C1587A p.F529L GTCTGGGAATGAT 51 3 0.06 62 0 0 16 0 0.00 BCL6B 255877 broad.mit.edu 37 17 6930932 6930932 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . BCL6B NM_181844 exon9 c.G1434T p.G478G CGGGGGGCCCTAG 51 6 0.12 51 1 0.0196078431 85 0 0 SLC35G6 643664 mdanderson.org 37 17 7385311 7385311 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001102614 exon2 c.G8T p.G3V AGGCTGGCAGTCA 41 3 0.07 88 1 0.0113636364 0 0 MYH3 4621 mdanderson.org 37 17 10533025 10533025 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d MYH3,NS,carcinoma,0,1 MYH3 NM_002470 exon40 c.C5685A p.T1895T GAATTTGGTGAGA 51 3 0.06 79 0 0 0 1 79 0 0.00 NOS2 4843 mdanderson.org 37 17 26096134 26096134 + Missense_Mutation SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_000625 exon17 c.T1903C p.C635R AGGCGCAGAACCG 35 3 0.09 39 0 0 0 0 MYO18A 399687 broad.mit.edu;mdanderson.org 37 17 27437604 27437604 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d MYO18A_ENST00000527372,NS,carcinoma,0,2 MYO18A NM_078471 exon18 c.C2937A p.G979G GGCACTGCCTGCG 31 7 0.23 32 2 0.0625 217 2 4 1 0.25 SLFN14 342618 broad.mit.edu;mdanderson.org 37 17 33875849 33875849 + Silent SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . SLFN14 NM_001129820 exon4 c.T2148C p.L716L AGGGGGAAGGCCA 148 5 0.03 80 0 0 43 0 0 SP2 6668 broad.mit.edu 37 17 45993951 45993951 + Missense_Mutation SNP T T C novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . SP2 NM_003110 exon3 c.T514C p.S172P TCACCGTCCAGTC 114 8 0.07 91 5 0.0549450549 38 5 0 0.00 MYCBPAP 84073 broad.mit.edu 37 17 48585969 48585969 + Silent SNP T T G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . MYCBPAP NM_032133 exon1 c.T63G p.G21G GGCGGGTGCGGCG 136 36 0.26 105 20 0.1904761905 135 0 0 CREB3L3 84699 ucsc.edu 37 19 4168454 4168454 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . CREB3L3 NM_032607 exon6 c.G821T p.R274L AGACTCGGTGGGT 42 4 0.10 48 0 0 53 0 0 PLIN5 440503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 4529156 4529157 + Missense_Mutation DNP GC GC AA novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 GC GC Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d PLIN5,NS,carcinoma,0,1 PLIN5 NM_001013706 exon5 c.G448T p.A150F TCCACAGCATGGC 132 39 0.30 127 0 0 0 1 2 0 0.00 PTPRS 5802 mdanderson.org 37 19 5246019 5246019 + Missense_Mutation SNP C C A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_002850 exon10 c.G756T p.M252I GTGGCTCATGGGC 34 3 0.09 31 0 0 9 0 0.00 RASAL3 64926 mdanderson.org 37 19 15564108 15564108 + Missense_Mutation SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_022904 exon15 c.G2480A p.R827H CGGCGGCGGGCAG 10 2 0.20 16 0 0 1 0 0.00 ANKLE1 126549 broad.mit.edu 37 19 17397488 17397501 + Frame_Shift_Del DEL TGTGTGTGTGTGTT TGTGTGTGTGTGTT - rs35771129 alternate_allele TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 TGTGTGTGTGTGTT TGTGTGTGTGTGTT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . ANKLE1 . . . . TGTGTGTGTGTGT 14 7 0.50 12 0 0 27 9 0 0.00 ZNF90 7643 mdanderson.org 37 19 20216113 20216113 + Missense_Mutation SNP G G A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_007138 exon3 c.G214A p.A72T ATGATTGCCAAAT 42 3 0.07 36 1 0.0277777778 2 0 0.00 ZNF43 7594 mdanderson.org 37 19 21991246 21991246 + Silent SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001256653 exon4 c.T1620C p.T540T AGTATGAGTTATC 27 3 0.11 26 0 0 16 0 0.00 . 0 broad.mit.edu 37 19 22788909 22788910 + RNA INS - - T rs3830337 bycluster;by1000genomes TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . . . . . GCCGAGGTGTTGG 6 2 0.33 4 0 0 0 0 ETV2 2116 broad.mit.edu 37 19 36135558 36135558 + Missense_Mutation SNP C C A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . ETV2 NM_014209 exon7 c.C833A p.A278D AGGTGGCTCGGCT 73 10 0.14 57 2 0.0350877193 11 10 0 0.00 ZNF146 7705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36727687 36727687 + Silent SNP C C T rs369142601 TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001099638 exon3 c.C345T p.L115L AAACCTCATCAGA 98 15 0.15 115 0 0 106 27 0.25 FAM98C 147965 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 19 38899499 38899499 + Missense_Mutation SNP C C T rs200637370 TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d FAM98C,NS,carcinoma,0,1 FAM98C NM_174905 exon8 c.C1027T p.R343C TGGGGTCGCAAGA 139 29 0.21 127 0 0 0 1 51 12 0.24 DYRK1B 9149 broad.mit.edu 37 19 40316422 40316422 + Missense_Mutation SNP T T G rs200959786 TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . DYRK1B NM_004714 exon11 c.A1823C p.D608A GCAGGGTCATCAG 50 14 0.28 33 5 0.1515151515 114 93 6 0.06 LRRC4B 94030 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 51020870 51020870 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . LRRC4B NM_001080457 exon3 c.C2100A p.F700L GCTCTTGAAGAGC 49 5 0.10 47 0 0 89 40 0 0.00 . 0 broad.mit.edu 37 19 52646133 52646133 + RNA DEL T T - novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . . . . . GGAGAATTTTTTT 9 3 0.33 5 0 0 1 0 0.00 CAPN14 440854 broad.mit.edu 37 2 31428301 31428301 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d CAPN14,colon,carcinoma,0,1 CAPN14 NM_001145122 exon2 c.C13A p.P5T AAGGTGGCCACAG 263 6 0.02 185 1 0.0054054054 36 1 0 0 RGPD2 729857 broad.mit.edu 37 2 88125234 88125234 + Silent SNP T T C novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . RGPD2 NM_001078170 exon1 c.A15G p.K5K GTAGGCTTTGCTG 79 10 0.13 56 1 0.0178571429 14 0 0 RBMS1 5937 hgsc.bcm.edu;mdanderson.org 37 2 161223862 161223862 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_016836 exon2 c.C116A p.P39H GTGCTGGGACTGG 64 4 0.06 63 0 0 1 0 0.00 RAPH1 65059 broad.mit.edu 37 2 204322299 204322299 + Missense_Mutation SNP T T C novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . RAPH1 NM_203365 exon10 c.A1268G p.K423R GTTTCTTTTTTCC 87 3 0.03 61 2 0.0327868852 118 0 0 NSFL1C 55968 mdanderson.org 37 20 1424505 1424505 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_016143 exon9 c.C1002A p.A334A GCTGGTGGCAGCC 46 3 0.07 42 0 0 215 0 0.00 SOGA1 140710 broad.mit.edu;mdanderson.org 37 20 35438485 35438485 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . SOGA1 NM_080627 exon7 c.C2483A p.A828D GCCTCAGCCAGCA 28 6 0.21 27 0 0 136 0 0 NFATC2 4773 mdanderson.org 37 20 50049146 50049146 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_012340 exon9 c.C2180A p.P727H TGGCAGGGAGCCA 33 3 0.09 21 0 0 0 0 DSCAM 1826 broad.mit.edu 37 21 41719815 41719815 + Missense_Mutation SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . DSCAM NM_001271534 exon6 c.T992C p.V331A AAGGAAACTTGGC 128 4 0.03 93 0 0 347 0 0 PI4KAP2 0 broad.mit.edu 37 22 21829278 21829279 + RNA DEL AT AT - rs67076732 alternate_allele TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 AT AT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . PI4KAP2 . . . . ACATAAATAGAGG 22 7 0.32 22 3 0.1363636364 11 3 0 0.00 ZNF280B 140883 bcgsc.ca 37 22 22842518 22842518 + Silent SNP G G A rs73156173 bycluster;byfrequency TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . ZNF280B NM_080764 exon4 c.C1206T p.P402P CACATAGGGCATT 163 15 0.09 138 2 0.0144927536 67 3 2 0.67 ZNF280B 140883 mdanderson.org 37 22 22843071 22843071 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d ZNF280B,NS,carcinoma,0,1 ZNF280B NM_080764 exon4 c.C653A p.P218H TTTGAGGGTGTAC 140 5 0.04 117 0 0 0 1 0 0 MMP11 4320 broad.mit.edu 37 22 24121476 24121476 + Missense_Mutation SNP C C A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . MMP11 NM_005940 exon2 c.C211A p.P71T CCCCGGCCTGCCA 72 9 0.13 37 1 0.027027027 53 0 0 MN1 4330 mdanderson.org 37 22 28195192 28195192 + Missense_Mutation SNP G G T rs375740551 TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_002430 exon1 c.C1340A p.A447E GGGGGCGCGTCGA 42 3 0.07 41 0 0 0 0 SYN3 8224 broad.mit.edu 37 22 32923915 32923915 + Silent SNP T T G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . SYN3 NM_133633 exon11 c.A1308C p.P436P CGGAGGTGGGCGT 144 23 0.16 120 19 0.1583333333 77 0 0 CELSR1 9620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 46763694 46763694 + Missense_Mutation SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_014246 exon28 c.G8011A p.G2671R GCAGCCCCAGCAG 107 26 0.24 75 0 0 4 2 0.50 . 0 broad.mit.edu 37 3 10035779 10035783 + RNA DEL AGTCT AGTCT - novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 AGTCT AGTCT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . . . . . AAGAGAAGTCTGA 14 5 0.36 11 0 0 0 0 MAP4 4134 broad.mit.edu;mdanderson.org 37 3 47963340 47963340 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . MAP4 NM_001134364 exon5 c.C444A p.D148E TGCCAGGTCATCA 63 4 0.06 99 0 0 176 9 0 0.00 NT5DC2 64943 mdanderson.org 37 3 52558632 52558632 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001134231 exon14 c.C1528A p.L510I AGCTGAGGGAGGC 51 3 0.06 45 0 0 829 1 0.00 CHCHD6 84303 broad.mit.edu;bcgsc.ca 37 3 126571534 126571534 + Silent SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . CHCHD6 NM_032343 exon5 c.C456T p.D152D CCGTGACACCTTC 92 28 0.30 94 2 0.0212765957 18 14 10 0.71 ATR 545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 142186852 142186852 + Missense_Mutation SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001184 exon39 c.T6611C p.M2204T TTTTTCATATGAA 48 21 0.44 45 0 0 2 2 1.00 TP63 8626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 189597936 189597936 + Missense_Mutation SNP C C G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001114979 exon11 c.C1433G p.S478C GACATTCCAAGCC 129 33 0.26 129 0 0 0 0 SDHAP2 0 broad.mit.edu;ucsc.edu 37 3 195400728 195400728 + RNA SNP A A G rs77981248 TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . . . . . GTGCCCAGCCTGT 68 9 0.13 61 1 0.0163934426 6 0 0.00 ZDHHC11 79844 mdanderson.org 37 5 840644 840644 + Missense_Mutation SNP G G C rs200038670 bycluster TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_024786 exon5 c.C750G p.H250Q GCCCAGGTGCACC 26 2 0.08 28 1 0.0357142857 0.001 15 3 0.20 IRX2 153572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 2749803 2749803 + Silent SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d IRX2,NS,carcinoma,0,1 IRX2 NM_001134222 exon2 c.G348A p.A116A GCGGTACGCGGGG 52 16 0.31 57 0 0 0 1 1 0 0.00 DMGDH 29958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 78347182 78347182 + Silent SNP T T G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_013391 exon5 c.A673C p.R225R CTGACCTGGCTTT 112 36 0.32 105 0 0 0 0 NDST1 3340 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 149915275 149915277 + In_Frame_Del DEL CCA CCA - novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 CCA CCA Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . NDST1 NM_001543 exon6 c.1264_1266del p.422_422del GCATTCCCACAGA 97 28 0.29 106 0 0 79 3 0 0.00 F13A1 2162 mdanderson.org 37 6 6248642 6248642 + Missense_Mutation SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_000129 exon6 c.G701A p.G234D AGGATGCCATCTT 36 3 0.08 32 0 0 0 0 BTN2A3P 0 broad.mit.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d BTN2A3,NS,carcinoma,0,9 . . . . . ATGGAACCAGCTG 69 6 0.09 80 2 0.025 9 1 0 0.00 DPCR1 135656 mdanderson.org 37 6 30920763 30920763 + Missense_Mutation SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_080870 exon3 c.C4051T p.R1351W ATGATGCGGACAC 81 4 0.05 80 1 0.0125 0 0 GPR6 0 broad.mit.edu 37 6 110300642 110300642 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d GPR6,caecum,carcinoma,+2,1 GPR6 NM_005284 exon1 c.G327T p.V109V GTTCGTGCTGGTA 54 6 0.11 45 0 0 46 1 0 0 MUC17 140453 hgsc.bcm.edu 37 7 100679221 100679221 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001040105 exon3 c.G4524T p.T1508T CTCAACGCCTAGT 73 6 0.08 90 0 0 0 0 MDFIC 29969 mdanderson.org 37 7 114563096 114563096 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001166346 exon2 c.G335T p.G112V TGTCCGGCGCGGG 12 2 0.17 22 0 0 0 0 EPHB6 2051 bcgsc.ca;mdanderson.org 37 7 142562074 142562074 + Silent SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . EPHB6 NM_004445 exon7 c.C516T p.S172S CTCCTCCTCTTCT 106 5 0.05 71 1 0.014084507 168 4 0 0.00 KCNH2 3757 hgsc.bcm.edu;mdanderson.org 37 7 150645544 150645544 + Missense_Mutation SNP G G T rs199473433 alternate_allele TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d KCNH2,NS,adenocarcinoma,+1,1 KCNH2 NM_000238 exon11 c.C2680A p.R894S CCGTGCGCCTGCG 30 2 0.07 23 0 0 1 1 2 0 0.00 SFRP1 6422 broad.mit.edu 37 8 41166547 41166547 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d SFRP1_ENST00000220772,NS,carcinoma,0,3 SFRP1 NM_003012 exon1 c.C132A p.G44G GTACGGGCCGATG 32 7 0.22 19 0 0 60 3 0 0 AGO2 27161 broad.mit.edu 37 8 141551316 141551316 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_012154 exon15 c.C1981A p.P661T GGGTGGGCTTGAA 83 7 0.08 54 1 0.0185185185 6 0 0.00 UBQLN1 29979 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 86294939 86294939 + Frame_Shift_Del DEL T T - novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . UBQLN1 NM_053067 exon4 c.463delC p.L155fs TGCAAGTCCCCCA 83 19 0.23 87 0 0 49 3 0 0.00 UBQLN1 29979 bcgsc.ca 37 9 86294940 86294940 + Missense_Mutation SNP C C A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . UBQLN1 NM_053067 exon4 c.G461T p.G154V GCAAGTCCCCCAA 82 19 0.23 86 0 0 49 3 0 0.00 UBQLN1 29979 hgsc.bcm.edu 37 9 86294943 86294943 + Frame_Shift_Del DEL C C - novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . UBQLN1 NM_053067 exon4 c.459delG p.G153fs AGTCCCCCAAGGC 85 0 0.00 84 0 0 49 5 0 0.00 FBP2 8789 mdanderson.org 37 9 97325644 97325644 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_003837 exon6 c.C805A p.Q269K TCTTCTGGTTGGC 56 3 0.05 64 0 0 0 0 FIBCD1 84929 bcgsc.ca 37 9 133805022 133805022 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . FIBCD1 NM_001145106 exon3 c.C484A p.R162R CCTTCCGCAGCCC 44 4 0.09 55 0 0 34 1 0 0.00 SETX 23064 mdanderson.org 37 9 135203904 135203904 + Silent SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_015046 exon10 c.C3081A p.I1027I ACTCAGGATTCTT 43 3 0.07 48 0 0 0 0 ENTPD2 954 ucsc.edu;bcgsc.ca 37 9 139944978 139944978 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . ENTPD2 NM_203468 exon6 c.C787A p.H263N AGGGGTGGAAGCC 30 4 0.13 39 0 0 30 0 0 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 3150 3150 + RNA SNP T T C rs28656364 bycluster TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . . . . . AAGGCCTACTTCA 28 4 0.14 10 0 0 0 0 DMD 1756 broad.mit.edu 37 X 31462743 31462743 + Splice_Site SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . DMD NM_004006 exon60 c.C8939A p.A2980E CGAAGTGCCTGTG 63 7 0.11 35 2 0.0571428571 2127 4 0 0.00 DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 X 32663131 32663131 + Nonsense_Mutation SNP C C A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_004006 exon10 c.G1099T p.E367X AAATCTCTCCTTG 122 52 0.43 74 0 0 6 2 0.33 RBM3 5935 broad.mit.edu 37 X 48434994 48434994 + Splice_Site SNP T T G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . RBM3 NM_006743 exon5 c.413+2T>G . GGCAGGTGGGTAG 42 7 0.17 24 4 0.1666666667 20 0 0 HUWE1 10075 broad.mit.edu;ucsc.edu;mdanderson.org 37 X 53585984 53585984 + Nonsense_Mutation SNP C C T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . HUWE1 NM_031407 exon58 c.G7953A p.W2651X TTCTGTCCAGCGG 169 68 0.40 119 1 0.0084033613 724 3 0 0.00 FGD1 2245 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54476099 54476099 + Missense_Mutation SNP T T A novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_004463 exon14 c.A2141T p.N714I GGAGAGTTGGGTG 57 20 0.35 57 0 0 22 8 0.36 AWAT1 158833 mdanderson.org 37 X 69458085 69458085 + Missense_Mutation SNP G G T novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . . NM_001013579 exon5 c.G484T p.A162S CAGCCAGCCATCA 51 3 0.06 26 0 0 0 0 PNMA3 29944 broad.mit.edu 37 X 152226011 152226011 + Missense_Mutation SNP A A G novel TCGA-ZM-AA06-01A-12D-A435-10 TCGA-ZM-AA06-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2dc9fe22-781b-41a9-9eda-d7faaa6af579 8eeb0d34-42a4-47a8-9857-139c9c599b8d . PNMA3 NM_013364 exon2 c.A599G p.E200G AGGGGGAAAAGAG 55 17 0.31 48 13 0.2708333333 81 3 0 0.00