Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL TVaf_SOL NTotCov_SOL NVarCov_SOL NVaf_SOL dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq Ttot_rna Tvar_rna Tvaf_rna note germline-maf-frequency IGV PTPRF 5792 mdanderson.org 37 1 44064408 44064408 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_002840 exon13 c.C2137T p.R713W CCTCCGCGGAAGG 70 4 0.06 117 0 0 3 0 0.00 FPGT-TNNI3K 100144878 bcgsc.ca;mdanderson.org 37 1 74946064 74946064 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . AACCGAGCAAGGG 63 5 0.08 51 0 0 0 0 BCL9 607 hgsc.bcm.edu;broad.mit.edu 37 1 147084715 147084715 + Silent SNP T T C novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e BCL9_ENST00000234739,right_upper_lobe,carcinoma,0,1 BCL9_ENST00000234739 NM_004326 exon5 c.T87C p.R29R GGTCCGTCCCCCT 61 3 0.05 74 0 0 0 1 1 0 0.00 DHX9 1660 mdanderson.org 37 1 182852411 182852411 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001357 exon25 c.C3052T p.R1018C GAAGGGCGTAATG 119 5 0.04 123 0 0 48 0 0.00 TRIM67 440730 mdanderson.org 37 1 231299690 231299690 + Silent SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001004342 exon1 c.G975T p.L325L TTATCTGTGCCTG 48 3 0.06 79 0 0 0 0 CAMK2G 818 mdanderson.org 37 10 75585052 75585052 + Silent SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001204492 exon15 c.C1107A p.P369P CTGCAAGGGCGCG 42 3 0.07 83 0 0 1 0 0.00 HPS1 3257 bcgsc.ca 37 10 100184075 100184075 + Silent SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e HPS1,colon,carcinoma,-1,1 HPS1 NM_000195 exon14 c.C1392A p.S464S CTCCCAGGAGGAT 49 4 0.08 70 0 0 65 1 28 0 0.00 FGFR2 2263 mdanderson.org 37 10 123256223 123256223 + Silent SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_022970 exon13 c.C1689A p.V563V AACTATGACATAG 75 4 0.05 84 0 0 1 0 0.00 CDKN1C 1028 mdanderson.org 37 11 2905277 2905277 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e CDKN1C,NS,carcinoma,0,1 CDKN1C NM_000076 exon2 c.G908T p.G303V CCCACGCCAGGGG 30 3 0.10 71 0 0 0 1 1 0 0.00 FOLH1 2346 mdanderson.org 37 11 49204790 49204790 + Silent SNP A A G rs76509850 bycluster;byfrequency TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_004476 exon7 c.T831C p.Y277Y ATAAGCATATTCT 153 7 0.05 159 0 0 0.006 0 0 TMX2 51075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57505458 57505458 + Silent SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_015959 exon3 c.G324A p.L108L CCGCTTGGATATT 121 18 0.15 209 0 0 1 0 0.00 C11orf30 56946 broad.mit.edu 37 11 76257194 76257194 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . C11orf30 NM_020193 exon20 c.G3627T p.E1209D TAGAGAGTCCTGT 122 4 0.03 151 0 0 123 0 0 TENM4 26011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 78780952 78780952 + Missense_Mutation SNP G G C novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001098816 exon5 c.C38G p.T13S CGCCGGGTCAGCG 34 7 0.21 63 0 0 0 0 PRDM10 56980 mdanderson.org 37 11 129788444 129788444 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_020228 exon15 c.G2216A p.R739H ATGCCGCGCCGCC 43 3 0.07 66 0 0 0 0 TRAFD1 10906 mdanderson.org 37 12 112589913 112589913 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001143906 exon10 c.T1588C p.S530P TCTTTCTCCCCTG 38 3 0.08 71 0 0 13 0 0.00 NOC4L 79050 mdanderson.org 37 12 132632486 132632486 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_024078 exon6 c.G665T p.R222L CCCGCCGGGAGCC 41 3 0.07 62 0 0 22 0 0.00 . 0 broad.mit.edu 37 14 19857036 19857036 + RNA SNP A A G rs374719458 TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . ATAATAAAGTTCA 56 7 0.13 50 1 0.02 2 0 0.00 RPS6KL1 83694 mdanderson.org 37 14 75378050 75378050 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_031464 exon6 c.C565T p.R189W TCAGCCGCTCCCT 40 3 0.08 79 0 0 0 0 DIO2 1734 broad.mit.edu 37 14 80669620 80669620 + Silent SNP A A C novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . DIO2 . . . . ATCCTCACCCAAT 204 38 0.19 162 31 0.1913580247 73 0 0 CHGA 1113 broad.mit.edu;mdanderson.org 37 14 93399135 93399135 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . CHGA NM_001275 exon7 c.A1229G p.Q410R CCCTCCAGGTCCG 77 5 0.06 85 0 0 32 2 0 0.00 AHNAK2 113146 broad.mit.edu 37 14 105406606 105406606 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . AHNAK2 NM_138420 exon7 c.C15182A p.T5061K TTTTCTGTGTCTT 212 6 0.03 230 0 0 719 1 0 0.00 . 646507 bcgsc.ca 37 15 23469716 23469716 + RNA SNP G G A rs62001522 TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . GAGGAGGCCACGG 38 10 0.26 35 1 0.0285714286 0 0 DISP2 85455 mdanderson.org 37 15 40661845 40661845 + Missense_Mutation SNP A A T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_033510 exon8 c.A3532T p.T1178S TTTGACACCAGCA 30 3 0.10 40 0 0 0 0 PLEKHO2 80301 mdanderson.org 37 15 65157774 65157774 + Missense_Mutation SNP G G A rs151003394 bycluster;byfrequency;by1000genomes TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_025201 exon6 c.G1160A p.R387H ATCCCCGCTGCTC 40 3 0.08 66 0 0 0.002 29 0 0.00 LMAN1L 79748 mdanderson.org 37 15 75108636 75108636 + Missense_Mutation SNP G G T rs3803568 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_021819 exon2 c.G314T p.R105L GGCGCCGGGGAGC 34 3 0.09 43 0 0 0 0 IQGAP1 8826 hgsc.bcm.edu;broad.mit.edu 37 15 91037943 91037944 + Splice_Site DEL AG AG - novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 AG AG Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . IQGAP1 . . . . TTTTACAGAGTCT 162 12 0.07 189 0 0 140 0 0 ZNF646 9726 mdanderson.org 37 16 31087875 31087875 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_014699 exon2 c.G230T p.C77F TCCCCTGTACCAC 50 3 0.06 82 0 0 2 0 0.00 TNFSF12 8742 mdanderson.org 37 17 7460571 7460571 + Silent SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_003809 exon7 c.G654T p.L218L GGCCCTGCGGCCA 45 3 0.07 65 0 0 56 0 0.00 TEKT3 64518 broad.mit.edu 37 17 15217536 15217536 + Missense_Mutation SNP G G T rs143711449 alternate_allele TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e TEKT3,NS,adenocarcinoma,+1,1 TEKT3 NM_031898 exon6 c.C746A p.A249E TGGGACGCTCTGT 98 5 0.05 115 0 0 64 1 0 0 FMNL1 752 mdanderson.org 37 17 43321261 43321261 + Missense_Mutation SNP C C T rs371426654 TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_005892 exon18 c.C2317T p.R773W GAGCAGCGGCCAA 46 3 0.07 56 0 0 42 0 0.00 UBE2Z 65264 mdanderson.org 37 17 46985927 46985927 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_023079 exon1 c.C62T p.A21V CCGGGGCGAGCAG 16 2 0.13 16 0 0 2 0 0.00 SMCHD1 23347 mdanderson.org 37 18 2705754 2705754 + Silent SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e SMCHD1,NS,carcinoma,0,3 SMCHD1 NM_015295 exon14 c.C1905T p.G635G TTATGGCGATCAT 49 3 0.06 49 1 0.0204081633 0 3 2 0 0.00 INO80C 125476 broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 33060445 33060445 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . INO80C NM_001098817 exon4 c.C347A p.P116H GGCAAAGGTTTGG 107 6 0.06 126 0 0 18 23 0 0.00 DNMT1 1786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10291231 10291231 + Silent SNP A A G novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001130823 exon4 c.T240C p.A80A GACTTTAGCCAGG 61 8 0.13 90 0 0 0 0 SMARCA4 6597 mdanderson.org 37 19 11097625 11097625 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_003072 exon5 c.C805T p.P269S GGCGTGCCCCCCG 15 2 0.13 20 0 0 0 0 INSL3 3640 mdanderson.org 37 19 17927833 17927833 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001265587 exon3 c.C321A p.C107X CATGGAGCAGATG 34 3 0.09 48 0 0 8 0 0.00 CPT1C 126129 mdanderson.org 37 19 50215119 50215119 + Silent SNP G G A rs375017702 alternate_allele TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001199752 exon17 c.G1920A p.L640L GGCTCTGCTGAAG 31 3 0.10 69 0 0 4 0 0.00 CLEC11A 6320 broad.mit.edu;mdanderson.org 37 19 51227265 51227265 + Missense_Mutation SNP A A G novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . CLEC11A NM_002975 exon2 c.A251G p.E84G AGGGGGAGGAAGA 89 5 0.06 119 0 0 23 2 0 0.00 . 0 broad.mit.edu 37 19 52646132 52646133 + RNA INS - - T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . GGGAGAATTTTTT 9 3 0.33 7 0 0 3 0 0.00 ZNF525 170958 broad.mit.edu 37 19 53879109 53879109 + Silent SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . ZNF525 . . . . ATACAGGGACGTG 50 5 0.10 50 1 0.02 35 8 0 0.00 IL11 3589 mdanderson.org 37 19 55879667 55879667 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_000641 exon4 c.G340T p.A114S CACCTGCCCGGCG 36 3 0.08 68 0 0 0 0 RPS5 6193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58904766 58904766 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001009 exon4 c.G359T p.G120V ACAGTGGTCCCCG 33 8 0.24 51 0 0 1930 568 0.29 CEP68 23177 mdanderson.org 37 2 65299480 65299480 + Missense_Mutation SNP C C A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_015147 exon3 c.C1250A p.A417D AGCCAGCCCTGAG 43 3 0.07 74 0 0 5 0 0.00 . 0 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 90212209 90212209 + RNA SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . GAGCCTGAAGATT 225 25 0.11 227 1 0.0044052863 29 0 0.00 NCKAP5 344148 mdanderson.org 37 2 133543187 133543187 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e NCKAP5,caecum,carcinoma,0,1 NCKAP5 NM_207363 exon14 c.C1197A p.S399R AATGTGGCTTTCC 85 4 0.05 124 1 0.0080645161 0 1 0 0 CCDC173 129881 broad.mit.edu 37 2 170518895 170518895 + Silent SNP T T C novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001085447 exon5 c.A714G p.K238K AGCATCTTTTTCT 143 4 0.03 148 0 0 0 0 AOX1 316 broad.mit.edu;mdanderson.org 37 2 201467017 201467017 + Silent SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . AOX1 NM_001159 exon6 c.C447T p.C149C CCTGTGCCGTTGC 109 5 0.05 138 0 0 152 0 0 VSTM2L 128434 mdanderson.org 37 20 36560151 36560151 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e VSTM2L,NS,carcinoma,0,1 VSTM2L NM_080607 exon2 c.G236T p.W79L AGTGGTGGTATGT 26 3 0.12 44 0 0 0 1 0 0 WISP2 8839 mdanderson.org 37 20 43348565 43348565 + Missense_Mutation SNP T T A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_003881 exon2 c.T88A p.C30S ACACCATGTACCT 39 3 0.08 75 0 0 0 0 ZNF217 7764 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 52194891 52194891 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_006526 exon2 c.C1465T p.H489Y TGAGATGAATATT 471 39 0.08 548 0 0 8 1 0.13 RRP1 8568 ucsc.edu;bcgsc.ca 37 21 45222243 45222243 + Silent SNP T T A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . RRP1 NM_003683 exon12 c.T1098A p.R366R GAAGCGTCTGCTC 42 4 0.10 80 0 0 23 245 0 0.00 KRTAP10-10 353333 mdanderson.org 37 21 46058034 46058034 + Missense_Mutation SNP G G A rs1785472 by2hit2allele TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_181688 exon1 c.G700A p.V234M CGCCCCGTGTGCT 62 4 0.06 85 0 0 0 0 CACNA1I 8911 mdanderson.org 37 22 40061521 40061521 + Silent SNP G G T rs374991740 alternate_allele TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e CACNA1I_ENST00000402142,NS,carcinoma,+1,2 CACNA1I_ENST00000402142 NM_021096 exon22 c.G3870T p.P1290P GGCGCCGGGCCTG 51 3 0.06 66 0 0 1 2 0 0 PTPRG 5793 mdanderson.org 37 3 62263331 62263331 + Missense_Mutation SNP A A T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_002841 exon26 c.A3742T p.M1248L ATTGTCATGCTGC 30 3 0.10 27 0 0 1 0 0.00 COPG1 22820 mdanderson.org 37 3 128982812 128982812 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_016128 exon13 c.G1194T p.M398I CCTTATGAACTTC 73 4 0.05 95 0 0 10 0 0.00 GPR125 166647 mdanderson.org 37 4 22404358 22404358 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_145290 exon15 c.C2297A p.T766N ATAGCGGTAGTAT 60 4 0.07 77 0 0 4 0 0.00 N4BP2 55728 mdanderson.org 37 4 40122253 40122253 + Missense_Mutation SNP G G T rs149362796 bycluster;byfrequency;alternate_allele TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_018177 exon9 c.G2522T p.R841L AGCAACGAGGATC 89 4 0.04 95 0 0 0 0 KIT 3815 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 55593661 55593661 + Missense_Mutation SNP T T C rs121913513 TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e KIT,NS,malignant_melanoma,0,86 KIT NM_000222 exon11 c.T1727C p.L576P CACAACTTCCTTA 92 5 0.05 104 0 0 0 86 3 2 0.67 . 0 broad.mit.edu 37 4 66960408 66960411 + RNA DEL AAAT AAAT - rs142153899 bycluster;by1000genomes;alternate_allele TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 AAAT AAAT Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . GGTAAAAAATAAA 12 4 0.33 4 0 0 3 0 0.00 TLR2 7097 mdanderson.org 37 4 154625737 154625737 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_003264 exon3 c.G1678A p.A560T TGGCCAGCAAATT 47 4 0.09 87 0 0 13 0 0.00 TMEM174 134288 broad.mit.edu 37 5 72469939 72469939 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . TMEM174 NM_153217 exon2 c.T679C p.C227R GAGGCCTGTGCCT 124 3 0.02 136 0 0 22 0 0 DIAPH1 1729 mdanderson.org 37 5 140953625 140953625 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_005219 exon16 c.C1792A p.P598T GTGGTGGTGGAAT 39 3 0.08 52 0 0 12 0 0.00 DBN1 1627 mdanderson.org 37 5 176885163 176885163 + Missense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_080881 exon13 c.C1678A p.Q560K GGGTCTGGGGGGC 78 4 0.05 109 0 0 225 0 0.00 PMS2P4 0 broad.mit.edu 37 7 66767610 66767611 + RNA INS - - G rs71293166 bycluster TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 - - Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . GGACTGCTTTTTT 13 4 0.31 9 0 0 0 0 TYW1B 441250 broad.mit.edu 37 7 72093938 72093938 + RNA SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . GTCCACGTTCCAT 74 4 0.05 82 0 0 2 0 0.00 TRRAP 8295 mdanderson.org 37 7 98507792 98507792 + Silent SNP C C A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_003496 exon15 c.C1464A p.P488P GGTGCCCACTGCC 41 3 0.07 49 0 0 1 0 0.00 MUC17 140453 hgsc.bcm.edu 37 7 100682117 100682117 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e MUC17,right_upper_lobe,carcinoma,-2,1 MUC17 NM_001040105 exon3 c.G7420A p.G2474S GAGGCTGGCACCC 99 5 0.05 125 1 0.008 -2 1 0 0 EN2 2020 mdanderson.org 37 7 155251298 155251298 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001427 exon1 c.C226T p.R76W ATCCTGCGGCCCG 30 3 0.10 39 0 0 0 0 NPM2 10361 mdanderson.org 37 8 21891643 21891643 + Nonsense_Mutation SNP G G T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_182795 exon6 c.G388T p.E130X TGGGAGGAGGAGG 41 3 0.07 54 0 0 1 0 0.00 PCMTD1 115294 bcgsc.ca 37 8 52733143 52733143 + Missense_Mutation SNP A A G rs111785933 bycluster TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 A A Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . PCMTD1 NM_052937 exon6 c.T842C p.V281A TGTTTAACTCTCT 158 8 0.05 156 3 0.0192307692 73 54 0 0.00 LY6E 4061 ucsc.edu 37 8 144103183 144103183 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic RNA-Seq none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . LY6E NM_002346 exon4 c.G373A p.A125T CTGCCGGCCCTGC 36 2 0.06 46 0 0 10 137 24 0.18 GSDMD 79792 mdanderson.org 37 8 144643588 144643588 + Missense_Mutation SNP C C T novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 C C Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001166237 exon9 c.C731T p.A244V CACCCGCGACAGG 41 3 0.07 46 0 0 117 0 0.00 CNTLN 54875 mdanderson.org 37 9 17135090 17135090 + Silent SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_017738 exon1 c.G27A p.P9P CTCACCGCACCCT 12 2 0.17 21 0 0 0 0 LCN10 414332 mdanderson.org 37 9 139635320 139635320 + Missense_Mutation SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_001001712 exon4 c.C443T p.A148V TGGGTTGCACGCC 34 3 0.09 41 0 0 2 0 0.00 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 2333 2333 + RNA SNP G G A novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 G G Unknown Untested Somatic . WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . . . . . TCCTCCGCATAAG 31 10 0.32 11 0 0 0 0 MAGEE2 139599 mdanderson.org 37 X 75004549 75004549 + Missense_Mutation SNP T T C novel TCGA-ZM-AA0E-01A-12D-A435-10 TCGA-ZM-AA0E-10A-01D-A438-10 T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dbb79a24-d11f-4205-b2b6-a9cd8d31a869 22c71019-10f2-4bec-b3a6-2640f303435e . . NM_138703 exon1 c.A338G p.E113G AGCATCTCGGACT 54 3 0.06 68 0 0 0 0